INFERNAL1/a [1.1.5 | Sep 2023] NAME sca_ncR26 ACC RF02721 DESC Small Cajal body specific RNA ncR26 STATES 208 NODES 52 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 19:03:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02721/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.785156 CKSUM 1765097328 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.00 NC 36.90 EFP7GF -4.9933 0.72636 ECMLC 0.56333 -6.76392 4.09603 1600000 544588 0.002204 ECMGC 0.41400 -15.38331 -1.48547 1600000 126150 0.003171 ECMLI 0.54968 -4.03734 5.54546 1600000 232715 0.005157 ECMGI 0.44659 -9.83029 1.80380 1600000 72198 0.005540 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 105 -6.888 -7.095 -0.055 -5.509 IL 1 1 2 1 4 1 25 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 25 85 105 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 4 2 3 5 3 0 19 83 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 24 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 24 83 104 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 7 5 3 8 3 0 19 82 102 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 23 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 23 82 103 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 10 8 3 11 3 0 18 81 101 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 22 81 101 -7.908 -0.021 -6.562 -1.461 -2.662 1.695 -2.048 D 13 11 3 14 3 0 17 80 100 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 21 80 100 -7.908 -0.021 -6.562 1.694 -2.259 -1.902 -1.791 D 16 14 3 17 3 0 16 79 99 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 20 79 99 -7.908 -0.021 -6.562 0.695 -1.348 0.482 -0.758 D 19 17 3 20 3 0 16 78 98 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 19 78 98 -7.908 -0.021 -6.562 1.694 -2.259 -1.902 -1.791 D 22 20 3 23 3 0 15 77 97 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 18 77 97 -7.908 -0.021 -6.562 1.694 -2.259 -1.902 -1.791 D 25 23 3 26 3 0 14 76 96 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 18 76 96 -7.908 -0.021 -6.562 -1.606 1.586 -2.425 -1.048 D 28 26 3 29 3 0 13 75 95 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 17 75 95 -7.908 -0.021 -6.562 -0.661 0.441 -1.434 0.714 D 31 29 3 32 3 0 13 74 94 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 17 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 16 74 94 -8.303 -0.019 -6.620 -0.340 -0.910 0.317 0.518 D 34 32 3 35 3 0 12 73 93 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 15 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 68 - U - - MR 36 35 3 38 3 1 15 73 93 -8.303 -0.019 -6.620 -1.383 -1.398 -2.111 1.588 D 37 35 3 38 3 0 10 71 91 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 67 - U - - MR 39 38 3 41 3 1 14 72 92 -8.303 -0.019 -6.620 -1.383 -1.398 -2.111 1.588 D 40 38 3 41 3 0 9 71 90 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 14 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 66 - U - - MR 42 41 3 44 5 1 13 71 91 -7.045 -0.040 -6.860 -7.072 -7.964 -1.383 -1.398 -2.111 1.588 D 43 41 3 44 5 0 8 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 12 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 65 G C - - MP 45 44 3 49 6 2 13 70 90 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -4.636 -3.044 -4.726 0.270 -5.084 -4.652 -0.475 -4.961 -4.258 3.612 -4.603 -0.739 -0.863 -4.398 -2.506 -3.604 ML 46 44 3 49 6 1 9 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 7 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 5 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 10 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 64 a u - - MP 51 50 6 55 4 2 11 68 88 -6.888 -7.095 -0.055 -5.509 -2.755 -2.317 -2.877 2.173 -2.901 -3.855 1.023 -3.065 -2.864 1.442 -3.401 -0.147 0.699 -3.122 -0.782 1.310 ML 52 50 6 55 4 1 8 68 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 5 68 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 4 67 87 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 10 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 9 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - U - - - ML 57 56 6 59 3 1 9 66 85 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 58 56 6 59 3 0 4 64 84 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 60 59 3 62 3 1 8 65 84 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 61 59 3 62 3 0 3 63 83 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 8 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - U - - - ML 63 62 3 65 3 1 8 64 83 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 64 62 3 65 3 0 2 62 82 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - U - - - ML 66 65 3 68 3 1 7 63 82 -8.303 -0.019 -6.620 -1.383 -1.398 -2.111 1.588 D 67 65 3 68 3 0 2 61 81 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 5 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - U - - MR 69 68 3 71 3 1 6 62 81 -8.303 -0.019 -6.620 -1.383 -1.398 -2.111 1.588 D 70 68 3 71 3 0 1 60 80 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 5 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - U - - MR 72 71 3 74 5 1 6 61 80 -7.045 -0.040 -6.860 -7.072 -7.964 -1.383 -1.398 -2.111 1.588 D 73 71 3 74 5 0 0 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 61 G U - - MP 75 74 3 79 6 2 7 60 79 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -3.547 -2.343 -3.707 1.176 -4.367 -5.091 0.014 -3.740 -3.389 1.452 -3.906 3.006 -0.346 -4.314 -1.927 -2.423 ML 76 74 3 79 6 1 2 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 2 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 60 a u - - MP 81 80 6 85 6 2 6 58 77 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -2.552 -2.249 1.084 2.137 -2.705 -3.617 1.064 -2.918 -2.705 1.457 -3.246 -0.199 0.772 -2.891 -0.666 -1.763 ML 82 80 6 85 6 1 2 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 2 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 3 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 3 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 59 u a - - MP 87 86 6 91 6 2 5 56 75 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -2.778 -2.716 -2.850 0.678 -2.372 -3.612 1.677 -2.879 -2.884 0.938 -3.378 -0.864 2.159 -3.037 -0.214 1.142 ML 88 86 6 91 6 1 2 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 58 G U - - MP 93 92 6 97 4 2 3 54 73 -6.888 -7.095 -0.055 -5.509 -3.547 -2.343 -3.707 1.176 -4.367 -5.091 0.014 -3.740 -3.389 1.452 -3.906 3.006 -0.346 -4.314 -1.927 -2.423 ML 94 92 6 97 4 1 1 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 53 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 2 55 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - C - - - ML 99 98 6 101 5 1 2 51 70 -7.045 -0.040 -6.860 -7.072 -7.964 -1.606 1.586 -2.425 -1.048 D 100 98 6 101 5 0 0 50 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 101 101 3 101 5 1 1 51 71 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 57 g c - - MP 102 101 3 106 6 2 4 50 69 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -3.013 -2.429 -3.133 0.937 -3.200 -3.895 0.763 -3.366 0.986 2.730 -3.588 -0.293 0.449 -3.254 -1.050 -2.165 ML 103 101 3 106 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 56 C G - - MP 108 107 6 112 6 2 3 48 67 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -4.440 -4.335 -4.148 -0.578 -2.890 -4.574 3.516 -3.689 -4.194 -0.321 -4.466 -2.281 0.635 -4.516 -0.594 -3.037 ML 109 107 6 112 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 55 C G - - MP 114 113 6 118 4 2 2 46 65 -6.809 -8.054 -0.084 -4.508 -4.440 -4.335 -4.148 -0.578 -2.890 -4.574 3.516 -3.689 -4.194 -0.321 -4.466 -2.281 0.635 -4.516 -0.594 -3.037 ML 115 113 6 118 4 1 1 46 65 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 118 118 5 118 4 1 1 46 65 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 54 - G - - MR 120 119 6 122 3 1 1 44 63 -8.303 -0.019 -6.620 -1.461 -2.662 1.695 -2.048 D 121 119 6 122 3 0 0 42 62 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 53 - A - - MR 123 122 3 125 3 1 1 43 62 -8.303 -0.019 -6.620 1.694 -2.259 -1.902 -1.791 D 124 122 3 125 3 0 0 41 61 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 52 - G - - MR 126 125 3 128 3 1 1 42 61 -8.303 -0.019 -6.620 -1.461 -2.662 1.695 -2.048 D 127 125 3 128 3 0 0 41 60 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 51 - U - - MR 129 128 3 131 5 1 1 41 60 -7.045 -0.040 -6.860 -7.072 -7.964 -1.383 -1.398 -2.111 1.588 D 130 128 3 131 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 50 G C - - MP 132 131 3 136 6 2 2 40 59 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -4.636 -3.044 -4.726 0.270 -5.084 -4.652 -0.475 -4.961 -4.258 3.612 -4.603 -0.739 -0.863 -4.398 -2.506 -3.604 ML 133 131 3 136 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 49 u a - - MP 138 137 6 142 6 2 2 38 57 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -3.085 -3.146 -3.078 0.311 1.393 -3.733 1.843 -2.942 -3.114 0.446 -3.560 -1.378 2.255 -3.301 -0.098 -2.098 ML 139 137 6 142 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 48 A U - - MP 144 143 6 148 6 2 2 36 55 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -3.701 -2.756 -3.726 3.270 -4.020 -5.075 0.274 -3.774 -3.622 1.176 -4.165 -0.247 -0.144 -4.277 -1.668 -2.566 ML 145 143 6 148 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 47 u a - - MP 150 149 6 154 4 2 2 34 53 -6.888 -7.095 -0.055 -5.509 -3.376 -3.354 -3.314 0.252 -2.406 -3.931 1.863 -3.076 -3.340 0.483 -3.758 -1.440 2.284 -3.553 1.766 -2.263 ML 151 149 6 154 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 34 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 33 53 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - A - - - ML 156 155 6 158 5 1 1 32 51 -7.045 -0.040 -6.860 -7.072 -7.964 1.694 -2.259 -1.902 -1.791 D 157 155 6 158 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 158 158 3 158 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 46 U A - - MP 159 158 3 163 4 2 2 31 50 -6.888 -7.095 -0.055 -5.509 -4.076 -3.897 -3.927 -0.201 -2.893 -4.501 1.432 -3.581 -3.933 0.071 -4.311 -1.800 3.271 -4.231 -0.572 -2.768 ML 160 158 3 163 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 3 163 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - G - - - ML 165 164 6 167 3 1 1 28 47 -8.303 -0.019 -6.620 -1.461 -2.662 1.695 -2.048 D 166 164 6 167 3 0 0 27 45 -5.620 -0.734 -1.403 IL 167 167 3 167 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 45 - G - - MR 168 167 3 170 5 1 1 27 46 -7.045 -0.040 -6.860 -7.072 -7.964 -1.461 -2.662 1.695 -2.048 D 169 167 3 170 5 0 0 26 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 33 44 A U - - MP 171 170 3 175 6 2 2 26 45 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -3.701 -2.756 -3.726 3.270 -4.020 -5.075 0.274 -3.774 -3.622 1.176 -4.165 -0.247 -0.144 -4.277 -1.668 -2.566 ML 172 170 3 175 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 34 43 C G - - MP 177 176 6 181 6 2 2 24 43 -9.085 -9.024 -0.021 -7.801 -8.080 -8.475 -4.440 -4.335 -4.148 -0.578 -2.890 -4.574 3.516 -3.689 -4.194 -0.321 -4.466 -2.281 0.635 -4.516 -0.594 -3.037 ML 178 176 6 181 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 35 42 a u - - MP 183 182 6 187 6 2 2 22 41 -9.085 -9.024 -0.173 -3.283 -8.080 -8.475 -2.755 -2.317 -2.877 2.173 -2.901 -3.855 1.023 -3.065 -2.864 1.442 -3.401 -0.147 0.699 -3.122 -0.782 1.310 ML 184 182 6 187 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 36 41 g u - - MP 189 188 6 193 4 2 2 20 39 -6.445 -6.652 -0.076 -5.066 -3.109 -2.135 -3.224 1.384 -3.516 -4.299 0.770 -3.326 -3.053 2.030 -3.555 2.205 0.406 -3.582 -1.165 -2.056 ML 190 188 6 193 4 1 1 20 39 -4.727 -4.910 -0.237 -3.639 -0.625 -1.664 1.353 -1.054 MR 191 188 6 193 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 192 188 6 193 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 193 193 5 193 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - A - - - ML 195 194 6 197 3 1 1 16 35 -7.908 -0.021 -6.562 1.694 -2.259 -1.902 -1.791 D 196 194 6 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - U - - - ML 198 197 3 200 3 1 1 15 33 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - U - - - ML 201 200 3 203 3 1 1 13 32 -7.908 -0.021 -6.562 -1.383 -1.398 -2.111 1.588 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - U - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.383 -1.398 -2.111 1.588 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sca_ncR26 ACC RF02721 DESC Small Cajal body specific RNA ncR26 LENG 68 MAXL 157 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 19:03:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02721/CM NSEQ 2 EFFN 1.792969 CKSUM 1765097328 STATS LOCAL MSV -8.3156 0.72636 STATS LOCAL VITERBI -9.7547 0.72636 STATS LOCAL FORWARD -3.0910 0.72636 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52005 1.65700 1.37784 1.08333 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.34885 2.35825 2.85379 0.28461 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.34885 2.35825 2.85379 0.28461 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.34885 2.35825 2.85379 0.28461 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.40357 3.23680 0.21049 2.81130 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.21141 2.95638 2.70868 2.63211 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.90400 2.32240 1.05140 1.91349 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.21141 2.95638 2.70868 2.63211 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.21141 2.95638 2.70868 2.63211 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.50473 0.28562 3.07268 2.11647 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.84627 1.08003 2.38186 0.89108 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.62308 2.01833 1.16565 1.02690 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.40337 2.94182 0.22187 2.88595 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.16250 1.91534 1.42668 1.20430 13 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.34885 2.35825 2.85379 0.28461 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.34885 2.35825 2.85379 0.28461 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.34885 2.35825 2.85379 0.28461 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.34885 2.35825 2.85379 0.28461 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.80020 2.60687 0.38764 2.49727 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.84170 1.87239 1.42025 1.75091 19 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.04615 1.49160 1.77934 0.74022 20 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.80108 2.60833 0.38701 2.49933 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.50473 0.28562 3.07268 2.11647 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.91128 2.09118 0.52509 1.98730 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.91540 0.32063 2.65274 1.89935 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.91539 0.32063 2.65273 1.89935 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.39969 2.93806 0.22292 2.88054 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.28489 0.91875 2.09940 0.97640 27 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.47841 2.44579 1.59990 2.38970 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.35118 1.38774 2.10402 0.62897 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.21141 2.95638 2.70868 2.63211 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.67312 1.68953 2.38748 0.42389 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.40357 3.23680 0.21049 2.81130 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.47860 2.44531 1.59987 2.38894 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.91486 0.32071 2.65250 1.89926 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.16251 1.91542 1.42666 1.20427 35 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.67120 2.14931 0.56938 2.04376 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.21141 2.95638 2.70868 2.63211 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.34885 2.35825 2.85379 0.28461 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.34885 2.35825 2.85379 0.28461 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.34885 2.35825 2.85379 0.28461 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33404 3.73767 1.34643 1.46634 0.26236 1.09861 0.40547 41 2.24968 1.28545 1.91733 0.75281 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.06439 3.46801 3.46801 1.46634 0.26236 0.16808 1.86617 42 2.04508 1.64280 1.72731 0.69429 42 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.17609 2.82211 0.27683 2.67585 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.62698 1.86270 2.26314 0.40283 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.40357 3.23680 0.21049 2.81130 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.48384 2.56087 1.52624 2.41916 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.11266 2.26774 0.80179 2.12655 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.62239 1.86239 2.26167 0.40363 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.74103 2.26502 1.22373 2.07611 49 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.11151 0.25848 2.77789 2.11139 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.34885 2.35825 2.85379 0.28461 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.40357 3.23680 0.21049 2.81130 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.21141 2.95638 2.70868 2.63211 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.40357 3.23680 0.21049 2.81130 54 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.17193 2.81711 0.27843 2.66938 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.17048 2.81536 0.27900 2.66711 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.49056 0.83445 1.90282 1.65291 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.71828 1.67320 2.41352 0.42027 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.17386 1.95081 1.31777 1.26962 59 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 1.98023 1.62001 1.17580 1.03425 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.72341 1.67323 2.41542 0.41949 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.34885 2.35825 2.85379 0.28461 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.34885 2.35825 2.85379 0.28461 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.04568 1.64280 1.72740 0.69410 64 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 3.11475 0.25809 2.77920 2.11201 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.34885 2.35825 2.85379 0.28461 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.34885 2.35825 2.85379 0.28461 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 2.34885 2.35825 2.85379 0.28461 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //