INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR207 ACC RF02805 DESC Pyrobaculum sRNA 207 STATES 199 NODES 49 CLEN 65 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 16:50:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02805/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.855469 CKSUM 1596881 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 76.80 NC 40.60 EFP7GF -9.1100 0.71915 ECMLC 0.56067 -8.36822 2.48783 1600000 527947 0.002273 ECMGC 0.34977 -19.73433 -2.57937 1600000 161424 0.002478 ECMLI 0.59553 -5.47870 4.03115 1600000 345739 0.003471 ECMGI 0.37334 -14.06106 0.67183 1600000 97907 0.004086 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 99 -6.917 -7.124 -0.054 -5.538 IL 1 1 2 1 4 1 16 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 14 80 99 -7.936 -0.021 -6.590 -1.520 -2.731 1.709 -2.117 D 4 2 3 5 3 0 11 79 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 14 79 98 -7.936 -0.021 -6.590 -1.520 -2.731 1.709 -2.117 D 7 5 3 8 3 0 10 78 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 13 78 97 -7.936 -0.021 -6.590 -1.520 -2.731 1.709 -2.117 D 10 8 3 11 3 0 9 77 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 12 77 96 -8.328 -0.019 -6.646 -1.433 -1.439 -2.164 1.603 D 13 11 3 14 3 0 9 76 95 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 11 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 68 - A - - MR 15 14 3 17 3 1 11 76 95 -8.328 -0.019 -6.646 1.706 -2.314 -1.952 -1.851 D 16 14 3 17 3 0 7 74 93 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 67 - C - - MR 18 17 3 20 3 1 10 75 94 -8.328 -0.208 -2.932 -1.672 1.605 -2.494 -1.100 D 19 17 3 20 3 0 6 74 92 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 66 - A - - MR 21 20 3 23 3 1 10 74 93 -8.142 -0.022 -6.460 1.599 -1.917 -1.595 -1.418 D 22 20 3 23 3 0 5 73 92 -7.383 -2.561 -0.278 IR 23 23 3 23 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 65 - C - - MR 24 23 3 26 3 1 9 73 92 -8.142 -0.022 -6.460 -1.204 1.440 -2.003 -0.730 D 25 23 3 26 3 0 5 73 92 -0.990 -2.561 -1.613 IR 26 26 3 26 3 1 9 73 92 -2.398 -0.377 -4.637 0.000 0.000 0.000 0.000 [ MATR 9 ] - 63 - A - - MR 27 26 3 29 3 1 8 72 91 -8.328 -0.019 -6.646 1.107 -1.409 -0.128 -0.852 D 28 26 3 29 3 0 2 70 89 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 62 - c - - MR 30 29 3 32 3 1 8 71 90 -2.177 -0.379 -6.646 -0.807 0.929 -1.610 0.259 D 31 29 3 32 3 0 1 69 88 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 71 90 -2.690 -0.300 -4.928 0.000 0.000 0.000 0.000 [ MATR 11 ] - 60 - U - - MR 33 32 3 35 3 1 7 70 88 -8.328 -0.019 -6.646 -1.433 -1.439 -2.164 1.603 D 34 32 3 35 3 0 1 68 87 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 59 - G - - MR 36 35 3 38 3 1 6 68 87 -8.328 -0.019 -6.646 -1.520 -2.731 1.709 -2.117 D 37 35 3 38 3 0 0 67 86 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 58 - G - - MR 39 38 3 41 3 1 5 67 86 -8.328 -0.019 -6.646 -1.520 -2.731 1.709 -2.117 D 40 38 3 41 3 0 0 66 85 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 57 - G - - MR 42 41 3 44 3 1 5 66 85 -8.328 -0.019 -6.646 -1.520 -2.731 1.709 -2.117 D 43 41 3 44 3 0 0 65 84 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 56 - G - - MR 45 44 3 47 3 1 4 65 84 -8.328 -0.019 -6.646 -1.520 -2.731 1.709 -2.117 D 46 44 3 47 3 0 0 64 83 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 55 - C - - MR 48 47 3 50 3 1 4 64 83 -8.328 -0.019 -6.646 -1.672 1.605 -2.494 -1.100 D 49 47 3 50 3 0 0 63 82 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 54 - G - - MR 51 50 3 53 3 1 3 63 82 -8.328 -0.019 -6.646 -1.520 -2.731 1.709 -2.117 D 52 50 3 53 3 0 0 62 81 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 53 - C - - MR 54 53 3 56 3 1 3 62 81 -8.328 -0.019 -6.646 -1.672 1.605 -2.494 -1.100 D 55 53 3 56 3 0 0 61 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 52 - C - - MR 57 56 3 59 3 1 2 61 80 -8.328 -0.019 -6.646 -1.672 1.605 -2.494 -1.100 D 58 56 3 59 3 0 0 60 79 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 51 - G - - MR 60 59 3 62 5 1 2 60 79 -7.069 -0.040 -6.884 -7.096 -7.988 -1.520 -2.731 1.709 -2.117 D 61 59 3 62 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 5 50 G U - - MP 63 62 3 67 6 2 3 59 78 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -3.581 -2.364 -3.745 1.155 -4.433 -5.157 -0.045 -3.773 -3.417 1.405 -3.936 3.046 -0.404 -4.373 -1.987 -2.453 ML 64 62 3 67 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 6 49 G C - - MP 69 68 6 73 6 2 3 57 76 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 70 68 6 73 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 7 48 G C - - MP 75 74 6 79 6 2 2 55 74 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 76 74 6 79 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 8 47 G C - - MP 81 80 6 85 6 2 2 53 72 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 82 80 6 85 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 9 46 G C - - MP 87 86 6 91 6 2 2 51 70 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 88 86 6 91 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 10 45 G C - - MP 93 92 6 97 6 2 2 49 68 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -3.797 -2.621 -3.817 1.540 -4.298 -4.438 0.207 -4.128 -3.763 3.181 -4.178 -0.259 -0.108 -3.826 -1.775 -2.718 ML 94 92 6 97 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 11 44 C G - - MP 99 98 6 103 6 2 2 47 66 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.497 -4.398 -4.195 -0.634 -2.925 -4.614 3.534 -3.730 -4.243 -0.387 -4.509 -2.344 0.595 -4.569 -0.630 -3.084 ML 100 98 6 103 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 44 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 12 43 u a - - MP 105 104 6 109 6 2 2 45 64 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -3.398 -3.378 -3.336 0.233 -2.425 -3.954 1.847 -3.096 -3.361 0.458 -3.779 -1.461 2.346 -3.576 1.716 -2.282 ML 106 104 6 109 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 13 42 c g - - MP 111 110 6 115 4 2 2 43 62 -6.836 -8.082 -0.082 -4.535 -3.398 -3.361 -3.348 0.309 -2.426 -3.985 2.571 -3.093 -3.358 0.531 -3.788 -1.399 1.897 -3.577 1.106 -2.265 ML 112 110 6 115 4 1 1 43 62 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 42 61 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 41 59 -12.737 -14.007 -2.036 -0.404 IL 115 115 5 115 4 1 1 43 62 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 41 - a - - MR 117 116 6 119 5 1 1 41 60 -7.069 -0.040 -6.884 -7.096 -7.988 0.579 -0.348 -0.158 -0.279 D 118 116 6 119 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 14 40 c g - - MP 120 119 3 124 6 2 2 40 59 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 0.091 -1.999 1.257 1.096 -2.078 -2.992 1.353 -2.417 -2.181 1.182 -2.737 -0.357 1.116 -2.293 -0.212 -1.328 ML 121 119 3 124 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 15 39 g a - - MP 126 125 6 130 6 2 2 38 57 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 0.126 -1.920 -2.202 1.087 -2.155 -3.021 1.309 -2.460 1.388 1.125 -2.731 -0.228 1.060 -2.362 -0.274 -1.372 ML 127 125 6 130 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 16 38 a g - - MP 132 131 6 136 4 2 2 36 55 -6.917 -7.124 -0.054 -5.538 -3.497 -2.973 2.804 0.580 -2.930 -4.324 1.224 -3.328 -3.408 0.658 -3.863 -0.666 0.528 -3.895 -0.695 -2.387 ML 133 131 6 136 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 38 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 17 - G - - - ML 138 137 6 140 3 1 1 34 52 -7.936 -0.021 -6.590 -1.520 -2.731 1.709 -2.117 D 139 137 6 140 3 0 0 33 51 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 18 - c - - - ML 141 140 3 143 3 1 1 32 51 -8.328 -0.019 -6.646 0.050 0.812 -1.306 -0.313 D 142 140 3 143 3 0 0 31 50 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 37 - U - - MR 144 143 3 146 3 1 1 31 50 -8.328 -0.019 -6.646 -1.433 -1.439 -2.164 1.603 D 145 143 3 146 3 0 0 30 48 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 36 - G - - MR 147 146 3 149 3 1 1 30 49 -8.328 -0.019 -6.646 0.120 -1.594 1.058 -0.999 D 148 146 3 149 3 0 0 29 47 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 35 - u - - MR 150 149 3 152 3 1 1 29 48 -8.328 -0.019 -6.646 -0.239 -0.216 0.154 0.237 D 151 149 3 152 3 0 0 28 46 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 34 - C - - MR 153 152 3 155 3 1 1 28 47 -8.328 -0.019 -6.646 -1.672 1.605 -2.494 -1.100 D 154 152 3 155 3 0 0 27 45 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 33 - C - - MR 156 155 3 158 5 1 1 27 46 -7.069 -0.040 -6.884 -7.096 -7.988 -1.672 1.605 -2.494 -1.100 D 157 155 3 158 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 19 32 G C - - MP 159 158 3 163 6 2 2 26 45 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 160 158 3 163 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 20 31 G C - - MP 165 164 6 169 6 2 2 24 43 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.690 -3.069 -4.785 0.234 -5.160 -4.674 -0.537 -5.023 -4.294 3.626 -4.635 -0.766 -0.924 -4.434 -2.572 -3.662 ML 166 164 6 169 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 30 C G - - MP 171 170 6 175 6 2 2 22 41 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.497 -4.398 -4.195 -0.634 -2.925 -4.614 3.534 -3.730 -4.243 -0.387 -4.509 -2.344 0.595 -4.569 -0.630 -3.084 ML 172 170 6 175 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 22 29 C G - - MP 177 176 6 181 6 2 2 20 39 -9.096 -4.196 -0.101 -7.812 -8.091 -8.486 -4.497 -4.398 -4.195 -0.634 -2.925 -4.614 3.534 -3.730 -4.243 -0.387 -4.509 -2.344 0.595 -4.569 -0.630 -3.084 ML 178 176 6 181 6 1 1 19 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 19 38 -2.799 -0.362 -6.310 -4.478 -5.584 0.000 0.000 0.000 0.000 [ MATP 45 ] 23 27 C G - - MP 183 182 6 187 6 2 2 18 37 -9.096 -9.035 -0.021 -7.812 -8.091 -8.486 -4.497 -4.398 -4.195 -0.634 -2.925 -4.614 3.534 -3.730 -4.243 -0.387 -4.509 -2.344 0.595 -4.569 -0.630 -3.084 ML 184 182 6 187 6 1 1 18 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 16 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 18 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 18 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 24 26 g c - - MP 189 188 6 193 4 2 2 16 35 -6.917 -7.124 -0.054 -5.538 0.385 -1.814 -2.034 1.168 -2.031 -2.845 1.345 -2.345 -0.260 1.666 -2.605 -0.214 1.162 -2.163 -0.187 -1.238 ML 190 188 6 193 4 1 1 17 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 4 1 1 17 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 192 188 6 193 4 0 0 16 34 -4.568 -4.250 -2.265 -0.520 IL 193 193 5 193 4 1 1 19 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - g - - - ML 195 194 6 197 2 1 1 1 1 * 0.000 0.213 -0.898 0.273 0.132 D 196 194 6 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR207 ACC RF02805 DESC Pyrobaculum sRNA 207 LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 16:50:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02805/CM NSEQ 4 EFFN 2.535156 CKSUM 1596881 STATS LOCAL MSV -8.4883 0.71915 STATS LOCAL VITERBI -9.1174 0.71915 STATS LOCAL FORWARD -3.1000 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.82612 1.21751 0.97404 1.79913 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 0.00000 * 1 2.79400 3.68439 0.13318 3.25954 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 2 2.79400 3.68439 0.13318 3.25954 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 3 2.79400 3.68439 0.13318 3.25954 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 4 2.69622 2.64558 3.21698 0.19662 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 5 1.96092 2.99104 0.28579 2.85393 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 6 2.64404 3.33250 0.15636 3.27086 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 7 2.64433 3.33285 0.15630 3.27136 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 8 2.64410 3.33257 0.15635 3.27096 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 9 2.64367 3.33205 0.15644 3.27024 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 10 1.58197 2.69482 0.42975 2.57432 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 11 3.28671 0.21893 3.07427 2.18014 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 12 2.56277 1.50631 2.34200 0.50245 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 13 2.44711 0.90799 2.21778 0.91312 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 14 0.76904 1.80336 1.69055 1.67463 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 15 1.41812 1.87506 0.84242 1.74974 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 16 0.44317 2.01930 2.18294 2.18441 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 17 2.79400 3.68439 0.13318 3.25954 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 18 1.38715 0.72562 2.45096 1.71492 18 c - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 19 2.64290 3.33109 0.15660 3.26892 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 20 2.64427 3.33278 0.15631 3.27125 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 21 3.29037 0.21857 3.07606 2.18079 