INFERNAL1/a [1.1.5 | Sep 2023] NAME asR3 ACC RF02793 DESC Pyrobaculum asRNA3 STATES 180 NODES 46 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 02:51:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02793/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.370117 CKSUM 1198127860 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 71.00 NC 40.10 EFP7GF -6.0683 0.72360 ECMLC 0.53206 -10.64211 0.88491 1600000 553010 0.002170 ECMGC 0.35740 -19.11753 -3.36992 1600000 111259 0.003595 ECMLI 0.48588 -10.34024 1.80982 1600000 439587 0.002730 ECMGI 0.38736 -14.47381 -0.66118 1600000 84280 0.004746 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 73 93 -7.118 -7.325 -0.047 -5.739 IL 1 1 2 1 4 1 16 77 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 15 73 93 -8.123 -0.018 -6.777 0.389 -0.177 -0.002 -0.309 D 4 2 3 5 3 0 12 72 92 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 14 72 92 -8.123 -0.018 -6.777 -1.917 -3.186 1.790 -2.573 D 7 5 3 8 3 0 12 71 91 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 13 71 91 -8.123 -0.018 -6.777 0.998 -0.160 -1.224 -0.557 D 10 8 3 11 3 0 11 70 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 12 70 90 -8.123 -0.018 -6.777 -1.784 -1.729 -2.532 1.694 D 13 11 3 14 3 0 11 69 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 2 1 11 69 89 -8.545 -0.004 -2.131 1.714 -2.962 -1.466 D 16 14 3 17 2 0 10 68 88 -8.445 -0.004 IL 17 17 3 17 2 1 12 70 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 108 0 10 68 88 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 45 64 -0.042 -6.922 -6.329 -6.969 [ MATP 8 ] 6 35 G C - - MP 20 19 1 24 6 2 2 45 64 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -5.055 -3.245 -5.190 -0.013 -5.673 -4.814 -0.959 -5.451 -4.526 3.705 -4.842 -0.958 -1.336 -4.672 -3.014 -4.062 ML 21 19 1 24 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 34 C G - - MP 26 25 6 30 6 2 2 43 62 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 27 25 6 30 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 33 G C - - MP 32 31 6 36 6 2 2 41 60 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -5.055 -3.245 -5.190 -0.013 -5.673 -4.814 -0.959 -5.451 -4.526 3.705 -4.842 -0.958 -1.336 -4.672 -3.014 -4.062 ML 33 31 6 36 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 32 G C - - MP 38 37 6 42 6 2 2 39 58 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -5.055 -3.245 -5.190 -0.013 -5.673 -4.814 -0.959 -5.451 -4.526 3.705 -4.842 -0.958 -1.336 -4.672 -3.014 -4.062 ML 39 37 6 42 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 31 C G - - MP 44 43 6 48 6 2 2 37 56 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 45 43 6 48 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 30 g c - - MP 50 49 6 54 6 2 2 35 54 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -3.638 -2.846 -3.596 0.756 -3.335 -4.217 1.844 -3.691 -3.671 2.816 -4.069 -0.593 0.641 -3.638 -0.911 -2.513 ML 51 49 6 54 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 29 G C - - MP 56 55 6 60 4 2 2 33 52 -2.242 -7.325 -0.389 -5.739 -5.055 -3.245 -5.190 -0.013 -5.673 -4.814 -0.959 -5.451 -4.526 3.705 -4.842 -0.958 -1.336 -4.672 -3.014 -4.062 ML 57 55 6 60 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 31 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 60 60 5 60 4 1 1 32 51 -2.690 -3.373 -0.452 -5.858 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - g - - - ML 62 61 6 64 5 1 1 29 48 -7.233 -0.035 -7.048 -7.260 -8.152 0.352 -1.664 0.952 -1.078 D 63 61 6 64 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 64 64 3 64 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 28 g u - - MP 65 64 3 69 6 2 2 28 47 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -2.865 -1.539 -3.375 0.975 -3.659 -3.529 0.424 -3.290 -2.749 1.259 1.140 2.432 0.004 -3.378 -1.420 -2.107 ML 66 64 3 69 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 3 69 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 3 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 27 C G - - MP 71 70 6 75 4 2 2 26 45 -7.118 -7.325 -0.047 -5.739 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 72 70 6 75 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 77 76 6 79 5 1 1 24 42 -7.233 -0.035 -7.048 -7.260 -8.152 -2.131 1.714 -2.962 -1.466 D 78 76 6 79 5 0 0 22 41 -4.959 -0.803 -4.221 -2.596 -2.508 IL 79 79 3 79 5 1 1 24 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 26 G U - - MP 80 79 3 84 6 2 2 23 41 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -3.822 -2.534 -4.004 0.998 -4.887 -5.623 -0.456 -4.002 -3.617 1.077 -4.151 3.270 -0.808 -4.777 -2.397 -2.666 ML 81 79 3 84 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 3 84 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 3 84 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 25 C G - - MP 86 85 6 90 4 2 2 20 39 -7.118 -7.325 -0.047 -5.739 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 87 85 6 90 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 90 90 5 90 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - C - - - ML 92 91 6 94 3 1 1 17 36 -8.123 -0.329 -2.320 -2.131 1.714 -2.962 -1.466 D 93 91 6 94 3 0 0 17 35 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - U - - - ML 95 94 3 97 3 1 1 16 35 -7.817 -0.023 -6.471 -1.219 -1.263 -1.937 1.532 D 96 94 3 97 3 0 0 15 34 -7.746 -0.381 -2.137 IL 97 97 3 97 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 98 97 3 100 3 1 1 15 33 -8.123 -0.018 -6.777 -0.882 0.087 -1.651 1.054 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 101 100 3 103 3 1 1 13 31 -8.123 -0.018 -6.777 1.780 -2.694 -2.293 -2.268 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - A - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 1.047 -1.543 0.116 -0.982 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 108 18 1 109 3 0 0 37 56 -8.123 -0.018 -6.777 IL 109 109 2 109 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - U - - - ML 110 109 2 112 3 1 1 37 56 -8.123 -0.018 -6.777 -1.784 -1.729 -2.532 1.694 D 111 109 2 112 3 0 0 36 55 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - C - - - ML 113 112 3 115 3 1 1 36 55 -8.123 -0.018 -6.777 -2.131 1.714 -2.962 -1.466 D 114 112 3 115 3 0 0 35 54 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - A - - - ML 116 115 3 118 3 1 1 35 54 -8.123 -0.018 -6.777 1.780 -2.694 -2.293 -2.268 D 117 115 3 118 3 0 0 34 53 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - U - - - ML 119 118 3 121 3 1 1 34 53 -8.123 -0.018 -6.777 -1.784 -1.729 -2.532 1.694 D 120 118 3 121 3 0 0 33 52 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - u - - - ML 122 121 3 124 3 1 1 33 51 -8.123 -0.018 -6.777 -0.324 -0.031 -0.115 0.378 D 123 121 3 124 3 0 0 31 50 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - U - - - ML 125 124 3 127 5 1 1 32 50 -7.233 -0.035 -7.048 -7.260 -8.152 -1.784 -1.729 -2.532 1.694 D 126 124 3 127 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 58 g u - - MP 128 127 3 132 6 2 2 31 49 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -2.961 -1.830 -3.339 1.015 -3.667 -3.861 0.322 -3.357 1.195 1.208 -3.222 2.488 -0.021 -3.505 -1.482 -2.147 ML 129 127 3 132 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 43 57 C G - - MP 134 133 6 138 6 2 2 29 47 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 135 133 6 138 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 44 56 C G - - MP 140 139 6 144 6 2 2 26 45 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 141 139 6 144 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 45 55 C G - - MP 146 145 6 150 6 2 2 24 43 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 147 145 6 150 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 46 54 C G - - MP 152 151 6 156 6 2 2 22 41 -9.175 -9.114 -0.020 -7.891 -8.170 -8.565 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 153 151 6 156 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 47 53 C G - - MP 158 157 6 162 4 2 2 20 39 -7.118 -7.325 -0.047 -5.739 -4.899 -4.835 -4.529 -1.039 -3.174 -4.894 3.646 -4.019 -4.592 -0.843 -4.813 -2.789 0.302 -4.945 -0.891 -3.420 ML 159 157 6 162 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 161 157 6 162 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 162 162 5 162 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 163 163 6 163 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - a - - - ML 164 163 6 166 3 1 1 17 36 -8.123 -0.018 -6.777 0.325 -0.896 -0.012 0.285 D 165 163 6 166 3 0 0 17 35 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - c - - - ML 167 166 3 169 3 1 1 16 35 -8.123 -0.018 -6.777 0.235 0.743 -1.365 -0.395 D 168 166 3 169 3 0 0 16 34 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 50 - U - - - ML 170 169 3 172 3 1 1 15 33 -8.123 -0.018 -6.777 -0.874 0.121 -1.645 1.034 D 171 169 3 172 3 0 0 15 33 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 51 - u - - - ML 173 172 3 175 3 1 1 13 31 -8.123 -0.329 -2.320 0.270 0.031 -1.094 0.382 D 174 172 3 175 3 0 0 13 32 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 52 - C - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 -1.390 1.514 -2.199 -0.876 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME asR3 ACC RF02793 DESC Pyrobaculum asRNA3 LENG 57 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 02:51:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02793/CM NSEQ 3 EFFN 2.516602 CKSUM 1198127860 STATS LOCAL MSV -8.2846 0.72360 STATS LOCAL VITERBI -8.9351 0.72360 STATS LOCAL FORWARD -3.1558 0.72360 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.89018 1.11163 1.16367 1.57217 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 1.11575 1.50441 1.38156 1.61448 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.78529 3.67455 0.13451 3.24975 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.68265 1.49302 2.26044 1.79742 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.68812 2.63885 3.20857 0.19829 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.94709 0.18219 3.52337 2.47028 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.64535 3.33229 0.15613 3.27397 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.28916 0.21976 3.06989 2.17527 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.64065 3.32652 0.15711 3.26598 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.63942 3.32500 0.15737 3.26388 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.28063 0.22061 3.06574 2.17376 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.08547 1.43249 0.70768 1.93620 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.63731 3.32242 0.15782 3.26031 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.26837 1.53181 3.95124 0.16933 1.85938 1.09861 0.40547 13 1.14199 2.57478 0.71218 2.17092 14 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 1.85589 2.35639 0.43288 2.29971 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.28037 0.22064 3.06561 2.17371 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.94709 0.18219 3.52337 2.47028 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 1.95799 2.98474 0.28714 2.84904 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.28247 0.22043 3.06664 2.17409 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.94709 0.18219 3.52337 2.47028 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.26837 3.95124 1.53181 1.46634 0.26236 1.09861 0.40547 20 2.28061 2.30230 2.78158 0.30679 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04908 3.73195 3.73195 1.46634 0.26236 0.16377 1.89006 21 2.02840 1.32100 2.56398 0.64514 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.14164 3.32236 3.03835 3.03483 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.64974 2.48939 1.29940 2.10242 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.44811 3.22773 0.19144 3.03400 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.04087 1.97622 2.77390 0.28609 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.44607 3.22488 0.19198 3.03062 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.49423 1.74725 1.37946 0.71035 28 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.45636 0.18735 3.15812 2.33511 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.18161 0.77582 1.32516 1.82604 30 c - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.45091 3.23165 0.19068 3.03866 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.45728 0.18728 3.15853 2.33528 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.45530 0.18744 3.15764 2.33490 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.44865 3.22849 0.19129 3.03491 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 3.43849 0.18886 3.15004 2.33168 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.68812 2.63885 3.20857 0.19829 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.94709 0.18219 3.52337 2.47028 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.14164 3.32236 3.03835 3.03483 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.68812 2.63885 3.20857 0.19829 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 1.62410 1.40218 1.46041 1.12482 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.68812 2.63885 3.20857 0.19829 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 1.86458 2.43896 0.41429 2.33330 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.28582 0.22009 3.06827 2.17468 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.28369 0.22031 3.06723 2.17430 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.28187 0.22049 3.06634 2.17398 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.28033 0.22064 3.06559 2.17371 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.27906 0.22077 3.06497 2.17348 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 1.16042 2.02044 1.38980 1.18770 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 1.22468 0.85405 2.36146 1.68107 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.02305 1.29688 2.55986 0.65962 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 1.19772 1.35848 2.15932 1.12189 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.26837 3.95124 1.53181 1.46634 0.26236 1.09861 0.40547 51 2.41489 0.31412 2.97905 2.04522 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04908 3.73195 3.73195 1.46634 0.26236 0.16377 1.89006 52 2.45104 3.23184 0.19065 3.03888 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.45138 3.23232 0.19056 3.03945 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.45165 3.23270 0.19048 3.03991 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.45173 3.23281 0.19046 3.04003 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.45135 3.23228 0.19056 3.03941 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 1.50626 1.80932 2.24498 0.67616 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //