# STOCKHOLM 1.0
#=GF ID PyrR205
#=GF AC RF02803
#=GF DE Pyrobaculum sRNA 205
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 35.6
#=GF NC 35.4
#=GF TC 36.5
#=GF SE Argasinska J
#=GF SS Predicted; 22282340
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF RN [1]
#=GF RM 22282340
#=GF RT Discovery of Pyrobaculum small RNA families with atypical pseudouridine
#=GF RT guide RNA features.
#=GF RA Bernick DL, Dennis PP, Hochsmann M, Lowe TM
#=GF RL RNA. 2012;18:402-411.
#=GF CC Non canonical pseudouridylation guide sRNA features. Predicted to target
#=GF CC 23S U2029 in Pyrobaculum.
#=GF WK Archaeal_H/ACA_sRNA
#=GF SQ 5

AE009441.1/1001407-1001347 UUAGCCCUAGGUAACACCCCUG-AGCGGGGGCGGAUGAGCCUGGCGGGUUACCCCGGCCAAA
CP001014.1/643411-643351   ACUGCCCUAGGCAACACCCCUG-UAGGGGGGCGUAUGAGCCUGGCGGGUUACCCCGGCCAUA
CP000561.1/585996-585937   AAUGCCCUAGGCAACACCCCCG-AGU-GGGGCGAAUGAGCCUGGCGGGUUACCCCGGCCAAA
CP000660.1/700317-700377   AACACCCUGGGCAACACCCCUG-UAGGGGGGCGAAUGAGCCUGGUGGGUUACCCCGGCCAUA
CP003316.1/1347629-1347568 AACACCCUGGGCAACACCCCUGUAGGGGGGGCGAAUGAGCCUGGUGGGUUACCCCGGCCAUA
#=GC SS_cons               :::<<<--<<<<<<--<<<<<_.___>>>>>----->>>>>>>>>:::::::::::::::::
#=GC RF                    AauGCCCUaGGCaaCACCCCuG.agggGGGGCGaAUgaGCCuGGCGGGUUACCCCGGCCAuA
//
