# STOCKHOLM 1.0
#=GF ID ES239
#=GF AC RF02756
#=GF DE ES239 sRNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 62.0
#=GF NC 47.4
#=GF TC 147.0
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0006113; fermentation;
#=GF RN [1]
#=GF RM 26653712
#=GF RT Differential expression of small RNAs under chemical stress and fed-batch
#=GF RT fermentation in E. coli.
#=GF RA Rau MH, Bojanovic K, Nielsen AT, Long KS
#=GF RL BMC Genomics. 2015;16:1051.
#=GF CC Differentially expressed under several chemical stress and fermentation
#=GF CC conditions. 
#=GF WK Escherichia_coli_sRNA
#=GF SQ 5

U00096.2/4434589-4434711   CAGGGACAUCCUUUUAUCAUCGGGAAUACGAAAGAAAAGGGAGAAUAAACGUCUUACUUAUAGAACAGUGAAGAAUGCCACAAUUUUACGCUUUGAAAAUGAUGACACUAUCACAGUUGGCGC
CU928160.2/4522398-4522520 CAGGGACAUCCUUUUAUUAUCGGGAAUACGAAAGAAAAGGGAGAAUAAACGUCUUACUUAUAGAACAGUGAAGAAUGCCACAAUUUUACGCUUUGAAAAUGAUGACACUAUCACAGUUGGCGC
AEZI01000045.1/83214-83336 CAGGGACAUCCUUUUAUCAUCGGGAAUUCGAAAGAAAAGGGAGAAUAAACCUCUUACUUUUAGAACAGUGAAGAAUGCCACAAUUUAACGCUUUGAAAAUGAUGACACUAUCACAGUUGGCGC
AEVY01000053.1/52442-52564 CAGGGACAUCCUUUUAUUAUCGGGAAUACGAAAGAAAAGGGAGAAUAAACGUCUUACUAACAGAACAGCGAAGAAUGCCACAAUUUAACGCUUUGAAAAUGAUGACACUAUCACAGUUGGCGC
CP001383.1/4495125-4495003 CAGGGACAUCCUUUUAUCAUCGGGAAUACGAAAGAAAAGGGAGAAUAAACGCCUUACUUAUAGAACAGUGAAGAAUGCCACAAUUUUACGCUUUGAAAAUGAUGACACUAUCACAGUUGGCGC
#=GC SS_cons               ::<<<<<-<<<<<<<-<<-<<<______>>>-->>>>>>>>>-------->>>>>:::::<<<<<--<<<________>>>-->>>>><<<<-------<<<<<____>>>>>----->>>>:
#=GC RF                    CAggGacAuCCcuuuAucAuCGGGAAUaCGaAAgaaaagGGaGAAUAAACguCccACUuauagaaCAGuGAAGAAUGCCaCAAuucuaCGCcUUGAAAAuGaugACACcauCaCAGUUgGCGC
//
