# STOCKHOLM 1.0
#=GF ID JA02
#=GF AC RF02730
#=GF DE Aggregatibacter sRNA JA02
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 49.0
#=GF NC 46.4
#=GF TC 106.2
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0010039; response to iron ion;
#=GF RN [1]
#=GF RM 22958383
#=GF RT Novel iron-regulated and Fur-regulated small regulatory RNAs in
#=GF RT Aggregatibacter actinomycetemcomitans.
#=GF RA Amarasinghe JJ, Connell TD, Scannapieco FA, Haase EM
#=GF RL Mol Oral Microbiol. 2012;27:327-349.
#=GF WK Aggregatibacter_iron-regulated_sRNA
#=GF SQ 4

FJ664181.1/95-210          CAAGUACUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAACCAAG-AAGAAUUUUUUGCGUGGUAAAAAUCGCAUUAUU-AAAAUUUGUGUAAAGGGACAAAUUUU
AEJN01000022.1/11402-11286 CAAGUACUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAACCAAG-AAGAAUUUUUUGCGUGGUAAAAAUCGCAUUAUUAAAAAUUUGUGUAAAGGGACAAAUUUU
AEJM01000010.1/53143-53258 CAAGUACUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAACCAAG-AAGAAUUUUUUGCGUGGUAAAAAUCGUAUUAUU-AAAAUUUGUGCAAAGGGAUAAAUUUU
CP001607.1/699770-699886   CAAGCAUUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAAUUAAGGAAGAAUUUUUCGAAGGGUGAAUAUUGCGUAAGU-AAAUUUUGUGUAACCACAUGAAUUUU
#=GC SS_cons               :::<<<--<<<<<<<<--<<<<--<<<<---<<_________>>--->>>>-->>>>.>>>>>>>>-->>><<<<<____>>>>>::::::.<<<<<<<<<________>>>>>>>>>
#=GC RF                    CAAgcacUaaauuuuuUACuuGAAuuauUGACaUAAAAUAACuGCUUauaaAcCaaG.aagaauuuUUugcgcGguaAAaauCgcaUuAuU.aaaauuuguGuAAagggacaaauuuu
//
