# STOCKHOLM 1.0
#=GF ID ES036
#=GF AC RF02751
#=GF DE ES036 (CssrF) sRNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 37.6
#=GF NC 37.4
#=GF TC 37.6
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 26653712
#=GF RT Differential expression of small RNAs under chemical stress and fed-batch
#=GF RT fermentation in E. coli.
#=GF RA Rau MH, Bojanovic K, Nielsen AT, Long KS
#=GF RL BMC Genomics. 2015;16:1051.
#=GF RN [2]
#=GF RM 21483688
#=GF RT An integrated approach for finding overlooked genes in Shigella.
#=GF RA Peng J, Yang J, Jin Q
#=GF RL PLoS One. 2011;6:e18509.
#=GF CC Differentially expressed under several chemical stress conditions. Also
#=GF CC identified in Shigella as CssrF [2]. 
#=GF WK Escherichia_coli_sRNA
#=GF SQ 4

U00096.2/740211-740253       AAAUUUGUGCAAAUUCAAUAAAUUGCAGGAAAUACGUAGGCCU
AGTL01000317.1/47527-47485   AAAUUUGUACAAAUUCAAUAAAUUGCAGGAAAUACGUAGGUCU
AEMF01000001.1/944896-944854 AAAAUUGUGCAAAUUCAAUAUAUUGCAGGAGAUUAGUAGGCCU
AFGZ01000011.1/108373-108331 AAAUUUUUGCAAAUUCAAUAAAUUGCAGGAAAUACGUAGGCCU
#=GC SS_cons                 :::<<<-<<<<<__________>>>>>->>>::::::::::::
#=GC RF                      AAAuUUGUGCAAAUUCAAUAAAUUGCAGGAaAUACGUAGGCCU
//
