INFERNAL1/a [1.1.4 | Dec 2020] NAME asR3 ACC RF02793 DESC Pyrobaculum asRNA3 STATES 180 NODES 46 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 25 14:05:33 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.375977 CKSUM 1198127860 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.20 NC 37.20 EFP7GF -6.0529 0.72362 ECMLC 0.53319 -10.61311 0.88892 1600000 552844 0.002171 ECMGC 0.35736 -19.12800 -3.37562 1600000 111380 0.003591 ECMLI 0.48650 -10.32892 1.80796 1600000 440082 0.002727 ECMGI 0.39088 -14.32236 -0.63538 1600000 84245 0.004748 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 73 93 -7.120 -7.327 -0.047 -5.741 IL 1 1 2 1 4 1 16 77 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 15 73 93 -8.125 -0.018 -6.779 0.402 -0.185 -0.010 -0.311 D 4 2 3 5 3 0 12 72 92 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 14 72 92 -8.125 -0.018 -6.779 -1.921 -3.191 1.790 -2.578 D 7 5 3 8 3 0 12 71 91 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 13 71 91 -8.125 -0.018 -6.779 1.006 -0.171 -1.227 -0.564 D 10 8 3 11 3 0 11 70 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 12 70 90 -8.125 -0.018 -6.779 -1.788 -1.732 -2.535 1.695 D 13 11 3 14 3 0 11 69 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 2 1 11 69 89 -8.548 -0.004 -2.136 1.715 -2.967 -1.470 D 16 14 3 17 2 0 10 68 88 -8.445 -0.004 IL 17 17 3 17 2 1 12 70 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 108 0 10 68 88 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 45 64 -0.042 -6.923 -6.330 -6.970 [ MATP 8 ] 6 35 G C - - MP 20 19 1 24 6 2 2 45 64 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -5.059 -3.247 -5.195 -0.016 -5.678 -4.815 -0.964 -5.455 -4.529 3.706 -4.844 -0.960 -1.341 -4.674 -3.019 -4.067 ML 21 19 1 24 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 34 C G - - MP 26 25 6 30 6 2 2 43 62 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 27 25 6 30 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 33 G C - - MP 32 31 6 36 6 2 2 41 60 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -5.059 -3.247 -5.195 -0.016 -5.678 -4.815 -0.964 -5.455 -4.529 3.706 -4.844 -0.960 -1.341 -4.674 -3.019 -4.067 ML 33 31 6 36 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 32 G C - - MP 38 37 6 42 6 2 2 39 58 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -5.059 -3.247 -5.195 -0.016 -5.678 -4.815 -0.964 -5.455 -4.529 3.706 -4.844 -0.960 -1.341 -4.674 -3.019 -4.067 ML 39 37 6 42 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 31 C G - - MP 44 43 6 48 6 2 2 37 56 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 45 43 6 48 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 30 g c - - MP 50 49 6 54 6 2 2 35 54 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -3.632 -2.851 -3.591 0.753 -3.318 -4.215 1.868 -3.679 -3.665 2.800 -4.064 -0.599 0.655 -3.637 -0.896 -2.507 ML 51 49 6 54 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 29 G C - - MP 56 55 6 60 4 2 2 33 52 -2.210 -7.327 -0.398 -5.741 -5.059 -3.247 -5.195 -0.016 -5.678 -4.815 -0.964 -5.455 -4.529 3.706 -4.844 -0.960 -1.341 -4.674 -3.019 -4.067 ML 57 55 6 60 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 31 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 60 60 5 60 4 1 1 32 51 -2.707 -3.391 -0.445 -5.876 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - g - - - ML 62 61 6 64 5 1 1 29 48 -7.235 -0.035 -7.050 -7.262 -8.154 0.374 -1.657 0.934 -1.071 D 63 61 6 64 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 64 64 3 64 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 28 g u - - MP 65 64 3 69 6 2 2 28 47 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -2.871 -1.550 -3.377 0.974 -3.662 -3.541 0.419 -3.294 -2.756 1.256 1.176 2.422 0.001 -3.385 -1.424 -2.111 ML 66 64 3 69 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 3 69 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 3 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 27 C G - - MP 71 70 6 75 4 2 2 26 45 -7.120 -7.327 -0.047 -5.741 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 72 70 6 75 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 77 76 6 79 5 1 1 24 42 -7.235 -0.035 -7.050 -7.262 -8.154 -2.136 1.715 -2.967 -1.470 D 78 76 6 79 5 0 0 22 41 -4.959 -0.803 -4.221 -2.596 -2.508 IL 79 79 3 79 5 1 1 24 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 26 G U - - MP 80 79 3 84 6 2 2 22 41 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -3.824 -2.536 -4.006 0.996 -4.892 -5.628 -0.460 -4.005 -3.619 1.073 -4.154 3.272 -0.812 -4.781 -2.401 -2.668 ML 81 79 3 84 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 3 84 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 3 84 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 25 C G - - MP 86 85 6 90 4 2 2 20 39 -7.120 -7.327 -0.047 -5.741 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 87 85 6 90 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 