INFERNAL1/a [1.1.5 | Sep 2023] NAME AgvB ACC RF02702 DESC Anti GcvB sRNA STATES 200 NODES 55 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 09:55:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02702/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.790039 CKSUM 2311318378 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 56.60 NC 43.40 EFP7GF -9.8984 0.71925 ECMLC 0.68454 -7.81992 1.30703 1600000 620241 0.001935 ECMGC 0.46421 -14.50603 -2.65282 1600000 98111 0.004077 ECMLI 0.54702 -8.35557 2.49062 1600000 452782 0.002650 ECMGI 0.49254 -10.36734 0.24745 1600000 74584 0.005363 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 78 97 -6.890 -7.097 -0.337 -2.379 IL 1 1 2 1 4 2 22 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 21 78 98 -8.075 -0.023 -6.393 -1.044 1.365 -1.833 -0.604 D 4 2 3 5 3 0 19 77 96 -6.511 -0.349 -2.294 IL 5 5 3 5 3 1 21 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - U - - MR 6 5 3 8 3 1 20 77 97 -8.304 -0.019 -6.622 -1.387 -1.400 -2.115 1.589 D 7 5 3 8 3 0 17 75 95 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 20 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - U - - MR 9 8 3 11 3 1 19 76 95 -8.304 -0.019 -6.622 -1.387 -1.400 -2.115 1.589 D 10 8 3 11 3 0 16 74 94 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 19 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - U - - MR 12 11 3 14 3 1 18 75 94 -8.304 -0.019 -6.622 -1.387 -1.400 -2.115 1.589 D 13 11 3 14 3 0 16 73 93 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 18 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - U - - MR 15 14 3 17 3 1 17 74 93 -8.304 -0.019 -6.622 -1.387 -1.400 -2.115 1.589 D 16 14 3 17 3 0 15 72 92 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 58 - U - - MR 18 17 3 20 3 1 16 73 92 -8.304 -0.019 -6.622 -1.387 -1.400 -2.115 1.589 D 19 17 3 20 3 0 15 71 91 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 17 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 57 - U - - MR 21 20 3 23 2 1 15 72 91 -8.292 -0.005 -1.387 -1.400 -2.115 1.589 D 22 20 3 23 2 0 14 71 91 -4.432 -0.068 IR 23 23 3 23 2 1 16 73 92 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 24 23 3 94 25 0 14 71 90 [ BEGR 39 ] - - - - - - S 25 24 1 26 3 0 0 36 55 -7.910 -0.021 -6.564 IL 26 26 2 26 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - a - - - ML 27 26 2 29 3 1 1 36 55 -7.910 -0.021 -6.564 0.969 -1.348 0.092 -0.776 D 28 26 2 29 3 0 0 35 54 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - U - - - ML 30 29 3 32 5 1 1 35 53 -7.046 -0.040 -6.862 -7.074 -7.966 -1.387 -1.400 -2.115 1.589 D 31 29 3 32 5 0 0 33 52 -4.959 -0.803 -4.221 -2.596 -2.508 IL 32 32 3 32 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 37 56 u a - - MP 33 32 3 37 6 2 2 34 52 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.379 -3.350 -3.326 0.269 -2.430 -3.955 1.848 -3.094 -3.348 0.504 -3.773 -1.420 2.516 -3.560 1.355 -2.267 ML 34 32 3 37 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 38 55 G C - - MP 39 38 6 43 6 2 2 32 50 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.640 -3.045 -4.730 0.267 -5.089 -4.654 -0.479 -4.965 -4.260 3.613 -4.605 -0.741 -0.867 -4.401 -2.511 -3.608 ML 40 38 6 43 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 39 54 C G - - MP 45 44 6 49 6 2 2 30 48 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.444 -4.340 -4.151 -0.582 -2.893 -4.577 3.517 -3.692 -4.197 -0.326 -4.469 -2.286 0.632 -4.520 -0.597 -3.040 ML 46 44 6 49 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 40 53 C G - - MP 51 50 6 55 6 2 2 28 46 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.444 -4.340 -4.151 -0.582 -2.893 -4.577 3.517 -3.692 -4.197 -0.326 -4.469 -2.286 0.632 -4.520 -0.597 -3.040 ML 52 50 6 55 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 41 52 C G - - MP 57 56 6 61 6 2 2 26 44 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.444 -4.340 -4.151 -0.582 -2.893 -4.577 3.517 -3.692 -4.197 -0.326 -4.469 -2.286 0.632 -4.520 -0.597 -3.040 ML 58 56 6 61 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 42 51 G C - - MP 63 62 6 67 6 2 2 24 42 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.640 -3.045 -4.730 0.267 -5.089 -4.654 -0.479 -4.965 -4.260 3.613 -4.605 -0.741 -0.867 -4.401 -2.511 -3.608 ML 64 62 6 67 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 43 50 A U - - MP 69 68 6 73 6 2 2 22 40 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.705 -2.759 -3.729 3.273 -4.025 -5.079 0.269 -3.777 -3.625 1.172 -4.168 -0.249 -0.148 -4.281 -1.672 -2.569 ML 70 68 6 73 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 44 49 a u - - MP 75 74 6 79 4 2 2 20 38 -6.890 -7.097 -0.055 -5.511 -2.883 0.873 -3.010 2.439 -3.303 -4.020 0.626 -3.259 -2.975 1.735 -3.498 0.039 0.377 -3.257 -1.152 -1.994 ML 76 74 6 79 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 45 - C - - - ML 81 80 6 83 3 1 1 16 35 -7.910 -0.021 -6.564 -1.611 1.587 -2.430 -1.051 D 82 80 6 83 3 0 0 16 34 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 46 - C - - - ML 84 83 3 86 3 1 1 15 33 -7.910 -0.021 -6.564 -1.611 1.587 -2.430 -1.051 D 85 83 3 86 3 0 0 15 33 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 47 - c - - - ML 87 86 3 89 3 1 1 13 32 -7.910 -0.021 -6.564 -0.717 0.758 -1.508 0.432 D 88 86 3 89 3 0 0 13 32 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 48 - A - - - ML 90 89 3 92 2 1 1 1 1 * 0.000 1.694 -2.263 -1.906 -1.795 D 91 89 3 92 2 0 0 0 0 * 0.000 IL 92 92 3 92 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 93 92 3 -1 0 0 0 0 0 [ BEGL 9 ] - - - - - - S 94 24 1 95 1 0 2 48 67 0.000 [ BIF 10 ] - - - - - - B 95 94 1 96 158 0 2 48 67 [ BEGL 11 ] - - - - - - S 96 95 1 97 4 0 0 34 53 -0.177 -6.804 -3.354 -6.852 [ MATP 12 ] 2 21 G C - - MP 97 96 1 101 6 2 2 34 54 -8.991 -8.930 -0.023 -7.707 -7.987 -8.382 -4.160 -2.821 -4.223 0.572 -4.413 -4.452 0.084 -4.411 -3.922 3.460 -4.305 -0.507 -0.321 -4.080 -1.926 -3.110 ML 98 96 1 101 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 99 96 1 101 6 1 1 33 52 -7.771 -6.500 -0.719 -6.478 -1.612 -4.692 -0.402 0.899 -1.137 -0.114 D 100 96 1 101 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 101 101 5 101 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 102 102 6 102 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 3 20 A U - - MP 103 102 6 107 6 2 2 32 52 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.705 -2.759 -3.729 3.273 -4.025 -5.079 0.269 -3.777 -3.625 1.172 -4.168 -0.249 -0.148 -4.281 -1.672 -2.569 ML 104 102 6 107 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 105 102 6 107 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 106 102 6 107 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 107 107 5 107 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 108 108 6 108 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 4 19 u a - - MP 109 108 6 113 6 2 2 30 50 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.014 -3.069 -3.032 0.393 0.706 -3.718 1.838 -2.925 -3.063 0.527 -3.526 -1.289 2.478 -3.243 -0.104 -2.051 ML 110 108 6 113 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 111 108 6 113 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 112 108 6 113 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 113 113 5 113 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 114 114 6 114 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 5 18 A U - - MP 115 114 6 119 4 2 2 28 48 -6.890 -7.097 -0.055 -5.511 -3.705 -2.759 -3.729 3.273 -4.025 -5.079 0.269 -3.777 -3.625 1.172 -4.168 -0.249 -0.148 -4.281 -1.672 -2.569 ML 116 114 6 119 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 117 114 6 119 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 118 114 6 119 4 0 0 27 47 -4.568 -4.250 -2.265 -0.520 IL 119 119 5 119 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 120 120 6 120 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 6 - A - - - ML 121 120 6 123 3 1 1 26 45 -7.910 -0.021 -6.564 1.694 -2.263 -1.906 -1.795 D 122 120 6 123 3 0 0 25 44 -6.174 -1.687 -0.566 IL 123 123 3 123 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 7 - C - - - ML 124 123 3 126 3 1 1 25 44 -7.910 -0.273 -2.571 -1.611 1.587 -2.430 -1.051 D 125 123 3 126 3 0 0 24 43 -6.174 -1.687 -0.566 IL 126 126 3 126 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 8 - A - - - ML 127 126 3 129 3 1 1 24 42 -7.663 -0.025 -6.317 1.551 -1.777 -1.468 -1.266 D 128 126 3 129 3 0 0 22 41 -7.440 -2.953 -0.209 IL 129 129 3 129 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 9 - A - - - ML 130 129 3 132 3 1 1 22 41 -7.663 -0.025 -6.317 1.551 -1.777 -1.468 -1.266 D 131 129 3 132 3 0 0 21 40 -7.440 -2.953 -0.209 IL 132 132 3 132 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 10 - C - - - ML 133 132 3 135 3 1 1 21 40 -7.663 -0.025 -6.317 -1.044 1.365 -1.833 -0.604 D 134 132 3 135 3 0 0 20 39 -7.440 -0.487 -1.832 IL 135 135 3 135 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 11 - A - - - ML 136 135 3 138 3 1 1 20 39 -7.910 -0.021 -6.564 1.694 -2.263 -1.906 -1.795 D 137 135 3 138 3 0 0 19 38 -6.174 -1.687 -0.566 IL 138 138 3 138 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 12 - C - - - ML 139 138 3 141 3 1 1 19 37 -7.910 -0.021 -6.564 -1.611 1.587 -2.430 -1.051 D 140 138 3 141 3 0 0 18 37 -6.174 -1.687 -0.566 IL 141 141 3 141 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 13 - A - - - ML 142 141 3 144 3 1 1 18 36 -7.910 -0.021 -6.564 1.694 -2.263 -1.906 -1.795 D 143 141 3 144 3 0 0 17 36 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 14 - A - - - ML 145 144 3 147 3 1 1 16 35 -7.910 -0.021 -6.564 1.694 -2.263 -1.906 -1.795 D 146 144 3 147 3 0 0 16 34 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 15 - C - - - ML 148 147 3 150 3 1 1 15 33 -7.910 -0.021 -6.564 -1.611 1.587 -2.430 -1.051 D 149 147 3 150 3 0 0 15 33 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 16 - A - - - ML 151 150 3 153 3 1 1 13 32 -7.910 -0.021 -6.564 1.694 -2.263 -1.906 -1.795 D 152 150 3 153 3 0 0 13 32 -6.174 -1.687 -0.566 IL 153 153 3 153 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 17 - A - - - ML 154 153 3 156 2 1 1 1 1 * 0.000 1.694 -2.263 -1.906 -1.795 D 155 153 3 156 2 0 0 0 0 * 0.000 IL 156 156 3 156 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 157 156 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 158 95 1 159 5 0 0 27 45 -7.046 -0.040 -6.862 -7.074 -7.966 IL 159 159 2 159 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 34 A U - - MP 160 159 2 164 6 2 2 27 45 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.705 -2.759 -3.729 3.273 -4.025 -5.079 0.269 -3.777 -3.625 1.172 -4.168 -0.249 -0.148 -4.281 -1.672 -2.569 ML 161 159 2 164 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 2 164 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 2 164 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 164 164 5 164 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 33 G C - - MP 166 165 6 170 6 2 2 25 43 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -4.640 -3.045 -4.730 0.267 -5.089 -4.654 -0.479 -4.965 -4.260 3.613 -4.605 -0.741 -0.867 -4.401 -2.511 -3.608 ML 167 165 6 170 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 168 165 6 170 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 169 165 6 170 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 170 170 5 170 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 171 171 6 171 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 32 u g - - MP 172 171 6 176 6 2 2 23 41 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.982 -3.898 -3.709 -0.244 -2.501 -4.152 1.783 -3.264 -3.749 -0.032 -4.052 -1.903 0.949 -4.078 2.933 -2.625 ML 173 171 6 176 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 174 171 6 176 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 175 171 6 176 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 176 176 5 176 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 177 177 6 177 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 31 A U - - MP 178 177 6 182 6 2 2 21 39 -9.086 -9.025 -0.021 -7.801 -8.081 -8.476 -3.705 -2.759 -3.729 3.273 -4.025 -5.079 0.269 -3.777 -3.625 1.172 -4.168 -0.249 -0.148 -4.281 -1.672 -2.569 ML 179 177 6 182 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 180 177 6 182 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 181 177 6 182 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 182 182 5 182 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 183 183 6 183 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 30 U A - - MP 184 183 6 188 4 2 2 18 37 -6.890 -7.097 -0.055 -5.511 -4.080 -3.901 -3.930 -0.204 -2.896 -4.504 1.430 -3.584 -3.936 0.066 -4.315 -1.804 3.273 -4.235 -0.575 -2.771 ML 185 183 6 188 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 186 183 6 188 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 187 183 6 188 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 188 188 5 188 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 189 189 6 189 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - C - - - ML 190 189 6 192 3 1 1 15 33 -7.910 -0.021 -6.564 -1.611 1.587 -2.430 -1.051 D 191 189 6 192 3 0 0 15 33 -6.174 -1.687 -0.566 IL 192 192 3 192 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - U - - - ML 193 192 3 195 3 1 1 13 32 -7.910 -0.021 -6.564 -1.387 -1.400 -2.115 1.589 D 194 192 3 195 3 0 0 13 32 -6.174 -1.687 -0.566 IL 195 195 3 195 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - C - - - ML 196 195 3 198 2 1 1 1 1 * 0.000 -1.611 1.587 -2.430 -1.051 D 197 195 3 198 2 0 0 0 0 * 0.000 IL 198 198 3 198 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 199 198 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME AgvB ACC RF02702 DESC Anti GcvB sRNA LENG 62 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 09:55:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02702/CM NSEQ 3 EFFN 2.393555 CKSUM 2311318378 STATS LOCAL MSV -8.1624 0.71925 STATS LOCAL VITERBI -8.5554 0.71925 STATS LOCAL FORWARD -3.4883 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31721 1.29694 1.68920 1.29432 1.38629 1.38629 1.38629 1.38629 0.24699 3.89861 1.61654 1.46634 0.26236 0.00000 * 1 2.39176 0.32199 2.95484 2.02691 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.05060 3.70221 3.70221 1.46634 0.26236 2.46785 0.08858 2 2.35136 2.84652 0.24117 2.79674 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.05060 3.70221 3.70221 1.46634 0.26236 0.18577 1.77470 3 0.33176 2.80261 1.85367 2.73297 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 4 2.41567 1.06245 2.23719 0.78018 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 5 0.33221 2.80085 1.85335 2.73044 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 6 0.15077 3.26452 2.98613 2.97098 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 7 2.87694 0.19533 3.45316 2.41373 7 C - - _ 1.38629 1.38629 1.38629 1.38629 0.24699 3.89861 1.61654 1.46634 0.26236 1.09861 0.40547 8 0.23516 2.86136 2.62323 2.52826 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05060 3.70221 3.70221 1.46634 0.26236 2.46785 0.08858 9 0.23516 2.86136 2.62323 2.52826 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05060 3.70221 3.70221 1.46634 0.26236 2.46785 0.08858 10 2.39176 0.32199 2.95484 2.02691 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05060 3.70221 3.70221 1.46634 0.26236 0.18577 1.77470 11 0.15077 3.26452 2.98613 2.97098 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 12 2.87694 0.19533 3.45316 2.41373 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 13 0.15077 3.26452 2.98613 2.97098 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 14 0.15077 3.26452 2.98613 2.97098 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 15 2.87694 0.19533 3.45316 2.41373 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 16 0.15077 3.26452 2.98613 2.97098 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 17 0.15077 3.26452 2.98613 2.97098 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 18 2.91160 2.14463 2.59566 0.28249 18 U - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 19 0.63985 2.38598 1.31809 2.18050 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 20 2.82106 2.13250 2.55912 0.29498 20 U - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 21 2.80770 0.31192 2.64412 1.99109 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 22 0.33051 2.80753 1.85458 2.74006 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 23 2.60671 3.27196 0.16478 3.21360 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 24 2.96912 1.58869 2.76000 0.38395 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 25 0.33134 2.80424 1.85397 2.73533 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 26 2.99982 1.92397 2.75198 0.30060 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 27 2.87694 0.19533 3.45316 2.41373 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 28 2.63361 2.59356 3.15197 0.20991 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 29 2.87694 0.19533 3.45316 2.41373 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 30 0.34104 2.93709 1.76089 2.74798 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 31 2.96483 2.15132 2.61622 0.27573 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 32 2.13660 2.93914 0.27117 2.70989 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 33 3.42702 0.19478 3.10983 2.30370 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 34 2.97753 2.15287 2.62102 0.27417 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 35 0.66575 2.45982 1.29274 2.07034 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 36 2.63361 2.59356 3.15197 0.20991 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 37 2.50760 1.48466 2.27599 0.52888 37 U - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 38 2.60471 3.26956 0.16522 3.21026 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 39 3.22609 0.23371 3.00160 2.12872 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 40 3.22401 0.23393 3.00061 2.12836 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 41 3.22229 0.23412 2.99978 2.12806 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 42 2.60106 3.26519 0.16603 3.20419 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 43 0.33187 2.80216 1.85359 2.73233 43 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 44 0.57914 2.42496 1.40124 2.25525 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 45 2.87694 0.19533 3.45316 2.41373 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 46 2.87694 0.19533 3.45316 2.41373 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 47 2.02262 0.78391 2.58948 1.09060 47 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 48 0.15077 3.26452 2.98613 2.97098 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 49 2.47556 1.09920 2.22510 0.74509 49 u - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 50 2.95798 2.15048 2.61361 0.27657 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 51 3.40530 0.19666 3.10026 2.29960 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 52 2.40580 3.16710 0.20220 2.98083 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 53 2.40638 3.16789 0.20204 2.98179 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 54 2.40697 3.16870 0.20187 2.98276 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 55 3.41277 0.19601 3.10357 2.30102 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 56 0.88685 2.44105 0.92019 2.27755 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 57 2.63361 2.59356 3.15197 0.20991 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 58 2.63361 2.59356 3.15197 0.20991 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 59 2.63361 2.59356 3.15197 0.20991 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 60 2.63361 2.59356 3.15197 0.20991 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 61 2.63361 2.59356 3.15197 0.20991 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.04138 3.89861 3.89861 1.46634 0.26236 1.09861 0.40547 62 2.63361 2.59356 3.15197 0.20991 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.02091 3.87813 * 1.46634 0.26236 0.00000 * //