INFERNAL1/a [1.1.5 | Sep 2023] NAME Pab91 ACC RF02795 DESC Pab91 RNA STATES 175 NODES 40 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 08:54:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02795/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.913086 CKSUM 1457797710 NULL 0.000 0.000 0.000 0.000 GA 71.00 TC 72.00 NC 49.10 EFP7GF -11.4896 0.71938 ECMLC 0.59396 -6.81313 3.25524 1600000 474648 0.002528 ECMGC 0.39796 -18.85337 -2.83174 1600000 235021 0.001702 ECMLI 0.57694 -5.60656 4.16797 1600000 337540 0.003555 ECMGI 0.42423 -13.63435 0.02133 1600000 131220 0.003048 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 72 91 -6.858 -8.104 -0.081 -4.557 IL 1 1 2 1 4 1 2 73 93 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 57 - A - - MR 3 2 3 5 3 1 4 72 91 -8.349 -0.019 -6.667 1.716 -2.359 -1.992 -1.900 D 4 2 3 5 3 0 0 70 90 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 3 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 56 - C - - MR 6 5 3 8 3 1 4 71 90 -8.349 -0.019 -6.667 -1.726 1.620 -2.550 -1.143 D 7 5 3 8 3 0 0 69 89 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 2 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 55 - A - - MR 9 8 3 11 5 1 4 70 89 -7.088 -0.039 -6.903 -7.116 -8.007 1.716 -2.359 -1.992 -1.900 D 10 8 3 11 5 0 0 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 1 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 1 54 g c - - MP 12 11 3 16 6 2 5 69 88 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -3.505 -2.761 -3.477 0.832 -3.204 -4.114 1.817 -3.567 -3.544 2.754 -3.953 -0.523 0.748 -3.531 -0.801 -2.401 ML 13 11 3 16 6 1 1 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 1 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 1 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 53 C G - - MP 18 17 6 22 6 2 5 67 86 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 19 17 6 22 6 1 1 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 1 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 52 C G - - MP 24 23 6 28 6 2 4 65 84 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 25 23 6 28 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 51 C G - - MP 30 29 6 34 6 2 4 63 82 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 31 29 6 34 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 50 U A - - MP 36 35 6 40 6 2 4 61 80 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.183 -4.008 -4.022 -0.303 -2.965 -4.587 1.363 -3.661 -4.027 -0.048 -4.400 -1.907 3.325 -4.335 -0.642 -2.852 ML 37 35 6 40 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 49 C G - - MP 42 41 6 46 6 2 4 59 78 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 43 41 6 46 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 48 C G - - MP 48 47 6 52 6 2 3 57 76 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 49 47 6 52 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 47 C G - - MP 54 53 6 58 6 2 3 55 74 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 55 53 6 58 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 46 C G - - MP 60 59 6 64 4 2 2 53 72 -6.941 -7.148 -0.053 -5.562 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 61 59 6 64 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 53 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 52 71 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 55 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - U - - - ML 66 65 6 68 3 1 1 50 69 -7.958 -0.021 -6.612 -1.474 -1.473 -2.207 1.615 D 67 65 6 68 3 0 0 49 68 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - C - - - ML 69 68 3 71 3 1 1 49 68 -7.958 -0.021 -6.612 -1.726 1.620 -2.550 -1.143 D 70 68 3 71 3 0 0 48 67 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - U - - - ML 72 71 3 74 3 1 1 48 67 -7.958 -0.021 -6.612 -1.474 -1.473 -2.207 1.615 D 73 71 3 74 3 0 0 47 66 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - C - - - ML 75 74 3 77 3 1 1 47 66 -7.958 -0.021 -6.612 -1.726 1.620 -2.550 -1.143 D 76 74 3 77 3 0 0 46 65 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 78 77 3 80 3 1 1 46 65 -7.958 -0.021 -6.612 1.716 -2.359 -1.992 -1.900 D 79 77 3 80 3 0 0 45 64 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - C - - - ML 81 80 3 83 3 1 1 45 64 -8.349 -0.019 -6.667 -1.726 1.620 -2.550 -1.143 D 82 80 3 83 3 0 0 44 62 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 45 - C - - MR 84 83 3 86 3 1 1 44 63 -8.349 -0.019 -6.667 -1.726 1.620 -2.550 -1.143 D 85 83 3 86 3 0 0 42 61 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 44 - U - - MR 87 86 3 89 3 1 1 43 62 -8.349 -0.019 -6.667 -1.474 -1.473 -2.207 1.615 D 88 86 3 89 3 0 0 41 60 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 43 - G - - MR 90 89 3 92 3 1 1 42 61 -8.349 -0.019 -6.667 -1.567 -2.786 1.721 -2.172 D 91 89 3 92 3 0 0 40 59 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 42 - G - - MR 93 92 3 95 3 1 1 41 60 -8.349 -0.019 -6.667 -1.567 -2.786 1.721 -2.172 D 94 92 3 95 3 0 0 39 58 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 41 - C - - MR 96 95 3 98 5 1 1 40 59 -7.088 -0.039 -6.903 -7.116 -8.007 -1.726 1.620 -2.550 -1.143 D 97 95 3 98 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 40 a g - - MP 99 98 3 103 6 2 2 39 58 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -3.552 -3.011 2.846 0.550 -2.965 -4.375 1.198 -3.364 -3.451 0.615 -3.904 -0.689 0.492 -3.957 -0.725 -2.427 ML 100 98 3 103 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 39 C G - - MP 105 104 6 109 6 2 2 37 56 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 106 104 6 109 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 38 C G - - MP 111 110 6 115 6 2 2 35 54 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 112 110 6 115 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 37 C G - - MP 117 116 6 121 6 2 2 33 52 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 118 116 6 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 36 C G - - MP 123 122 6 127 6 2 2 31 50 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 124 122 6 127 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 35 C G - - MP 129 128 6 133 6 2 2 29 48 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.543 -4.448 -4.234 -0.681 -2.953 -4.647 3.549 -3.763 -4.283 -0.440 -4.545 -2.395 0.562 -4.613 -0.659 -3.123 ML 130 128 6 133 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 34 G C - - MP 135 134 6 139 6 2 2 27 46 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -4.734 -3.090 -4.832 0.206 -5.221 -4.691 -0.588 -5.074 -4.323 3.636 -4.660 -0.789 -0.973 -4.462 -2.624 -3.709 ML 136 134 6 139 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 33 g c - - MP 141 140 6 145 6 2 2 25 44 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -3.183 -2.870 -3.197 0.692 -2.663 -3.923 1.594 -3.163 -3.231 1.974 -3.690 -0.790 1.076 -3.368 1.830 -2.161 ML 142 140 6 145 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 32 g a - - MP 147 146 6 151 6 2 2 23 42 -9.105 -9.044 -0.021 -7.821 -8.100 -8.496 -3.597 -2.920 -3.594 0.641 -3.159 -4.546 1.020 -3.451 2.872 0.810 -3.940 -0.528 0.340 -4.094 -0.907 -2.467 ML 148 146 6 151 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 31 a g - - MP 153 152 6 157 4 2 2 21 40 -6.941 -7.148 -0.053 -5.562 -3.552 -3.011 2.846 0.550 -2.965 -4.375 1.198 -3.364 -3.451 0.615 -3.904 -0.689 0.492 -3.957 -0.725 -2.427 ML 154 152 6 157 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - g - - - ML 159 158 6 161 3 1 1 18 36 -7.958 -0.021 -6.612 0.320 -1.516 0.906 -0.921 D 160 158 6 161 3 0 0 17 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - a - - - ML 162 161 3 164 3 1 1 16 35 -7.958 -0.021 -6.612 0.378 -0.188 -0.034 -0.242 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - g - - - ML 165 164 3 167 3 1 1 15 33 -7.958 -0.021 -6.612 0.343 -1.505 0.886 -0.911 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - G - - - ML 168 167 3 170 3 1 1 13 31 -7.958 -0.021 -6.612 -1.567 -2.786 1.721 -2.172 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.474 -1.473 -2.207 1.615 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Pab91 ACC RF02795 DESC Pab91 RNA LENG 57 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 08:54:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02795/CM NSEQ 3 EFFN 2.715820 CKSUM 1457797710 STATS LOCAL MSV -8.4747 0.71938 STATS LOCAL VITERBI -8.6518 0.71938 STATS LOCAL FORWARD -3.3795 0.71938 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.77735 1.11955 1.06684 1.83012 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 0.00000 * 1 2.10880 1.43779 0.68842 1.97476 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 2 3.37159 0.20109 3.16877 2.24649 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 3 3.37309 0.20095 3.16951 2.24676 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 4 3.37300 0.20096 3.16947 2.24674 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 5 3.16885 2.05448 2.94135 0.25232 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 6 3.37138 0.20111 3.16866 2.24645 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 7 3.37049 0.20119 3.16821 2.24629 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 8 3.36969 0.20126 3.16781 2.24614 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 9 3.36899 0.20133 3.16746 2.24601 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 10 2.77351 2.70994 3.29700 0.18150 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 11 3.05599 0.16367 3.63128 2.55853 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 12 2.77351 2.70994 3.29700 0.18150 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 13 3.05599 0.16367 3.63128 2.55853 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 14 0.12859 3.41235 3.11976 3.13423 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 15 3.05599 0.16367 3.63128 2.55853 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 16 0.41152 2.07155 2.24745 2.24717 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 17 3.37545 0.20074 3.17070 2.24718 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 18 3.37549 0.20073 3.17072 2.24719 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 19 3.37460 0.20082 3.17027 2.24703 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 20 3.37342 0.20092 3.16968 2.24682 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 21 3.37223 0.20103 3.16908 2.24660 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 22 2.69558 3.41218 0.14570 3.34936 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 23 2.23920 1.70233 1.20605 0.88717 23 u - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 24 2.36529 2.21022 0.35412 2.35798 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 25 0.41178 2.07128 2.24690 2.24638 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 26 1.16868 2.63360 0.67296 2.23299 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 27 1.11917 1.49175 1.37481 1.63176 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 28 1.14937 2.62496 0.68804 2.22414 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 29 2.87611 3.77687 0.12136 3.35128 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 30 2.77351 2.70994 3.29700 0.18150 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 31 2.52310 2.55868 0.32028 2.15039 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 32 0.42556 2.43089 2.03764 2.05337 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 33 2.01672 1.29454 0.78374 1.99371 33 g - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 34 3.54184 0.17335 3.25042 2.39210 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 35 2.52537 3.33640 0.17332 3.13417 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 36 2.52611 3.33747 0.17314 3.13542 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 37 2.52705 3.33884 0.17291 3.13702 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 38 2.52830 3.34064 0.17260 3.13913 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 39 2.52998 3.34308 0.17220 3.14198 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 40 2.53180 2.56291 0.31828 2.15409 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 41 3.05599 0.16367 3.63128 2.55853 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 42 2.87611 3.77687 0.12136 3.35128 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 43 2.87611 3.77687 0.12136 3.35128 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 44 2.77351 2.70994 3.29700 0.18150 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 45 3.05599 0.16367 3.63128 2.55853 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 46 2.52377 3.33410 0.17371 3.13147 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 47 2.52411 3.33458 0.17362 3.13204 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 48 2.52453 3.33519 0.17352 3.13275 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 49 2.52506 3.33595 0.17339 3.13364 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 50 0.28603 3.12917 1.89127 2.91648 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 51 2.52659 3.33816 0.17302 3.13623 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 52 2.52772 3.33981 0.17274 3.13816 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 53 2.52928 3.34206 0.17237 3.14079 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 54 2.22597 0.75214 1.33329 1.85104 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 55 0.12859 3.41235 3.11976 3.13423 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 56 3.05599 0.16367 3.63128 2.55853 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.03933 3.94842 3.94842 1.46634 0.26236 1.09861 0.40547 57 0.12859 3.41235 3.11976 3.13423 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.01986 3.92895 * 1.46634 0.26236 0.00000 * //