INFERNAL1/a [1.1.5 | Sep 2023] NAME AsxR ACC RF02703 DESC Anti stx2 sRNA STATES 168 NODES 50 CLEN 53 W 69 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 15:12:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02703/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 1731857621 NULL 0.000 0.000 0.000 0.000 GA 63.00 TC 63.00 NC 46.80 EFP7GF -4.9492 0.73108 ECMLC 0.51920 -9.01305 2.96014 1600000 601116 0.001996 ECMGC 0.37467 -16.57095 -1.33113 1600000 120732 0.003313 ECMLI 0.48834 -7.32073 4.46062 1600000 378257 0.003172 ECMGI 0.41045 -11.96159 1.41442 1600000 96924 0.004127 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 69 88 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 17 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 17 69 88 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 4 2 3 5 3 0 12 67 87 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 16 68 87 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 7 5 3 8 3 0 11 66 86 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 16 67 86 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 10 8 3 11 3 0 11 65 85 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 15 66 85 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 13 11 3 14 3 0 10 64 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 15 64 84 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 16 14 3 17 3 0 9 63 83 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 14 63 83 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 19 17 3 20 3 0 9 62 82 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 13 62 82 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 22 20 3 23 3 0 9 61 81 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 13 61 81 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 25 23 3 26 3 0 8 60 80 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 12 60 80 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 28 26 3 29 3 0 8 59 79 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 11 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 11 59 79 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 31 29 3 32 3 0 7 58 78 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 10 58 78 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 34 32 3 35 3 0 6 57 76 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 10 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 9 57 77 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 37 35 3 38 3 0 6 56 75 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 9 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 9 56 76 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 40 38 3 41 3 0 6 55 74 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 8 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 53 - U - - MR 42 41 3 44 3 1 8 55 75 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 43 41 3 44 3 0 4 53 73 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 52 - U - - MR 45 44 3 47 3 1 7 54 74 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 46 44 3 47 3 0 4 52 72 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 51 - U - - MR 48 47 3 50 3 1 6 53 72 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 49 47 3 50 3 0 3 51 71 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 50 - U - - MR 51 50 3 53 3 1 5 52 71 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 52 50 3 53 3 0 3 51 70 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - U - - MR 54 53 3 56 2 1 4 51 70 -8.389 -0.004 -1.535 -1.523 -2.271 1.632 D 55 53 3 56 2 0 3 50 70 -4.432 -0.068 IR 56 56 3 56 2 1 4 52 71 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 19 ] - - - - - - B 57 56 3 58 87 0 3 50 69 [ BEGL 20 ] - - - - - - S 58 57 1 59 4 0 0 22 41 -0.044 -6.848 -6.255 -6.895 [ MATP 21 ] 14 22 G C - - MP 59 58 1 63 6 2 2 22 41 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 60 58 1 63 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 21 A U - - MP 65 64 6 69 6 2 2 20 39 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 66 64 6 69 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 20 g c - - MP 71 70 6 75 4 2 2 18 37 -6.977 -7.184 -0.052 -5.598 -3.728 -2.545 -3.780 0.972 -4.418 -4.546 0.056 -4.077 -3.691 2.971 -4.130 1.681 -0.225 -3.883 -1.901 -2.653 ML 72 70 6 75 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - U - - - ML 77 76 6 79 3 1 1 15 33 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 78 76 6 79 3 0 0 15 33 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - A - - - ML 80 79 3 82 3 1 1 13 31 -7.991 -0.460 -1.895 1.730 -2.426 -2.052 -1.973 D 81 79 3 82 3 0 0 13 32 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - U - - - ML 83 82 3 85 2 1 1 1 1 * 0.000 -0.783 -0.914 -1.467 1.337 D 84 82 3 85 2 0 0 0 0 * 0.000 IL 85 85 3 85 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 86 85 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 87 57 1 88 3 0 0 41 60 -7.991 -0.020 -6.645 IL 88 88 2 88 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - A - - - ML 89 88 2 91 3 1 1 41 60 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 90 88 2 91 3 0 0 39 59 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - U - - - ML 92 91 3 94 3 1 1 39 59 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 93 91 3 94 3 0 0 38 57 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - G - - - ML 95 94 3 97 3 1 1 38 57 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 96 94 3 97 3 0 0 37 56 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - C - - - ML 98 97 3 100 3 1 1 37 56 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 99 97 3 100 3 0 0 36 55 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 101 100 3 103 3 1 1 36 55 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 102 100 3 103 3 0 0 35 54 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 104 103 3 106 3 1 1 35 54 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 105 103 3 106 3 0 0 34 53 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - U - - - ML 107 106 3 109 3 1 1 34 53 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 108 106 3 109 3 0 0 33 52 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - U - - - ML 110 109 3 112 5 1 1 33 52 -7.117 -0.038 -6.932 -7.144 -8.036 -1.535 -1.523 -2.271 1.632 D 111 109 3 112 5 0 0 32 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 112 112 3 112 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 31 48 G C - - MP 113 112 3 117 6 2 2 32 51 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 114 112 3 117 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 3 117 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 3 117 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 32 47 C G - - MP 119 118 6 123 6 2 2 30 49 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 120 118 6 123 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 33 46 C G - - MP 125 124 6 129 6 2 2 28 47 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 126 124 6 129 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 34 45 C G - - MP 131 130 6 135 6 2 2 26 45 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 132 130 6 135 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 44 G C - - MP 137 136 6 141 6 2 2 24 43 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 138 136 6 141 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 36 43 A U - - MP 143 142 6 147 4 2 2 22 41 -6.977 -7.184 -0.052 -5.598 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 144 142 6 147 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 146 142 6 147 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 147 147 5 147 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 148 148 6 148 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 37 - A - - - ML 149 148 6 151 3 1 1 19 37 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 150 148 6 151 3 0 0 18 37 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 38 - C - - - ML 152 151 3 154 3 1 1 18 36 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 153 151 3 154 3 0 0 17 36 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 39 - C - - - ML 155 154 3 157 3 1 1 16 35 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 156 154 3 157 3 0 0 16 34 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 40 - C - - - ML 158 157 3 160 3 1 1 15 33 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 159 157 3 160 3 0 0 15 33 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - A - - - ML 161 160 3 163 3 1 1 13 31 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 162 160 3 163 3 0 0 13 32 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - C - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 -1.806 1.641 -2.632 -1.207 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME AsxR ACC RF02703 DESC Anti stx2 sRNA LENG 53 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 15:12:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02703/CM NSEQ 2 EFFN 1.503906 CKSUM 1731857621 STATS LOCAL MSV -7.5519 0.73108 STATS LOCAL VITERBI -8.8023 0.73108 STATS LOCAL FORWARD -2.8838 0.73108 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31017 1.39428 1.61238 1.26301 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.31079 0.35147 2.86977 1.96288 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.22773 3.03072 0.26138 2.60427 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.25424 2.79246 2.56124 2.45321 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.20137 2.23766 2.69729 0.33512 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.20137 2.23766 2.69729 0.33512 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.25424 2.79246 2.56124 2.45321 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.20137 2.23766 2.69729 0.33512 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.20137 2.23766 2.69729 0.33512 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.25424 2.79246 2.56124 2.45321 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.25424 2.79246 2.56124 2.45321 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.25424 2.79246 2.56124 2.45321 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.25424 2.79246 2.56124 2.45321 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.31079 0.35147 2.86977 1.96288 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.30839 2.77073 0.25839 2.72314 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.57521 2.27861 1.48069 2.23023 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 1.85675 2.39750 0.43025 2.27763 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.20137 2.23766 2.69729 0.33512 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.25424 2.79246 2.56124 2.45321 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.33336 3.73767 1.34831 1.46634 0.26236 1.09861 0.40547 19 1.78575 1.91105 2.24560 0.54725 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06434 3.46865 3.46865 1.46634 0.26236 0.16837 1.86459 20 2.50296 0.71865 2.20973 1.13626 20 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.45638 1.72603 2.09295 0.48948 21 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.92147 0.30538 2.58962 2.00804 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.25424 2.79246 2.56124 2.45321 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.20137 2.23766 2.69729 0.33512 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.22773 3.03072 0.26138 2.60427 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31079 0.35147 2.86977 1.96288 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.25424 2.79246 2.56124 2.45321 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.25424 2.79246 2.56124 2.45321 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.20137 2.23766 2.69729 0.33512 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.20137 2.23766 2.69729 0.33512 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.30362 2.76637 0.25991 2.71665 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.76137 0.37768 2.47318 1.78958 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.76142 0.37767 2.47319 1.78959 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.76105 0.37774 2.47305 1.78954 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.30375 2.76648 0.25987 2.71683 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.57582 2.27735 1.48074 2.22809 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.25424 2.79246 2.56124 2.45321 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.31079 0.35147 2.86977 1.96288 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.31079 0.35147 2.86977 1.96288 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.31079 0.35147 2.86977 1.96288 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.25424 2.79246 2.56124 2.45321 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.31079 0.35147 2.86977 1.96288 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.45929 1.72611 2.09376 0.48889 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.93515 0.30336 2.59486 2.01073 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.06173 2.63780 0.32785 2.51609 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.06138 2.63742 0.32801 2.51556 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.06046 2.63642 0.32842 2.51418 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.92417 0.30498 2.59066 2.00858 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.20137 2.23766 2.69729 0.33512 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.20137 2.23766 2.69729 0.33512 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.20137 2.23766 2.69729 0.33512 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.20137 2.23766 2.69729 0.33512 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.20137 2.23766 2.69729 0.33512 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //