# STOCKHOLM 1.0
#=GF ID SorX
#=GF AC RF02784
#=GF DE Singlet oxygen resistance RNA X
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 46.6
#=GF NC 46.4
#=GF TC 46.6
#=GF SE Argasinska J
#=GF SS Predicted; 27420112;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0080183; response to photooxidative stress;
#=GF RN [1]
#=GF RM 27420112
#=GF RT Regulation of a polyamine transporter by the conserved 3' UTR-derived sRNA
#=GF RT SorX confers resistance to singlet oxygen and organic hydroperoxides in
#=GF RT Rhodobacter sphaeroides.
#=GF RA Peng T, Berghoff BA, Oh JI, Weber L, Schirmer J, Schwarz J, Glaeser J,
#=GF RA Klug G
#=GF RL RNA Biol. 2016;13:988-999.
#=GF RN [2]
#=GF RM 19906181
#=GF RT Photooxidative stress-induced and abundant small RNAs in Rhodobacter
#=GF RT sphaeroides.
#=GF RA Berghoff BA, Glaeser J, Sharma CM, Vogel J, Klug G
#=GF RL Mol Microbiol. 2009;74:1497-1512.
#=GF CC SorX (RSs2461)like SorY is a singlet oxygen induced sRNA that counteracts
#=GF CC oxidative stress by targeting mRNA for a transporter in Rhodobacter. It
#=GF CC also has an impact on resistance against organic hydroperoxides. It
#=GF CC targets SD sequence of potA mRNA via an aSD sequence. The aSD sequence and
#=GF CC some neighbouring nucleotides are identical to the one of SorY (targets
#=GF CC takP mRNA). 
#=GF WK Rhodobacter_sphaeroides
#=GF SQ 8

CP000143.2/2598225-2598299 UUCCCUCCCGUGUC-GGGGUUAG-AGACACGG--ACCCUCCCUGUUGGAUCUGGCCGGGCCUCGUGCCCGGCCUUUUUU
CP014595.1/981561-981633   UCCCGUUGCAUGUG-CGGGUUAU--CACAUGC--AC-CUCCCUGUUGGACCUGGCCGGGCUUUGUGCCCGGCCUUUUUU
CP000377.1/54706-54778     AUCCCGCGCAUAUC-CGGGUCAC--GAUAUGC--AUCCUCCCUGUCGGA-CUGGCCGGGCUUCGCGCCCGGCCUUUUUU
CP015124.1/2077082-2077010 AUCCCGCGCAUAUC-CGGGUCAU--GAUAUGC--AC-CUCCCUGUUGGACUGGGCCGGGCCUUGCGCCCGGCCUUUUUU
CP000362.1/41662-41590     AACCCGCGCAUGUC-CGGGUCAU--GACAUGC--AC-CUCCCUGUUGGACUUGGCCGGGCUUUAUGCCCGGUCUUUUUU
CP006773.1/3787862-3787790 AUCCCGCGCAUAUC-CGGGUCAC--GAUAUGC--AC-CUCCCUGUUGGACUUGGCCGGGCAUGACGCCCGGCCUUUUUU
CP012661.1/4600018-4600091 AGCCCUCCCGCGCC-GGGGUCAU--GGCGCGGCUUCCCUCCCUGUUGGA-CUGCCCGGGCUUCG-GCCCGGGCAUUUUU
CP000830.1/40364-40290     AACCCCAUGCUGUGACGGGGCAUGACACAGCA--AC-CUCCCUGUUGGA-CUUGCCGGGCCUCGUGCCCGGCAUUUUUU
#=GC SS_cons               :::::::<<<<<<<.________..>>>>>>>..::.:::::::::::::::<<<<<<<<_____>>>>>>>>::::::
#=GC RF                    AuCCCucgcguGuc.cGGGUCAu..gaCacgc..AC.CUCCCUGUUGGAccUGGCCGGGCuUcGuGCCCGGCCUUUUUU
//
