# STOCKHOLM 1.0
#=GF ID PutA_thermometer
#=GF AC RF02780
#=GF DE PutA 5' UTR thermometer
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 51.0
#=GF NC 41.4
#=GF TC 91.7
#=GF SE Argasinska J
#=GF SS Predicted; PMID:27298343;
#=GF TP Cis-reg; thermoregulator;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0002168; RNA_thermometer;
#=GF DR GO; 0009266; response to temperature stimulus;
#=GF DR GO; 0006417; regulation of translation;
#=GF RN [1]
#=GF RM 27298343
#=GF RT Temperature-responsive in vitro RNA structurome of Yersinia
#=GF RT pseudotuberculosis.
#=GF RA Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH,
#=GF RA Stadler PF, Dersch P, Narberhaus F
#=GF RL Proc Natl Acad Sci U S A. 2016;113:7237-7242.
#=GF CC Position upstream of pepN gene responsible for amino acid processing.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 4

CP000950.1/2603743-2603814 GAAAUAAAAUCAUAAUUCCCCUUAUCAAAGGAGACGAGCGACAUGGCGAGUACCACAAUGGGCGUAAAGCUU
CP002956.1/3562336-3562407 GAAAUAAAAUCAUAAUUCCCCUUAUCAAAGGAGACGAGCGACAUGGCGAAUACCACAAUGGGCGUAAAGCUU
CP002246.1/2049129-2049058 GAAAUAAAAUCAUAACUCCCCUUAAUUAAGGAGCCAGACAGCAUGGGUAGCACCACAAUGGGCGUGAAACUC
AALC02000028.1/23904-23975 GAAAUAAAAUGAUAACUCCCCUUAUAAAAGGAGCCUGGCAGCAUGGCUAGUACCACAAUGGGUGUGAAACUC
#=GC SS_cons               <<<-<<______>>->>>:::::::::::<<--<<--<<______>>-->>->>:::::<<<<_____>>>>
#=GC RF                    GAaAUAAAAUcAUAAuUCCCCUUAuuaAAGGAGaCgagCaaCAUGGcuAGuACCACAAUggGcGUaAAgCuc
//