90 90 5 90 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - C - - - ML 92 91 6 94 3 1 1 17 36 -8.125 -0.337 -2.289 -2.136 1.715 -2.967 -1.470 D 93 91 6 94 3 0 0 17 35 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - U - - - ML 95 94 3 97 3 1 1 16 35 -7.811 -0.023 -6.465 -1.208 -1.255 -1.926 1.529 D 96 94 3 97 3 0 0 15 34 -7.769 -0.374 -2.161 IL 97 97 3 97 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 98 97 3 100 3 1 1 15 33 -8.125 -0.018 -6.779 -0.886 0.077 -1.655 1.061 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 101 100 3 103 3 1 1 13 31 -8.125 -0.018 -6.779 1.781 -2.698 -2.297 -2.273 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - A - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 1.034 -1.542 0.140 -0.980 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 108 18 1 109 3 0 0 37 56 -8.125 -0.018 -6.779 IL 109 109 2 109 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - U - - - ML 110 109 2 112 3 1 1 37 56 -8.125 -0.018 -6.779 -1.788 -1.732 -2.535 1.695 D 111 109 2 112 3 0 0 36 55 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - C - - - ML 113 112 3 115 3 1 1 36 55 -8.125 -0.018 -6.779 -2.136 1.715 -2.967 -1.470 D 114 112 3 115 3 0 0 35 54 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - A - - - ML 116 115 3 118 3 1 1 35 54 -8.125 -0.018 -6.779 1.781 -2.698 -2.297 -2.273 D 117 115 3 118 3 0 0 34 53 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - U - - - ML 119 118 3 121 3 1 1 34 53 -8.125 -0.018 -6.779 -1.788 -1.732 -2.535 1.695 D 120 118 3 121 3 0 0 33 52 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - u - - - ML 122 121 3 124 3 1 1 33 51 -8.125 -0.018 -6.779 -0.323 -0.041 -0.095 0.370 D 123 121 3 124 3 0 0 31 50 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - U - - - ML 125 124 3 127 5 1 1 32 50 -7.235 -0.035 -7.050 -7.262 -8.154 -1.788 -1.732 -2.535 1.695 D 126 124 3 127 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 42 58 g u - - MP 128 127 3 132 6 2 2 31 49 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -2.964 -1.826 -3.345 1.013 -3.676 -3.861 0.317 -3.360 1.183 1.206 -3.221 2.498 -0.028 -3.510 -1.489 -2.150 ML 129 127 3 132 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 43 57 C G - - MP 134 133 6 138 6 2 2 28 47 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 135 133 6 138 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 44 56 C G - - MP 140 139 6 144 6 2 2 26 45 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 141 139 6 144 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 45 55 C G - - MP 146 145 6 150 6 2 2 24 43 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 147 145 6 150 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 46 54 C G - - MP 152 151 6 156 6 2 2 22 41 -9.176 -9.115 -0.020 -7.891 -8.171 -8.566 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 153 151 6 156 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 47 53 C G - - MP 158 157 6 162 4 2 2 20 39 -7.120 -7.327 -0.047 -5.741 -4.904 -4.840 -4.533 -1.043 -3.177 -4.897 3.647 -4.023 -4.596 -0.848 -4.816 -2.793 0.299 -4.949 -0.894 -3.424 ML 159 157 6 162 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 161 157 6 162 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 162 162 5 162 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 163 163 6 163 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - a - - - ML 164 163 6 166 3 1 1 17 36 -8.125 -0.018 -6.779 0.318 -0.893 -0.023 0.299 D 165 163 6 166 3 0 0 17 35 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - c - - - ML 167 166 3 169 3 1 1 16 35 -8.125 -0.018 -6.779 0.224 0.754 -1.372 -0.397 D 168 166 3 169 3 0 0 16 34 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 50 - U - - - ML 170 169 3 172 3 1 1 15 33 -8.125 -0.018 -6.779 -0.872 0.142 -1.644 1.021 D 171 169 3 172 3 0 0 15 33 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 51 - u - - - ML 173 172 3 175 3 1 1 13 31 -8.125 -0.337 -2.289 0.286 0.022 -1.091 0.374 D 174 172 3 175 3 0 0 13 32 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 52 - C - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 -1.376 1.509 -2.185 -0.865 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME asR3 ACC RF02793 DESC Pyrobaculum asRNA3 LENG 57 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 25 14:05:33 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 3 EFFN 2.516602 CKSUM 1198127860 STATS LOCAL MSV -8.2846 0.72362 STATS LOCAL VITERBI -8.9380 0.72362 STATS LOCAL FORWARD -3.1532 0.72362 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.88938 1.11189 1.16350 1.57259 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 1.10639 1.51024 1.38784 1.61556 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.78529 3.67455 0.13451 3.24975 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.67764 1.50121 2.26167 1.80092 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.68812 2.63885 3.20857 0.19829 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.94709 0.18219 3.52337 2.47028 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.64535 3.33229 0.15613 3.27397 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.28916 0.21976 3.06989 2.17527 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.64065 3.32652 0.15711 3.26598 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.63942 3.32500 0.15737 3.26388 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.28063 0.22061 3.06574 2.17376 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.08616 1.41598 0.71872 1.92572 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.63731 3.32242 0.15782 3.26031 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.27406 1.51193 3.95124 0.16615 1.87680 1.09861 0.40547 13 1.12654 2.56809 0.72502 2.16413 14 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 1.85675 2.35747 0.43257 2.29936 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.28036 0.22064 3.06561 2.17371 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.94709 0.18219 3.52337 2.47028 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 1.95799 2.98474 0.28714 2.84904 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.28247 0.22043 3.06664 2.17409 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.94709 0.18219 3.52337 2.47028 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.27406 3.95124 1.51193 1.46634 0.26236 1.09861 0.40547 20 2.27095 2.29440 2.77134 0.31008 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04935 3.72653 3.72653 1.46634 0.26236 0.16079 1.90696 21 2.03018 1.32867 2.56537 0.64061 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.14164 3.32236 3.03835 3.03483 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.65939 2.48733 1.28317 2.09929 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.44811 3.22772 0.19144 3.03400 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.04086 1.97622 2.77390 0.28609 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.44606 3.22486 0.19199 3.03060 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.49411 1.74880 1.36675 0.71639 28 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.45636 0.18735 3.15812 2.33511 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.17101 0.78738 1.30923 1.82714 30 c - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.45091 3.23165 0.19068 3.03866 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.45728 0.18728 3.15853 2.33528 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.45530 0.18744 3.15764 2.33490 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.44865 3.22849 0.19129 3.03491 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 3.43849 0.18886 3.15004 2.33168 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.68812 2.63885 3.20857 0.19829 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.94709 0.18219 3.52337 2.47028 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.14164 3.32236 3.03835 3.03483 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.68812 2.63885 3.20857 0.19829 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 1.62270 1.40954 1.44607 1.13046 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.68812 2.63885 3.20857 0.19829 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 1.86435 2.43891 0.41426 2.33390 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.28582 0.22009 3.06827 2.17468 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.28369 0.22031 3.06723 2.17430 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.28187 0.22049 3.06634 2.17398 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.28033 0.22064 3.06559 2.17371 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.27906 0.22077 3.06497 2.17348 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 1.16531 2.01789 1.39739 1.17766 48 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 1.23265 0.84728 2.36532 1.68210 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.01995 1.28197 2.55752 0.66874 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 1.18705 1.36535 2.15688 1.12730 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.27406 3.95124 1.51193 1.46634 0.26236 1.09861 0.40547 51 2.40218 0.31842 2.96576 2.03516 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04935 3.72653 3.72653 1.46634 0.26236 0.16079 1.90696 52 2.45104 3.23184 0.19065 3.03888 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.45138 3.23232 0.19056 3.03945 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.45165 3.23270 0.19048 3.03991 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.45173 3.23281 0.19046 3.04003 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.45135 3.23228 0.19056 3.03941 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 1.51415 1.80866 2.24504 0.67294 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //