# STOCKHOLM 1.0
#=GF ID snoTBR6
#=GF AC RF02788
#=GF DE Small nucleolar RNA TBR6
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 37.6
#=GF NC 36.9
#=GF TC 37.7
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 10908346
#=GF RT The genes for small nucleolar RNAs in Trypanosoma brucei are organized in
#=GF RT clusters and are transcribed as a polycistronic RNA.
#=GF RA Dunbar DA, Chen AA, Wormsley S, Baserga SJ
#=GF RL Nucleic Acids Res. 2000;28:2855-2861.
#=GF RN [2]
#=GF RM 10747997
#=GF RT Fibrillarin-associated box C/D small nucleolar RNAs in Trypanosoma brucei.
#=GF RT Sequence conservation and implications for 2'-O-ribose methylation of
#=GF RT rRNA.
#=GF RA Dunbar DA, Wormsley S, Lowe TM, Baserga SJ
#=GF RL J Biol Chem. 2000;275:14767-14776.
#=GF CC TBR6 was one of seventeen snoRNAs identified in Trypanosoma brucei.[2]
#=GF CC Together with TBR2, TBR12 and TBR4 it is a part of snoRNA gene cluster
#=GF CC that is tandemly repeated. These 4 snoRNA genes are transcribed as a
#=GF CC polycistronic RNA transcript.[1]
#=GF WK Small_nucleolar_RNA_TBR6
#=GF SQ 3

CM000208.1/3814121-3814202 CGC-------GUGAUGACA-UACAAAGU--UGUUUGCACAUUUUCCGACACACCGUGA-------GCGAGUUACAAUAUUACAAGAACACCAUCUGAAU
AHKC01021457.1/284-198     CGCCGUGACAGUGAUGACC--ACAAGCU---GUUUGCACAUUUGCCGACCCUGCGUGA-------GUGACCCACAGGAAUCUAAGAACACCAGCUGAUG
FR796429.1/92658-92566     CGC------UGUGAUGACUGGAUGAGUUAUUGUUUGCACAUUUACCGAGCCUUCGUGGCCCGUGAGCGACCGUAUAACUUCUAAGAACACCAGCUGAUU
#=GC SS_cons               (((......,<<<--<<<_.________.._>>>-->>>,,,,<<<<______>>->>.......))):::::::::::::::::::::::::::::::
#=GC RF                    CGC......uGUGAUgACu.uAcaAguU..UGUuUGCACAUUUuCCGAccCuuCGUGa.......GCGAccuacaaaauUcuAAGAACACCAgCUGAuu
//
