INFERNAL1/a [1.1.4 | Dec 2020] NAME PyrR206 ACC RF02804 DESC Pyrobaculum sRNA 206 STATES 187 NODES 49 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Wed Oct 25 12:04:05 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.042969 CKSUM 1262843689 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.50 NC 39.20 EFP7GF -8.1167 0.71922 ECMLC 0.58155 -9.80640 1.25445 1600000 746018 0.001609 ECMGC 0.36382 -18.78311 -2.95081 1600000 126945 0.003151 ECMLI 0.50154 -9.34219 2.27971 1600000 407977 0.002941 ECMGI 0.37733 -14.02546 0.16428 1600000 84602 0.004728 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 95 -6.906 -8.152 -0.078 -4.605 IL 1 1 2 1 4 1 18 77 97 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - A - - MR 3 2 3 5 3 1 19 76 95 -8.395 -0.018 -6.712 1.737 -2.458 -2.081 -2.009 D 4 2 3 5 3 0 14 74 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 18 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - C - - MR 6 5 3 8 3 1 18 75 94 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 7 5 3 8 3 0 13 73 92 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 18 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 59 - A - - MR 9 8 3 11 3 1 18 74 93 -8.395 -0.018 -6.712 1.737 -2.458 -2.081 -2.009 D 10 8 3 11 3 0 12 72 91 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 17 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 58 - U - - MR 12 11 3 14 3 1 17 73 92 -8.395 -0.018 -6.712 -0.838 -0.154 -1.589 1.143 D 13 11 3 14 3 0 12 71 90 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 57 - G - - MR 15 14 3 17 3 1 16 72 91 -8.395 -0.018 -6.712 -1.672 -2.906 1.744 -2.293 D 16 14 3 17 3 0 11 70 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 56 - U - - MR 18 17 3 20 3 1 15 71 90 -8.395 -0.018 -6.712 -1.565 -1.547 -2.303 1.640 D 19 17 3 20 3 0 10 69 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 14 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - U - - MR 21 20 3 23 3 1 14 70 89 -8.395 -0.018 -6.712 -1.565 -1.547 -2.303 1.640 D 22 20 3 23 3 0 9 68 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 14 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - C - - MR 24 23 3 26 3 1 14 69 88 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 25 23 3 26 3 0 8 67 86 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - C - - MR 27 26 3 29 3 1 13 68 87 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 28 26 3 29 3 0 7 66 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 52 - C - - MR 30 29 3 32 3 1 12 67 86 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 31 29 3 32 3 0 6 65 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 11 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 51 - C - - MR 33 32 3 35 3 1 11 66 85 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 34 32 3 35 3 0 5 64 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 10 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 50 - C - - MR 36 35 3 38 3 1 10 65 84 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 37 35 3 38 3 0 5 63 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 49 - U - - MR 39 38 3 41 3 1 10 64 83 -8.395 -0.018 -6.712 -1.565 -1.547 -2.303 1.640 D 40 38 3 41 3 0 4 62 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 48 - G - - MR 42 41 3 44 3 1 9 63 82 -8.395 -0.018 -6.712 -1.672 -2.906 1.744 -2.293 D 43 41 3 44 3 0 3 61 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 8 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 47 - G - - MR 45 44 3 47 3 1 8 62 81 -8.395 -0.018 -6.712 -1.672 -2.906 1.744 -2.293 D 46 44 3 47 3 0 3 60 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - C - - MR 48 47 3 50 3 1 7 61 80 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 49 47 3 50 3 0 2 59 78 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - U - - MR 51 50 3 53 3 1 6 60 79 -8.395 -0.018 -6.712 -1.565 -1.547 -2.303 1.640 D 52 50 3 53 3 0 2 58 78 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 44 - G - - MR 54 53 3 56 5 1 6 59 78 -7.131 -0.038 -6.946 -7.158 -8.050 -1.672 -2.906 1.744 -2.293 D 55 53 3 56 5 0 2 58 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 4 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 1 43 c a - - MP 57 56 3 61 4 2 5 58 77 -6.994 -7.201 -0.051 -5.615 -3.597 -3.661 -3.465 -0.138 2.343 -3.996 1.761 -3.170 -3.513 0.003 -3.884 -1.871 1.867 -3.749 -0.203 -2.450 ML 58 56 3 61 4 1 3 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 4 1 1 58 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 3 61 4 0 0 57 76 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 60 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 2 - G - - - ML 63 62 6 65 5 1 4 55 74 -7.131 -0.038 -6.946 -7.158 -8.050 -1.672 -2.906 1.744 -2.293 D 64 62 6 65 5 0 0 54 73 -4.959 -0.803 -4.221 -2.596 -2.508 IL 65 65 3 65 5 1 3 56 75 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 42 G C - - MP 66 65 3 70 6 2 5 54 73 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.829 -3.136 -4.937 0.142 -5.355 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.525 -2.740 -3.812 ML 67 65 3 70 6 1 2 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 41 C G - - MP 72 71 6 76 6 2 4 52 71 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 73 71 6 76 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 40 G C - - MP 78 77 6 82 4 2 2 50 69 -6.906 -8.152 -0.078 -4.605 -4.829 -3.136 -4.937 0.142 -5.355 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.525 -2.740 -3.812 ML 79 77 6 82 4 1 1 50 69 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 49 68 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 47 66 -12.737 -14.007 -2.036 -0.404 IL 82 82 5 82 4 1 1 50 69 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 39 - C - - MR 84 83 6 86 3 1 1 48 67 -8.395 -0.208 -2.928 -1.845 1.651 -2.672 -1.238 D 85 83 6 86 3 0 0 47 66 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 38 - a - - MR 87 86 3 89 3 1 1 47 66 -8.207 -0.021 -6.525 0.864 -0.170 -1.000 -0.338 D 88 86 3 89 3 0 0 46 65 -7.421 -0.565 -1.651 IR 89 89 3 89 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 37 - u - - MR 90 89 3 92 5 1 1 46 65 -7.131 -0.218 -3.034 -7.158 -8.050 0.166 -0.803 -0.262 0.557 D 91 89 3 92 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 6 36 G C - - MP 93 92 3 97 6 2 2 45 64 -9.044 -8.984 -0.022 -7.760 -8.040 -8.435 -4.436 -2.949 -4.512 0.399 -4.801 -4.570 -0.240 -4.729 -4.121 3.555 -4.481 -0.639 -0.635 -4.265 -2.262 -3.393 ML 94 92 3 97 6 1 1 44 63 -7.043 -7.389 -0.609 -1.797 -7.239 -4.768 -0.232 -1.177 1.029 -0.588 MR 95 92 3 97 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 7 35 C G - - MP 99 98 6 103 6 2 2 43 62 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.407 -3.388 -3.414 -0.065 -2.707 0.104 3.200 -3.336 -3.457 0.186 -3.870 -1.654 0.753 -3.623 -0.547 -2.469 ML 100 98 6 103 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 8 34 c g - - MP 105 104 6 109 6 2 2 41 60 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -0.294 -1.815 -1.876 1.104 -1.810 -2.698 1.521 -2.181 -0.417 1.037 -2.478 -0.403 1.328 -2.012 0.992 -1.110 ML 106 104 6 109 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 9 33 g a - - MP 111 110 6 115 6 2 2 39 58 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -3.709 -2.994 -3.694 0.586 -3.242 -4.665 0.955 -3.528 2.953 0.718 -4.028 -0.573 0.256 -4.229 -0.978 -2.550 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 10 32 a g - - MP 117 116 6 121 4 2 2 37 56 -6.994 -7.201 -0.051 -5.615 -3.674 -3.095 2.930 0.484 -3.043 -4.487 1.140 -3.442 -3.546 0.519 -3.994 -0.742 0.412 -4.096 -0.791 -2.516 ML 118 116 6 121 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 39 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 11 - G - - - ML 123 122 6 125 3 1 1 35 53 -8.007 -0.020 -6.661 -1.672 -2.906 1.744 -2.293 D 124 122 6 125 3 0 0 33 52 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 12 - A - - - ML 126 125 3 128 3 1 1 34 52 -8.395 -0.018 -6.712 1.163 -1.488 -0.181 -0.939 D 127 125 3 128 3 0 0 32 51 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 31 - U - - MR 129 128 3 131 3 1 1 33 51 -8.395 -0.018 -6.712 -1.565 -1.547 -2.303 1.640 D 130 128 3 131 3 0 0 31 50 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 30 - G - - MR 132 131 3 134 3 1 1 31 50 -8.395 -0.018 -6.712 -1.672 -2.906 1.744 -2.293 D 133 131 3 134 3 0 0 30 49 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 29 - c - - MR 135 134 3 137 3 1 1 30 49 -8.395 -0.018 -6.712 -0.569 0.873 -0.474 -0.368 D 136 134 3 137 3 0 0 29 48 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 28 - C - - MR 138 137 3 140 3 1 1 29 48 -8.395 -0.018 -6.712 -1.845 1.651 -2.672 -1.238 D 139 137 3 140 3 0 0 28 47 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 27 - g - - MR 141 140 3 143 5 1 1 28 47 -7.131 -0.038 -6.946 -7.158 -8.050 -0.366 0.215 0.356 -0.353 D 142 140 3 143 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 13 26 G C - - MP 144 143 3 148 6 2 2 27 46 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.829 -3.136 -4.937 0.142 -5.355 -4.728 -0.698 -5.185 -4.384 3.658 -4.715 -0.838 -1.081 -4.525 -2.740 -3.812 ML 145 143 3 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 14 25 C G - - MP 150 149 6 154 6 2 2 25 44 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 151 149 6 154 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 15 24 C G - - MP 156 155 6 160 6 2 2 23 42 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 157 155 6 160 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 16 23 C G - - MP 162 161 6 166 6 2 2 21 40 -9.125 -9.064 -0.021 -7.841 -8.121 -8.516 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 163 161 6 166 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 17 22 C G - - MP 168 167 6 172 4 2 2 19 38 -6.994 -7.201 -0.051 -5.615 -4.646 -4.561 -4.320 -0.784 -3.017 -4.719 3.580 -3.837 -4.373 -0.558 -4.623 -2.509 0.488 -4.709 -0.726 -3.209 ML 169 167 6 172 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 18 - G - - - ML 174 173 6 176 3 1 1 16 35 -8.007 -0.463 -1.885 -1.672 -2.906 1.744 -2.293 D 175 173 6 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 19 - C - - - ML 177 176 3 179 3 1 1 15 33 -7.571 -0.027 -6.225 -0.853 1.259 -1.628 -0.454 D 178 176 3 179 3 0 0 14 32 -7.975 -0.318 -2.367 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 20 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.007 -0.020 -6.661 -1.672 -2.906 1.744 -2.293 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 21 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.638 -0.379 -0.193 -0.322 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME PyrR206 ACC RF02804 DESC Pyrobaculum sRNA 206 LENG 61 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Oct 25 12:04:05 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 2.566406 CKSUM 1262843689 STATS LOCAL MSV -8.6190 0.71922 STATS LOCAL VITERBI -8.7529 0.71922 STATS LOCAL FORWARD -3.3639 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.83666 1.12064 1.07860 1.74579 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 0.00000 * 1 2.83484 0.54891 2.65890 1.22530 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 2 2.80854 3.70081 0.13100 3.27586 2 G - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 3 2.65599 3.35021 0.15382 3.28971 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 4 3.30804 0.21506 3.09402 2.19285 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 5 2.65421 3.34800 0.15419 3.28666 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 6 2.31482 2.91479 0.24332 2.76490 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 7 2.57354 0.39292 2.41364 1.83781 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 8 1.49689 1.54683 1.46319 1.10335 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 9 2.30829 2.15992 0.37932 2.29353 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 10 0.43918 2.02682 2.19092 2.19046 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 11 2.80854 3.70081 0.13100 3.27586 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 12 0.53615 2.54205 1.50385 2.17135 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 13 2.65218 3.34549 0.15461 3.28319 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 14 3.30475 0.21538 3.09241 2.19227 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 15 3.30519 0.21534 3.09262 2.19235 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 16 3.30456 0.21540 3.09232 2.19224 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 17 3.30357 0.21549 3.09183 2.19206 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 18 2.80854 3.70081 0.13100 3.27586 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.39579 3.95499 1.17865 1.46634 0.26236 1.09861 0.40547 19 2.16073 0.41523 2.71082 1.84461 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05536 3.61456 3.61456 1.46634 0.26236 0.11737 2.20056 20 2.80854 3.70081 0.13100 3.27586 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 21 0.92378 1.64464 1.51166 1.66412 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 22 2.47074 3.25975 0.18584 3.06463 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 23 2.47160 3.26096 0.18561 3.06606 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 24 2.47272 3.26255 0.18532 3.06794 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 25 2.47423 3.26468 0.18493 3.07047 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 26 3.50221 0.18174 3.19249 2.35408 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 27 1.72177 1.19601 1.08353 1.71229 27 g - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 28 2.97486 0.17726 3.55101 2.49273 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 29 1.89819 0.69906 1.73053 1.73775 29 c - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 30 2.80854 3.70081 0.13100 3.27586 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 31 2.70980 2.65688 3.23105 0.19387 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 32 2.46967 2.49860 0.34011 2.10787 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 33 0.45079 2.37245 1.99197 2.01590 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 34 1.26367 1.81393 1.08214 1.53478 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 35 2.11896 1.85367 0.44877 2.46781 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.20116 3.95499 1.81365 1.46634 0.26236 1.09861 0.40547 36 3.17737 0.24244 2.85356 2.15454 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04579 3.79962 3.79962 1.46634 0.26236 0.21107 1.65926 37 1.27485 1.99270 1.56039 0.98311 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.20116 3.95499 1.81365 1.46634 0.26236 1.09861 0.40547 38 0.74726 1.48985 2.15251 1.68880 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.04579 3.79962 3.79962 1.46634 0.26236 0.21107 1.65926 39 2.97486 0.17726 3.55101 2.49273 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 40 3.47848 0.18365 3.18183 2.34962 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 41 2.46838 3.25641 0.18646 3.06068 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 42 3.46771 0.18453 3.17694 2.34756 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 43 0.47673 2.82314 1.40097 2.61164 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 44 2.80854 3.70081 0.13100 3.27586 44 G - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 45 2.70980 2.65688 3.23105 0.19387 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 46 2.97486 0.17726 3.55101 2.49273 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 47 2.80854 3.70081 0.13100 3.27586 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 48 2.80854 3.70081 0.13100 3.27586 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 49 2.70980 2.65688 3.23105 0.19387 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 50 2.97486 0.17726 3.55101 2.49273 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 51 2.97486 0.17726 3.55101 2.49273 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 52 2.97486 0.17726 3.55101 2.49273 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 53 2.97486 0.17726 3.55101 2.49273 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 54 2.97486 0.17726 3.55101 2.49273 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 55 2.70980 2.65688 3.23105 0.19387 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 56 2.70980 2.65688 3.23105 0.19387 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 57 2.80854 3.70081 0.13100 3.27586 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 58 2.08840 1.49505 2.61675 0.54674 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 59 0.13819 3.34528 3.05907 3.06014 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 60 2.97486 0.17726 3.55101 2.49273 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.03907 3.95499 3.95499 1.46634 0.26236 1.09861 0.40547 61 0.13819 3.34528 3.05907 3.06014 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.01973 3.93565 * 1.46634 0.26236 0.00000 * //