# STOCKHOLM 1.0
#=GF ID PyrR201
#=GF AC RF02801
#=GF DE Pyrobaculum sRNA 201
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 49.0
#=GF NC 37.0
#=GF TC 51.6
#=GF SE Argasinska J
#=GF SS Predicted; 22282340
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF RN [1]
#=GF RM 22282340
#=GF RT Discovery of Pyrobaculum small RNA families with atypical pseudouridine
#=GF RT guide RNA features.
#=GF RA Bernick DL, Dennis PP, Hochsmann M, Lowe TM
#=GF RL RNA. 2012;18:402-411.
#=GF CC Has weak conservation of the canonical pseudouridylation guide sRNA
#=GF CC features among the Pyrobaculum species. 
#=GF WK Archaeal_H/ACA_sRNA
#=GF SQ 5

AE009441.1/648915-648982   GCCCCUGGCGUGGGGCGUCGAGGCGCCGCCACGGCCGCUGUGAAAACGCCCCCUCCAAGGGGCGCACA
CP001014.1/177705-177772   GCCCCUGGCGUGGGGCGUCGAGGCGCCGCGUGGGCGGCUGUGAAAAUGCCCCCUCCAAGGGGCGGACA
CP000504.1/1136982-1136915 GCCCCUGGCGUGGGGUGUCGAGGCGCCGUGUUGGCGGCUAUGAAAACGCCCCCUCCGAGGGGCAGAUA
CP000660.1/236305-236238   GCCCCUGGCGUGGGGUGUCGAGUCGCCGUGUGGGCGGCUGUGAAAACGCCCCCUCCGCGGGGCGUACA
CP000561.1/649113-649180   GCCCCUGGCGUGGGGUGUCGAGCCGCCGCACAGGCGCCGGUGAACACGCCCCCUCCAAGGGGCGUACA
#=GC SS_cons               <<<<<<-----<<<<<<<<<<--<<<<<___>>>>->---->>>->>>>>>>----->>>>>>:::::
#=GC RF                    GCCCCuGGCGUGGGGcGUcgaGgCGCCgcgucGGCGGCUGUgaaAACgCCCCCUCCaaGGGGCGuACA
//
