INFERNAL1/a [1.1.5 | Sep 2023] NAME Avashort_thermometer ACC RF02699 DESC Avashort 5' UTR thermometer STATES 191 NODES 56 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 08:26:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02699/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.777344 CKSUM 376449123 NULL 0.000 0.000 0.000 0.000 GA 88.00 TC 88.70 NC 41.90 EFP7GF -5.1325 0.72765 ECMLC 0.68842 -7.42166 1.45510 1600000 540936 0.002218 ECMGC 0.39622 -16.04596 -2.05645 1600000 102167 0.003915 ECMLI 0.54715 -8.28249 2.51597 1600000 441713 0.002717 ECMGI 0.41185 -11.84815 0.82772 1600000 74018 0.005404 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 95 -6.884 -7.091 -0.056 -5.505 IL 1 1 2 1 4 3 25 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 24 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 24 75 95 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 4 2 3 5 3 0 20 74 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 24 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 3 24 74 94 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 7 5 3 8 3 0 19 73 93 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 23 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 3 23 73 93 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 10 8 3 11 3 0 18 72 92 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 22 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 3 22 72 92 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 13 11 3 14 3 0 18 70 91 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 22 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 2 21 71 91 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 16 14 3 17 3 0 17 69 90 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 21 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 2 20 70 90 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 19 17 3 20 3 0 17 68 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 2 20 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 2 19 69 89 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 22 20 3 23 3 0 16 67 87 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 2 18 68 88 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 25 23 3 26 3 0 16 66 86 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 2 17 67 87 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 28 26 3 29 3 0 15 65 85 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 18 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 16 66 85 -8.300 -0.019 -6.617 -1.454 -2.654 1.693 -2.040 D 31 29 3 32 3 0 15 65 84 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 17 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 59 - A - - MR 33 32 3 35 2 1 15 65 84 -8.286 -0.005 1.692 -2.253 -1.897 -1.784 D 34 32 3 35 2 0 14 64 84 -4.432 -0.068 IR 35 35 3 35 2 1 16 66 85 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 36 35 3 37 96 0 14 64 83 [ BEGL 13 ] - - - - - - S 37 36 1 38 4 0 0 33 51 -0.046 -6.802 -6.209 -6.849 [ MATP 14 ] 11 29 C G - - MP 38 37 1 42 6 2 2 33 51 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 39 37 1 42 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 1 42 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 1 42 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 28 C G - - MP 44 43 6 48 6 2 2 31 49 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 45 43 6 48 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 27 U A - - MP 50 49 6 54 6 2 2 29 47 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 51 49 6 54 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 26 G C - - MP 56 55 6 60 4 2 2 27 45 -6.806 -8.051 -0.084 -4.505 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 57 55 6 60 4 1 1 26 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 26 44 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 60 60 5 60 4 1 1 26 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 25 - g - - MR 62 61 6 64 5 1 1 25 43 -7.042 -0.040 -6.857 -7.070 -7.961 -0.305 0.185 0.307 -0.291 D 63 61 6 64 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 64 64 3 64 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 24 G C - - MP 65 64 3 69 6 2 2 24 42 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 66 64 3 69 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 3 69 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 3 69 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 23 a u - - MP 71 70 6 75 6 2 2 22 40 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -2.911 1.407 -3.050 2.254 -3.358 -4.063 0.586 -3.279 -2.983 1.703 -3.499 0.072 0.331 -3.313 -1.198 -2.015 ML 72 70 6 75 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 22 A U - - MP 77 76 6 81 4 2 2 20 38 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 78 76 6 81 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - G - - - ML 83 82 6 85 3 1 1 16 35 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 84 82 6 85 3 0 0 16 34 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - C - - - ML 86 85 3 88 3 1 1 15 33 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 87 85 3 88 3 0 0 15 33 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - - - ML 89 88 3 91 3 1 1 13 32 -7.905 -0.021 -6.559 0.695 -1.345 0.481 -0.755 D 90 88 3 91 3 0 0 13 32 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - A - - - ML 92 91 3 94 2 1 1 1 1 * 0.000 1.692 -2.253 -1.897 -1.784 D 93 91 3 94 2 0 0 0 0 * 0.000 IL 94 94 3 94 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 95 94 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 96 36 1 97 3 0 4 44 64 -7.905 -0.432 -1.973 IL 97 97 2 97 3 1 6 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 98 97 2 100 3 1 5 44 64 -7.502 -0.028 -6.156 -0.621 -1.660 1.351 -1.049 D 99 97 2 100 3 0 3 43 63 -7.837 -0.354 -2.229 IL 100 100 3 100 3 1 5 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - A - - - ML 101 100 3 103 3 1 4 43 63 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 102 100 3 103 3 0 1 42 61 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 4 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - A - - - ML 104 103 3 106 3 1 3 42 61 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 105 103 3 106 3 0 1 41 60 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 3 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - A - - - ML 107 106 3 109 3 1 3 41 60 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 108 106 3 109 3 0 1 40 59 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 3 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - A - - - ML 110 109 3 112 2 1 2 40 59 -8.286 -0.005 1.692 -2.253 -1.897 -1.784 D 111 109 3 112 2 0 1 39 58 -8.445 -0.004 IL 112 112 3 112 2 1 2 41 60 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 33 ] - - - - - - B 113 112 3 114 143 0 1 39 58 [ BEGL 34 ] - - - - - - S 114 113 1 115 4 0 0 23 42 -0.046 -6.802 -6.209 -6.849 [ MATP 35 ] 35 43 C G - - MP 115 114 1 119 6 2 2 23 42 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 116 114 1 119 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 117 114 1 119 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 118 114 1 119 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 119 119 5 119 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 120 