# STOCKHOLM 1.0
#=GF ID Ysr190
#=GF AC RF02764
#=GF DE Yersinia sRNA 190
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 66.0
#=GF NC 63.4
#=GF TC 66.2
#=GF SE Argasinska J
#=GF SS Predicted; PMID:27298343;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27298343
#=GF RT Temperature-responsive in vitro RNA structurome of Yersinia
#=GF RT pseudotuberculosis.
#=GF RA Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH,
#=GF RA Stadler PF, Dersch P, Narberhaus F
#=GF RL Proc Natl Acad Sci U S A. 2016;113:7237-7242.
#=GF RN [2]
#=GF RM 25816203
#=GF RT Transcriptomic profiling of Yersinia pseudotuberculosis reveals
#=GF RT reprogramming of the Crp regulon by temperature and uncovers Crp as a
#=GF RT master regulator of small RNAs.
#=GF RA Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M,
#=GF RA Dersch P
#=GF RL PLoS Genet. 2015;11:e1005087.
#=GF CC The sRNA was identified by [2] and is confirmed to have a stable secondary
#=GF CC structure by [1] using genome-wide structure probing at different
#=GF CC temperatures. The function is unknown.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 4

CP000950.1/501337-501236   GCGAAUUGCUACGAUAUCAUUAUAAUGCCCAACCUUAGUGCUGAUCGCCGUGCCAGUUUCGUCGUAAAAAGGUGACAAAUCGGUAGCAGCAGGUUAUUUUUU
ACCB01000011.1/91169-91270 GCUAAUUGCUACGAUAUCAUUAUAAUGCCCGACCUUAGUGCCGAUCGCAGUGUCAAUUUCGUCGUAAAAAGGUGACAAAUCGGUGACAUCAGGUUAUUUUUU
FR729477.2/2758034-2758135 GCUAAUUGCUACGAUAUCAUUAUAAUGCCCGACCUUAGUACCGAUCGCAGUGUCAAAUUCAUCGUAAAAAGGUGACAAAUCGGUGACAUCAGGUUAUUUUUU
AALE02000020.1/91393-91494 GCUAAUUGCUACGAUAUCAUUAUAAUGCUCGACCUUAGUGCCGAUCACAGUAUCAAAAUCGUCGUAAAAAGGUGACAAAUCGGUGACAUCAGGUUAUUUUUU
#=GC SS_cons               :::::::<<----<<<____>>>--->>::<<<<<---<<<<<<<<<<<_____________________>>>>>---->>>>>>----->>>>>:::::::
#=GC RF                    GCuAAUUGCUACGauaUCAUuauAAUGCcCgaCCuUAGcgCcGauCgCcGUguCAauuUCgUCGUAAAAAgGcGaCAAAuCgGcgaCAuCaGGucAUUUUUU
//
