# STOCKHOLM 1.0
#=GF ID OppA_thermometer
#=GF AC RF02777
#=GF DE OppA 5' UTR thermometer
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 290.0
#=GF NC 51.0
#=GF TC 381.3
#=GF SE Argasinska J
#=GF SS Predicted; PMID:27298343;
#=GF TP Cis-reg; thermoregulator;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0002168; RNA_thermometer;
#=GF DR GO; 0009266; response to temperature stimulus;
#=GF DR GO; 0006417; regulation of translation;
#=GF RN [1]
#=GF RM 27298343
#=GF RT Temperature-responsive in vitro RNA structurome of Yersinia
#=GF RT pseudotuberculosis.
#=GF RA Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH,
#=GF RA Stadler PF, Dersch P, Narberhaus F
#=GF RL Proc Natl Acad Sci U S A. 2016;113:7237-7242.
#=GF CC Positioned upstream of gene for oligopeptide uptake.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 3

CP000950.1/2298904-2298601 AACUUUUUGAAAAAAGUUCGCUUAUAUUUUUAUGAAAUUUAGCUGUAGUGAUUAUUUUGGAAUAGUUAAUUUAUUUUGGGAUGGUUGAUGCAUUUUGGAAUAGUUGAUGCAUGUCGUUGAUAGCUAAUUGACCAUCGCCAUAGACAAAAUAUCACCACAUGUGAGGUUUACGUUACCGGGUUCGUUCCCCAGGUAACGCA
CP001048.1/2399343-2399646 AACUUUUUGAAAAAAGUUCGCUUAUAUUUUUAUGAAAUUUAGCUGUAGUGAUUAUUUUGGAAUAGUUAAUUUAUUUUGGGAUGGUUGAUGCAUUUUGGAAUAGUUGAUGCAUGUCGUUGAUAGCUAAUUGACCAUCGCCAUAGACAAAAUAUCACCACAUGUGAGGUUUACGUUACCGGGUUCGUUCCCCAGGUAACGCA
AE017042.1/2203163-2203466 AACUUUGUGAAAAAAGUUCGCUUAUAUUUUUAUGAAAUUUAGCUGUAGUGAUUAUUUUGGAAUAGUUAAUUUAUUUUGGGAUGGUUGAUGCAUUUUGGAAUAGUUGAUGCAUGUCGUUGAUAGCUAAUUGACCAUCGCCAUAGACAAAAUAUCACCACAUGUGAGGUUUACGUUACCGGGUUCGUUCCCCAGGUAACGCA
#=GC SS_cons               ::((((-(((-----(((-(-((((((((((((--------(((-((((((,,,,,,,,,,,,,,,,,,,,<<<<<<<--<<<<<-<<<<----<<<<----<<<<<<<_____>>>>>>>-->>>>----->>>>>>>>>--->>>>>>>,,<<<________>>>,,,,<<<<<<<<<_______>>>->>>>>><<<
#=GC RF                    AACuuuuuGaAAAAAGucCGCuuauauuuuuauGAAAUUUAGCcGcaguGaUUAUUUUGGAAUAGUUAAUUuauuuuGGGauGGcUGauGCAUUuugGAAUAgucgacGCAUGUCgucgacAGCcaaUUGACCauCgCCauAGACaaaauaUCaCCACAUGUGAGGuUUACGuuaCCGGGUUCGUUCCCCAGGuaaCGCa

CP000950.1/2298904-2298601 AAUUUAGAAUACCGUUUAAAGGUGAGUUUGCCUGUUCACUGGGCAAUACAUAAUAAAAUGGAGUACAUAUAAACAUGACCAACAUCACAAAGAAGAAUCUCAUU
CP001048.1/2399343-2399646 AAUUUAGAAUACCGUUUAAAGGUGAGUUUGCCUGUUCAUUGGGCAAUACAUAAUAAAAUGGAGUACAUAUAAACAUGACCAACAUCACAAAGAAGAAUCUCAUU
AE017042.1/2203163-2203466 AAUUUAGAAUACCGUUUAAAGGUGAGUUUGCCUGUUCACUGGGCAAUACAUAAUAAAAUGGAGUACAUAUAAACAUGACCAACAUCACAAAGAAGAAUCUCAUU
#=GC SS_cons               <<<<<-----<<<_______>>>>>>>>>>>,,,,)))))))))--------))))))--------))))))-)--)))-----)))-))))::::::::::::
#=GC RF                    aacucAGAAUaCCGUUUAAAGGugaguuuGCCUGUuCacuggGCAAUACAUAauaaaaUGGAGUACauauaaACAUgaCCAACAuCaCaaaGAAGAAUCUCAUU
//
