INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR205 ACC RF02803 DESC Pyrobaculum sRNA 205 STATES 187 NODES 49 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 15:21:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02803/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.026367 CKSUM 3367858566 NULL 0.000 0.000 0.000 0.000 GA 35.60 TC 36.50 NC 35.40 EFP7GF -9.8158 0.71916 ECMLC 0.62196 -8.03115 1.31381 1600000 401210 0.002991 ECMGC 0.44773 -16.81544 -4.08261 1600000 119644 0.003343 ECMLI 0.60945 -6.59569 2.38193 1600000 285343 0.004205 ECMGI 0.45535 -13.18585 -1.34116 1600000 87983 0.004546 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.987 -7.194 -0.052 -5.608 IL 1 1 2 1 4 1 17 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 77 96 -8.001 -0.020 -6.655 1.151 -1.157 -1.202 -0.159 D 4 2 3 5 3 0 12 75 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 15 76 95 -8.001 -0.020 -6.655 0.702 -0.339 -1.008 0.119 D 7 5 3 8 3 0 11 74 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 14 75 94 -8.389 -0.018 -6.707 0.011 0.148 -1.116 0.509 D 10 8 3 11 3 0 10 73 93 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 14 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - A - - MR 12 11 3 14 3 1 13 74 93 -8.389 -0.018 -6.707 1.734 -2.445 -2.070 -1.995 D 13 11 3 14 3 0 8 72 91 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - u - - MR 15 14 3 17 3 1 13 73 92 -8.389 -0.018 -6.707 0.377 -0.850 -1.107 0.750 D 16 14 3 17 3 0 7 71 90 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - A - - MR 18 17 3 20 3 1 12 72 91 -8.389 -0.018 -6.707 1.734 -2.445 -2.070 -1.995 D 19 17 3 20 3 0 6 70 89 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - C - - MR 21 20 3 23 3 1 11 71 90 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 22 20 3 23 3 0 5 69 88 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - C - - MR 24 23 3 26 3 1 10 70 89 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 25 23 3 26 3 0 4 68 87 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 9 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - G - - MR 27 26 3 29 3 1 9 69 88 -8.389 -0.018 -6.707 -1.659 -2.891 1.741 -2.278 D 28 26 3 29 3 0 3 67 86 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 56 - G - - MR 30 29 3 32 3 1 9 68 87 -8.389 -0.018 -6.707 -1.659 -2.891 1.741 -2.278 D 31 29 3 32 3 0 2 66 85 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 55 - C - - MR 33 32 3 35 3 1 8 67 86 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 34 32 3 35 3 0 2 65 84 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 7 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 54 - C - - MR 36 35 3 38 3 1 7 66 85 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 37 35 3 38 3 0 1 64 83 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 6 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - C - - MR 39 38 3 41 3 1 6 65 84 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 40 38 3 41 3 0 1 63 82 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - C - - MR 42 41 3 44 3 1 6 64 83 -8.389 -0.018 -6.707 -1.830 1.647 -2.657 -1.226 D 43 41 3 44 3 0 0 62 81 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - A - - MR 45 44 3 47 3 1 5 63 82 -8.389 -0.018 -6.707 1.734 -2.445 -2.070 -1.995 D 46 44 3 47 3 0 0 61 80 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 4 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 50 - U - - MR 48 47 3 50 3 1 4 62 81 -8.389 -0.018 -6.707 -1.554 -1.538 -2.291 1.637 D 49 47 3 50 3 0 0 60 79 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 3 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 49 - U - - MR 51 50 3 53 3 1 4 61 80 -8.389 -0.018 -6.707 -1.554 -1.538 -2.291 1.637 D 52 50 3 53 3 0 0 59 78 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 48 - G - - MR 54 53 3 56 3 1 3 60 79 -8.389 -0.018 -6.707 -1.659 -2.891 1.741 -2.278 D 55 53 3 56 3 0 0 58 77 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 2 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 47 - G - - MR 57 56 3 59 3 1 3 59 78 -8.389 -0.018 -6.707 -1.659 -2.891 1.741 -2.278 D 58 56 3 59 3 0 0 57 76 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 2 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 46 - G - - MR 60 59 3 62 5 1 3 58 77 -7.125 -0.038 -6.941 -7.153 -8.045 -1.659 -2.891 1.741 -2.278 D 61 59 3 62 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 4 45 G C - - MP 63 62 3 67 6 2 4 57 76 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -3.687 -2.571 -3.704 1.851 -4.200 -4.439 0.277 -4.016 -3.693 3.029 -4.124 -0.196 -0.030 -3.767 -1.694 -2.605 ML 64 62 3 67 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 5 44 C G - - MP 69 68 6 73 6 2 3 55 74 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 70 68 6 73 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 6 43 C G - - MP 75 74 6 79 4 2 2 53 72 -6.987 -7.194 -0.052 -5.608 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 76 74 6 79 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 53 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 7 - C - - - ML 81 80 6 83 3 1 1 50 69 -8.001 -0.020 -6.655 -1.830 1.647 -2.657 -1.226 D 82 80 6 83 3 0 0 49 68 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 8 - U - - - ML 84 83 3 86 5 1 1 49 68 -7.125 -0.038 -6.941 -7.153 -8.045 -1.554 -1.538 -2.291 1.637 D 85 83 3 86 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 86 86 3 86 5 1 1 49 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 9 42 a u - - MP 87 86 3 91 6 2 2 48 67 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -3.366 -2.399 -3.477 2.629 -4.062 -4.772 0.169 -3.662 -3.346 1.569 -3.893 1.803 -0.084 -3.896 -1.717 -2.319 ML 88 86 3 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 10 41 G C - - MP 93 92 6 97 6 2 2 46 65 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.817 -3.130 -4.924 0.150 -5.339 -4.723 -0.685 -5.171 -4.377 3.656 -4.708 -0.832 -1.068 -4.517 -2.726 -3.799 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 11 40 G C - - MP 99 98 6 103 6 2 2 44 63 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.817 -3.130 -4.924 0.150 -5.339 -4.723 -0.685 -5.171 -4.377 3.656 -4.708 -0.832 -1.068 -4.517 -2.726 -3.799 ML 100 98 6 103 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 12 39 C G - - MP 105 104 6 109 6 2 2 42 61 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -3.855 -3.826 -3.675 -0.095 -2.528 -4.183 3.083 -3.274 -3.698 0.122 -4.051 -1.847 1.086 -3.967 1.125 -2.564 ML 106 104 6 109 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 13 38 a a - - MP 111 110 6 115 6 2 2 40 59 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 2.878 -2.809 -3.470 0.735 -3.186 -4.494 0.920 -3.413 -3.363 0.764 -3.866 -0.441 0.311 -3.940 -0.971 -2.375 ML 112 110 6 115 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 14 37 a g - - MP 117 116 6 121 4 2 2 38 57 -6.987 -7.194 -0.052 -5.608 -3.659 -3.085 2.920 0.492 -3.033 -4.473 1.148 -3.432 -3.534 0.531 -3.983 -0.735 0.422 -4.078 -0.782 -2.505 ML 118 116 6 121 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 15 - C - - - ML 123 122 6 125 3 1 1 35 54 -8.001 -0.020 -6.655 -1.830 1.647 -2.657 -1.226 D 124 122 6 125 3 0 0 34 53 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 16 - A - - - ML 126 125 3 128 3 1 1 34 53 -8.389 -0.018 -6.707 1.734 -2.445 -2.070 -1.995 D 127 125 3 128 3 0 0 33 52 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - U - - MR 129 128 3 131 3 1 1 33 52 -8.389 -0.018 -6.707 -1.554 -1.538 -2.291 1.637 D 130 128 3 131 3 0 0 32 50 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 35 - A - - MR 132 131 3 134 3 1 1 32 51 -8.389 -0.018 -6.707 1.734 -2.445 -2.070 -1.995 D 133 131 3 134 3 0 0 31 49 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 34 - a - - MR 135 134 3 137 3 1 1 31 50 -8.389 -0.018 -6.707 0.741 -0.945 -0.285 -0.016 D 136 134 3 137 3 0 0 30 48 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 33 - G - - MR 138 137 3 140 3 1 1 30 49 -8.389 -0.018 -6.707 -1.659 -2.891 1.741 -2.278 D 139 137 3 140 3 0 0 29 47 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 32 - C - - MR 141 140 3 143 5 1 1 29 48 -7.125 -0.038 -6.941 -7.153 -8.045 -1.830 1.647 -2.657 -1.226 D 142 140 3 143 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 17 31 C G - - MP 144 143 3 148 6 2 2 28 47 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 145 143 3 148 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 18 30 C G - - MP 150 149 6 154 6 2 2 26 45 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 151 149 6 154 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 19 29 C G - - MP 156 155 6 160 6 2 2 24 43 -9.123 -9.062 -0.021 -7.838 -8.118 -8.513 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 157 155 6 160 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 20 28 C G - - MP 162 161 6 166 6 2 2 22 41 -9.123 -9.062 -0.085 -4.395 -8.118 -8.513 -4.633 -4.547 -4.309 -0.771 -3.009 -4.710 3.576 -3.827 -4.361 -0.543 -4.613 -2.495 0.497 -4.697 -0.717 -3.198 ML 163 161 6 166 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 27 u g - - MP 168 167 6 172 4 2 2 20 39 -6.817 -7.024 -0.058 -5.438 -3.848 -3.758 -3.605 -0.117 -2.442 -4.071 1.838 -3.190 -3.643 0.119 -3.961 -1.767 1.025 -3.955 2.833 -2.527 ML 169 167 6 172 4 1 1 21 39 -4.276 -4.458 -0.334 -3.188 -0.225 0.696 -0.942 0.005 MR 170 167 6 172 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 22 - G - - - ML 174 173 6 176 3 1 1 17 35 -3.263 -0.175 -6.655 -1.659 -2.891 1.741 -2.278 D 175 173 6 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 17 36 -1.751 -0.606 -4.451 0.000 0.000 0.000 0.000 [ MATL 45 ] 24 - a - - - ML 177 176 3 179 3 1 1 15 33 -8.001 -0.020 -6.655 0.775 -0.919 -1.069 0.360 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 25 - g - - - ML 180 179 3 182 3 1 1 13 31 -8.001 -0.020 -6.655 0.484 -1.490 0.773 -0.898 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 26 - g - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -0.287 -0.394 0.458 0.065 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR205 ACC RF02803 DESC Pyrobaculum sRNA 205 LENG 61 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 15:21:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02803/CM NSEQ 5 EFFN 2.592773 CKSUM 3367858566 STATS LOCAL MSV -8.7253 0.71916 STATS LOCAL VITERBI -8.7246 0.71916 STATS LOCAL FORWARD -3.4686 0.71916 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55458 1.20927 1.17177 1.71210 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 0.00000 * 1 0.54010 2.28022 2.32087 1.52851 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 2 0.86836 1.62281 2.15018 1.32217 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 3 1.39463 1.24891 2.22826 1.02850 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 4 1.36183 2.59974 0.53551 2.47525 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 5 3.31713 0.21271 3.10627 2.20198 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 6 3.31758 0.21266 3.10650 2.20206 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 7 2.98941 0.17473 3.56547 2.50451 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 8 2.72118 2.66635 3.24285 0.19159 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 9 0.80085 2.76905 0.88454 2.58461 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 10 2.66273 3.36097 0.15239 3.29988 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 11 2.66190 3.35993 0.15256 3.29845 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 12 2.76663 0.54444 2.54278 1.27901 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 13 0.41606 2.21848 2.01788 2.31620 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 14 0.43223 2.03649 2.20466 2.20576 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 15 2.98941 0.17473 3.56547 2.50451 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 16 0.13641 3.35729 3.06993 3.07341 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 17 3.31460 0.21295 3.10503 2.20152 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 18 3.31742 0.21268 3.10642 2.20203 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 19 3.31776 0.21265 3.10659 2.20209 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 20 3.31708 0.21271 3.10625 2.20197 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 21 2.72676 1.45136 2.57721 0.47107 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 22 2.82070 3.71452 0.12920 3.28948 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.16248 2.03286 3.96301 0.26861 1.44580 1.09861 0.40547 23 0.81558 2.09364 2.20216 1.12757 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 24 1.03910 2.55174 0.79491 2.14851 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 25 1.65016 1.66491 1.00889 1.36983 26 g - - _ 1.38629 1.38629 1.38629 1.38629 0.16674 3.96301 2.00566 1.46634 0.26236 1.09861 0.40547 26 2.03968 2.76972 0.31412 2.56630 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.04393 3.84020 3.84020 1.46634 0.26236 0.24878 1.51298 27 2.48146 3.27489 0.18327 3.07872 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 28 2.48260 3.27651 0.18298 3.08064 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 29 2.48414 3.27870 0.18258 3.08323 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 30 2.48628 3.28175 0.18203 3.08683 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 31 2.98941 0.17473 3.56547 2.50451 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 32 2.82070 3.71452 0.12920 3.28948 33 G - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 33 0.84684 2.09973 1.58456 1.41179 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 34 0.13641 3.35729 3.06993 3.07341 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 35 2.72118 2.66635 3.24285 0.19159 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 36 2.48165 2.51060 0.33586 2.11652 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 37 0.46300 2.34022 2.04168 1.93454 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 38 1.98595 2.70459 0.33408 2.52757 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 39 3.48908 0.18181 3.19379 2.35706 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 40 3.48556 0.18210 3.19220 2.35639 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 41 2.78967 1.76464 2.56180 0.37085 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 42 2.48256 3.27645 0.18299 3.08057 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 43 2.48409 3.27863 0.18260 3.08314 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 44 2.72048 0.60894 2.41669 1.20061 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 45 2.82070 3.71452 0.12920 3.28948 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 46 2.82070 3.71452 0.12920 3.28948 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 47 2.82070 3.71452 0.12920 3.28948 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 48 2.72118 2.66635 3.24285 0.19159 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 49 2.72118 2.66635 3.24285 0.19159 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 50 0.13641 3.35729 3.06993 3.07341 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 51 2.98941 0.17473 3.56547 2.50451 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 52 2.98941 0.17473 3.56547 2.50451 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 53 2.98941 0.17473 3.56547 2.50451 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 54 2.98941 0.17473 3.56547 2.50451 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 55 2.82070 3.71452 0.12920 3.28948 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 56 2.82070 3.71452 0.12920 3.28948 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 57 2.98941 0.17473 3.56547 2.50451 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 58 2.98941 0.17473 3.56547 2.50451 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 59 0.13641 3.35729 3.06993 3.07341 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 60 1.11427 2.04792 2.22955 0.83180 61 u - - : 1.38629 1.38629 1.38629 1.38629 0.03875 3.96301 3.96301 1.46634 0.26236 1.09861 0.40547 61 0.13641 3.35729 3.06993 3.07341 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01956 3.94382 * 1.46634 0.26236 0.00000 * //