INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR206 ACC RF02804 DESC Pyrobaculum sRNA 206 STATES 184 NODES 48 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 23:15:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02804/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.066406 CKSUM 1262843689 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 76.70 NC 45.30 EFP7GF -9.0914 0.71929 ECMLC 0.55609 -10.43033 1.16608 1600000 758243 0.001583 ECMGC 0.35215 -19.85981 -3.07570 1600000 147551 0.002711 ECMLI 0.51105 -9.12713 2.29494 1600000 411397 0.002917 ECMGI 0.38163 -14.08025 0.06376 1600000 88370 0.004526 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -6.915 -8.160 -0.078 -4.614 IL 1 1 2 1 4 1 17 77 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - A - - MR 3 2 3 5 3 1 18 75 95 -8.403 -0.018 -6.720 1.740 -2.475 -2.097 -2.028 D 4 2 3 5 3 0 13 74 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 18 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - C - - MR 6 5 3 8 3 1 17 74 94 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 7 5 3 8 3 0 12 73 92 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 17 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 59 - A - - MR 9 8 3 11 3 1 17 73 93 -8.403 -0.018 -6.720 1.740 -2.475 -2.097 -2.028 D 10 8 3 11 3 0 11 72 91 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 58 - U - - MR 12 11 3 14 3 1 16 72 92 -8.403 -0.018 -6.720 -0.844 -0.148 -1.596 1.144 D 13 11 3 14 3 0 11 71 90 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 57 - G - - MR 15 14 3 17 3 1 15 71 91 -8.403 -0.018 -6.720 -1.690 -2.927 1.747 -2.314 D 16 14 3 17 3 0 10 70 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 14 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 56 - U - - MR 18 17 3 20 3 1 14 70 90 -8.403 -0.018 -6.720 -1.581 -1.561 -2.320 1.645 D 19 17 3 20 3 0 9 69 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 13 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - U - - MR 21 20 3 23 3 1 13 69 89 -8.403 -0.018 -6.720 -1.581 -1.561 -2.320 1.645 D 22 20 3 23 3 0 8 68 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 13 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - C - - MR 24 23 3 26 3 1 13 68 88 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 25 23 3 26 3 0 7 67 86 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 12 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - C - - MR 27 26 3 29 3 1 12 67 87 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 28 26 3 29 3 0 6 66 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 11 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 52 - C - - MR 30 29 3 32 3 1 11 66 86 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 31 29 3 32 3 0 5 65 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 51 - C - - MR 33 32 3 35 3 1 10 65 85 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 34 32 3 35 3 0 4 64 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 50 - C - - MR 36 35 3 38 3 1 9 64 84 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 37 35 3 38 3 0 3 63 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 8 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 49 - U - - MR 39 38 3 41 3 1 8 63 83 -8.403 -0.018 -6.720 -1.581 -1.561 -2.320 1.645 D 40 38 3 41 3 0 3 62 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 48 - G - - MR 42 41 3 44 3 1 8 62 82 -8.403 -0.018 -6.720 -1.690 -2.927 1.747 -2.314 D 43 41 3 44 3 0 2 61 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 47 - G - - MR 45 44 3 47 3 1 7 61 81 -8.403 -0.018 -6.720 -1.690 -2.927 1.747 -2.314 D 46 44 3 47 3 0 1 60 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - C - - MR 48 47 3 50 3 1 6 60 80 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 49 47 3 50 3 0 1 59 78 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - U - - MR 51 50 3 53 3 1 5 59 79 -8.403 -0.018 -6.720 -1.581 -1.561 -2.320 1.645 D 52 50 3 53 3 0 1 58 77 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 44 - G - - MR 54 53 3 56 5 1 4 58 78 -7.138 -0.038 -6.954 -7.166 -8.057 -1.690 -2.927 1.747 -2.314 D 55 53 3 56 5 0 0 57 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 1 43 c a - - MP 57 56 3 61 4 2 4 57 77 -7.003 -7.210 -0.051 -5.624 -3.612 -3.676 -3.477 -0.152 2.351 -4.006 1.754 -3.180 -3.525 -0.011 -3.895 -1.886 1.874 -3.763 -0.210 -2.461 ML 58 56 3 61 4 1 1 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 3 61 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 2 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 2 - G - - - ML 63 62 6 65 5 1 3 55 74 -7.138 -0.038 -6.954 -7.166 -8.057 -1.690 -2.927 1.747 -2.314 D 64 62 6 65 5 0 0 54 73 -4.959 -0.803 -4.221 -2.596 -2.508 IL 65 65 3 65 5 1 1 55 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 42 G C - - MP 66 65 3 70 6 2 4 54 73 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.846 -3.144 -4.956 0.130 -5.379 -4.734 -0.718 -5.205 -4.395 3.662 -4.725 -0.847 -1.100 -4.536 -2.761 -3.831 ML 67 65 3 70 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 41 C G - - MP 72 71 6 76 6 2 4 52 71 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.665 -4.581 -4.335 -0.803 -3.028 -4.732 3.585 -3.850 -4.389 -0.579 -4.637 -2.530 0.474 -4.726 -0.737 -3.224 ML 73 71 6 76 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 40 G C - - MP 78 77 6 82 4 2 2 50 69 -6.915 -8.160 -0.078 -4.614 -4.846 -3.144 -4.956 0.130 -5.379 -4.734 -0.718 -5.205 -4.395 3.662 -4.725 -0.847 -1.100 -4.536 -2.761 -3.831 ML 79 77 6 82 4 1 1 49 68 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 49 68 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 47 66 -12.737 -14.007 -2.036 -0.404 IL 82 82 5 82 4 1 1 49 68 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 39 - C - - MR 84 83 6 86 3 1 1 48 67 -8.403 -0.211 -2.910 -1.866 1.656 -2.694 -1.255 D 85 83 6 86 3 0 0 46 65 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 38 - a - - MR 87 86 3 89 3 1 1 47 66 -8.212 -0.021 -6.530 0.869 -0.174 -1.004 -0.343 D 88 86 3 89 3 0 0 46 65 -7.435 -0.559 -1.665 IR 89 89 3 89 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 37 - u - - MR 90 89 3 92 5 1 1 46 65 -7.138 -0.220 -3.016 -7.166 -8.057 0.170 -0.807 -0.255 0.552 D 91 89 3 92 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 6 36 G C - - MP 93 92 3 97 6 2 2 45 64 -9.047 -8.986 -0.022 -7.762 -8.042 -8.437 -4.447 -2.955 -4.524 0.392 -4.817 -4.575 -0.253 -4.742 -4.128 3.559 -4.488 -0.645 -0.648 -4.273 -2.276 -3.405 ML 94 92 3 97 6 1 1 44 63 -7.055 -7.401 -0.603 -1.809 -7.250 -4.780 -0.242 -1.190 1.040 -0.600 MR 95 92 3 97 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 7 35 C G - - MP 99 98 6 103 6 2 2 43 62 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -3.412 -3.393 -3.416 -0.068 -2.704 0.142 3.196 -3.335 -3.460 0.180 -3.872 -1.659 0.756 -3.626 -0.542 -2.471 ML 100 98 6 103 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 8 34 c g - - MP 105 104 6 109 6 2 2 41 60 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -0.291 -1.818 -1.879 1.102 -1.812 -2.701 1.519 -2.183 -0.415 1.034 -2.481 -0.407 1.326 -2.015 1.005 -1.112 ML 106 104 6 109 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 9 33 g a - - MP 111 110 6 115 6 2 2 39 58 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -3.729 -3.008 -3.711 0.576 -3.257 -4.686 0.944 -3.542 2.967 0.702 -4.043 -0.581 0.241 -4.253 -0.991 -2.564 ML 112 110 6 115 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 10 32 a g - - MP 117 116 6 121 4 2 2 37 56 -7.003 -7.210 -0.051 -5.624 -3.695 -3.110 2.944 0.472 -3.057 -4.507 1.130 -3.456 -3.563 0.502 -4.010 -0.751 0.398 -4.120 -0.803 -2.532 ML 118 116 6 121 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 11 - G - - - ML 123 122 6 125 3 1 1 34 53 -8.016 -0.020 -6.670 -1.690 -2.927 1.747 -2.314 D 124 122 6 125 3 0 0 33 52 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 12 - A - - - ML 126 125 3 128 3 1 1 33 52 -8.403 -0.018 -6.720 1.170 -1.498 -0.187 -0.950 D 127 125 3 128 3 0 0 32 50 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 31 - U - - MR 129 128 3 131 3 1 1 32 51 -8.403 -0.018 -6.720 -1.581 -1.561 -2.320 1.645 D 130 128 3 131 3 0 0 30 49 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 30 - G - - MR 132 131 3 134 3 1 1 31 50 -8.403 -0.018 -6.720 -1.690 -2.927 1.747 -2.314 D 133 131 3 134 3 0 0 29 48 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 29 - c - - MR 135 134 3 137 3 1 1 30 49 -8.403 -0.018 -6.720 -0.573 0.874 -0.467 -0.373 D 136 134 3 137 3 0 0 28 47 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 28 - C - - MR 138 137 3 140 3 1 1 29 48 -8.403 -0.018 -6.720 -1.866 1.656 -2.694 -1.255 D 139 137 3 140 3 0 0 28 46 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 27 - g - - MR 141 140 3 143 5 1 1 28 47 -7.138 -0.038 -6.954 -7.166 -8.057 -0.372 0.229 0.349 -0.356 D 142 140 3 143 5 0 0 27 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 13 26 G C - - MP 144 143 3 148 6 2 2 27 46 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.846 -3.144 -4.956 0.130 -5.379 -4.734 -0.718 -5.205 -4.395 3.662 -4.725 -0.847 -1.100 -4.536 -2.761 -3.831 ML 145 143 3 148 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 14 25 C G - - MP 150 149 6 154 6 2 2 25 44 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.665 -4.581 -4.335 -0.803 -3.028 -4.732 3.585 -3.850 -4.389 -0.579 -4.637 -2.530 0.474 -4.726 -0.737 -3.224 ML 151 149 6 154 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 15 24 C G - - MP 156 155 6 160 6 2 2 23 42 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.665 -4.581 -4.335 -0.803 -3.028 -4.732 3.585 -3.850 -4.389 -0.579 -4.637 -2.530 0.474 -4.726 -0.737 -3.224 ML 157 155 6 160 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 16 23 C G - - MP 162 161 6 166 6 2 2 21 40 -9.129 -9.068 -0.021 -7.845 -8.124 -8.519 -4.665 -4.581 -4.335 -0.803 -3.028 -4.732 3.585 -3.850 -4.389 -0.579 -4.637 -2.530 0.474 -4.726 -0.737 -3.224 ML 163 161 6 166 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 17 22 C G - - MP 168 167 6 172 4 2 2 19 38 -7.003 -7.210 -0.051 -5.624 -4.665 -4.581 -4.335 -0.803 -3.028 -4.732 3.585 -3.850 -4.389 -0.579 -4.637 -2.530 0.474 -4.726 -0.737 -3.224 ML 169 167 6 172 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 18 - G - - - ML 174 173 6 176 3 1 1 15 33 -1.914 -0.464 -6.670 -1.690 -2.927 1.747 -2.314 D 175 173 6 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 15 33 -2.146 -0.436 -4.846 0.000 0.000 0.000 0.000 [ MATL 45 ] 20 - G - - - ML 177 176 3 179 3 1 1 13 31 -8.016 -0.020 -6.670 -1.690 -2.927 1.747 -2.314 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 21 - a - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.646 -0.384 -0.197 -0.328 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR206 ACC RF02804 DESC Pyrobaculum sRNA 206 LENG 60 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 23:15:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02804/CM NSEQ 4 EFFN 2.597656 CKSUM 1262843689 STATS LOCAL MSV -8.6515 0.71929 STATS LOCAL VITERBI -8.6798 0.71929 STATS LOCAL FORWARD -3.4179 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.83385 1.13111 1.06961 1.74648 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 0.00000 * 1 2.84691 0.54749 2.67155 1.22271 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 2 2.82294 3.71705 0.12887 3.29199 2 G - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 3 2.66533 3.36463 0.15185 3.30408 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 4 3.32294 0.21188 3.11057 2.20440 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 5 2.66346 3.36231 0.15223 3.30087 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 6 2.32006 2.92406 0.24139 2.77289 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 7 2.57787 0.39193 2.41925 1.83681 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 8 1.49812 1.54874 1.46512 1.09996 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 9 2.31631 2.16935 0.37502 2.30421 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 10 0.43364 2.03579 2.20196 2.20104 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 11 2.82294 3.71705 0.12887 3.29199 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 12 0.53136 2.55073 1.50847 2.18105 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 13 2.66149 3.35986 0.15264 3.29749 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 14 3.31962 0.21220 3.10893 2.20381 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 15 3.32000 0.21216 3.10912 2.20388 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 16 3.31933 0.21223 3.10879 2.20376 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 17 3.31831 0.21233 3.10829 2.20358 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 