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 22 3.28976 0.21863 3.07576 2.18069 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 23 3.28169 0.21944 3.07181 2.17925 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 24 1.29499 1.73539 1.08947 1.54472 24 g - - < 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 25 1.24998 2.08020 1.14855 1.30384 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 26 1.14439 1.40722 1.53160 1.51153 26 a - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 27 2.45035 3.23096 0.19098 3.03510 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.20728 1.78577 3.93534 0.21870 1.62740 1.09861 0.40547 28 2.45992 3.24441 0.18843 3.05104 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 29 2.46102 3.24596 0.18814 3.05288 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 30 3.48138 0.18459 3.17451 2.34369 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 31 3.48836 0.18402 3.17762 2.34500 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 32 2.95748 0.18032 3.53372 2.47867 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 33 2.95748 0.18032 3.53372 2.47867 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 34 1.61862 1.52349 1.22529 1.23716 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 35 1.33322 2.67423 0.57203 2.27272 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 36 2.69622 2.64558 3.21698 0.19662 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 37 2.46193 2.48731 0.34365 2.10032 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 38 0.74502 1.93708 1.67875 1.63708 39 a - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 39 1.45876 1.89878 0.85616 1.64540 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 40 0.96159 1.61956 1.48010 1.64966 41 a - - - 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 41 1.34556 2.38606 0.61806 2.21984 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 42 0.99882 2.50705 0.79093 2.33559 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 43 2.45785 3.24151 0.18898 3.04760 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 44 2.80863 0.49209 2.51066 1.39776 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 45 3.46961 0.18555 3.16923 2.34147 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 46 3.47243 0.18532 3.17050 2.34201 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 47 3.47612 0.18502 3.17215 2.34270 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 48 3.48108 0.18461 3.17437 2.34363 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 49 3.07546 1.98511 2.79402 0.28065 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 50 2.79400 3.68439 0.13318 3.25954 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 51 2.95748 0.18032 3.53372 2.47867 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 52 2.95748 0.18032 3.53372 2.47867 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 53 2.79400 3.68439 0.13318 3.25954 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 54 2.95748 0.18032 3.53372 2.47867 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 55 2.79400 3.68439 0.13318 3.25954 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 56 2.79400 3.68439 0.13318 3.25954 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 57 2.79400 3.68439 0.13318 3.25954 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 58 2.79400 3.68439 0.13318 3.25954 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 59 2.69622 2.64558 3.21698 0.19662 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.36516 1.25044 3.93534 0.13128 2.09536 1.09861 0.40547 60 2.11748 0.65254 2.69597 1.23282 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 61 0.56011 2.52382 1.46058 2.14899 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 62 2.55921 0.26981 3.12915 2.15975 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.20728 3.93534 1.78577 1.46634 0.26236 1.09861 0.40547 63 0.20099 3.00185 2.74957 2.68193 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.04696 3.77502 3.77502 1.46634 0.26236 0.20950 1.66593 64 2.95748 0.18032 3.53372 2.47867 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03986 3.93534 3.93534 1.46634 0.26236 1.09861 0.40547 65 0.14034 3.33093 3.04610 3.04429 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02013 3.91561 * 1.46634 0.26236 0.00000 * //