18 2.82294 3.71705 0.12887 3.29199 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.39596 1.17790 3.96096 0.11941 2.18428 1.09861 0.40547 19 2.82294 3.71705 0.12887 3.29199 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 20 0.91778 1.64841 1.51495 1.66907 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 21 2.48239 3.27619 0.18308 3.07956 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 22 2.48326 3.27743 0.18285 3.08103 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 23 2.48441 3.27906 0.18256 3.08296 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 24 2.48595 3.28125 0.18216 3.08554 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 25 3.51603 0.17950 3.20727 2.36313 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 26 1.72694 1.18536 1.08882 1.71522 27 g - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 27 2.99210 0.17427 3.56813 2.50668 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 28 1.90221 0.69849 1.72464 1.74190 29 c - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 29 2.82294 3.71705 0.12887 3.29199 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 30 2.72329 2.66810 3.24503 0.19117 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 31 2.48065 2.51128 0.33586 2.11676 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 32 0.44534 2.38480 2.00159 2.02370 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 33 1.26374 1.81728 1.07850 1.53790 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 34 2.11858 1.84065 0.45140 2.47282 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.20308 3.96096 1.80339 1.46634 0.26236 1.09861 0.40547 35 3.18707 0.24030 2.86395 2.16049 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04561 3.80349 3.80349 1.46634 0.26236 0.20800 1.67243 36 1.27167 1.99581 1.55525 0.98726 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.20308 3.96096 1.80339 1.46634 0.26236 1.09861 0.40547 37 0.74350 1.49235 2.15616 1.69313 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.04561 3.80349 3.80349 1.46634 0.26236 0.20800 1.67243 38 2.99210 0.17427 3.56813 2.50668 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 39 3.49192 0.18141 3.19640 2.35860 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 40 2.48005 3.27287 0.18368 3.07565 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 41 3.48125 0.18227 3.19155 2.35656 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 42 0.47163 2.83579 1.40733 2.62348 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 43 2.82294 3.71705 0.12887 3.29199 44 G - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 44 2.72329 2.66810 3.24503 0.19117 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 45 2.99210 0.17427 3.56813 2.50668 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 46 2.82294 3.71705 0.12887 3.29199 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 47 2.82294 3.71705 0.12887 3.29199 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 48 2.72329 2.66810 3.24503 0.19117 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 49 2.99210 0.17427 3.56813 2.50668 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 50 2.99210 0.17427 3.56813 2.50668 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 51 2.99210 0.17427 3.56813 2.50668 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 52 2.99210 0.17427 3.56813 2.50668 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 53 2.99210 0.17427 3.56813 2.50668 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 54 2.72329 2.66810 3.24503 0.19117 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 55 2.72329 2.66810 3.24503 0.19117 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 56 2.82294 3.71705 0.12887 3.29199 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 57 2.09388 1.49028 2.62281 0.54666 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 58 0.13609 3.35951 3.07194 3.07586 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 59 2.99210 0.17427 3.56813 2.50668 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.03883 3.96096 3.96096 1.46634 0.26236 1.09861 0.40547 60 0.13609 3.35951 3.07194 3.07586 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.01961 3.94173 * 1.46634 0.26236 0.00000 * //