120 6 120 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 36 42 C G - - MP 121 120 6 125 4 2 2 21 40 -6.884 -7.091 -0.056 -5.505 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 122 120 6 125 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 123 120 6 125 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 124 120 6 125 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 125 125 5 125 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 126 126 6 126 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 127 126 6 129 3 1 1 18 36 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 128 126 6 129 3 0 0 17 36 -6.174 -1.687 -0.566 IL 129 129 3 129 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 130 129 3 132 3 1 1 16 35 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 131 129 3 132 3 0 0 16 34 -6.174 -1.687 -0.566 IL 132 132 3 132 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 133 132 3 135 3 1 1 15 33 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 134 132 3 135 3 0 0 15 33 -6.174 -1.687 -0.566 IL 135 135 3 135 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 136 135 3 138 3 1 1 13 32 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 137 135 3 138 3 0 0 13 32 -6.174 -1.687 -0.566 IL 138 138 3 138 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 139 138 3 141 2 1 1 1 1 * 0.000 1.692 -2.253 -1.897 -1.784 D 140 138 3 141 2 0 0 0 0 * 0.000 IL 141 141 3 141 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 142 141 3 -1 0 0 0 0 0 [ BEGR 43 ] - - - - - - S 143 113 1 144 3 0 0 29 48 -7.905 -0.021 -6.559 IL 144 144 2 144 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 145 144 2 147 5 1 1 29 48 -7.042 -0.040 -6.857 -7.070 -7.961 1.692 -2.253 -1.897 -1.784 D 146 144 2 147 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 147 147 3 147 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 45 58 G C - - MP 148 147 3 152 6 2 2 28 47 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 149 147 3 152 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 3 152 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 3 152 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 46 57 U A - - MP 154 153 6 158 6 2 2 26 45 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 155 153 6 158 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 47 56 C G - - MP 160 159 6 164 6 2 2 24 43 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 161 159 6 164 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 164 164 5 164 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 55 A U - - MP 166 165 6 170 4 2 2 22 41 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 167 165 6 170 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 168 165 6 170 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 169 165 6 170 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 170 170 5 170 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 171 171 6 171 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 172 171 6 174 3 1 1 19 37 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 173 171 6 174 3 0 0 18 37 -6.174 -1.687 -0.566 IL 174 174 3 174 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 175 174 3 177 3 1 1 18 36 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 176 174 3 177 3 0 0 17 36 -6.174 -1.687 -0.566 IL 177 177 3 177 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - a - - - ML 178 177 3 180 3 1 1 16 35 -7.905 -0.021 -6.559 0.695 -1.345 0.481 -0.755 D 179 177 3 180 3 0 0 16 34 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - a - - - ML 181 180 3 183 3 1 1 15 33 -7.905 -0.021 -6.559 0.611 0.236 -1.073 -0.287 D 182 180 3 183 3 0 0 15 33 -6.174 -1.687 -0.566 IL 183 183 3 183 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - U - - - ML 184 183 3 186 3 1 1 13 32 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 185 183 3 186 3 0 0 13 32 -6.174 -1.687 -0.566 IL 186 186 3 186 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 187 186 3 189 2 1 1 1 1 * 0.000 1.692 -2.253 -1.897 -1.784 D 188 186 3 189 2 0 0 0 0 * 0.000 IL 189 189 3 189 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 190 189 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Avashort_thermometer ACC RF02699 DESC Avashort 5' UTR thermometer LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 08:26:57 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02699/CM NSEQ 2 EFFN 1.589844 CKSUM 376449123 STATS LOCAL MSV -7.8408 0.72765 STATS LOCAL VITERBI -9.2216 0.72765 STATS LOCAL FORWARD -2.7408 0.72765 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.04531 1.63241 1.37965 1.60300 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.24029 2.84226 2.60604 2.50743 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.24029 2.84226 2.60604 2.50743 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.28134 3.09386 0.24448 2.66766 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.24029 2.84226 2.60604 2.50743 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.24588 2.27392 2.74471 0.31884 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.24588 2.27392 2.74471 0.31884 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.24029 2.84226 2.60604 2.50743 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.24029 2.84226 2.60604 2.50743 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.24029 2.84226 2.60604 2.50743 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.28134 3.09386 0.24448 2.66766 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81597 0.35801 2.53083 1.82327 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81265 0.35856 2.52950 1.82278 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57010 1.61593 2.26613 0.47634 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.33568 2.82203 0.24695 2.77116 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.32094 2.80803 0.25153 2.75063 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.80665 2.11985 1.22276 1.97197 16 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.54536 2.32548 1.51569 2.27326 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.28134 3.09386 0.24448 2.66766 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.36922 0.32989 2.93122 2.00907 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.91610 2.27487 1.07259 1.86438 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.24029 2.84226 2.60604 2.50743 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.50631 1.76606 2.14281 0.46187 22 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.19813 0.99071 1.92641 0.98885 23 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.98731 0.28900 2.65014 2.04080 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.56776 1.27613 1.19790 1.55806 25 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.98628 0.28914 2.64974 2.04060 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.54361 2.44062 1.45253 2.32004 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.09303 2.69067 0.31258 2.56013 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.09046 2.68778 0.31370 2.55624 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.33367 3.73767 1.34744 1.46634 0.26236 1.09861 0.40547 30 1.75130 2.45592 0.49438 2.03472 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.06436 3.46836 3.46836 1.46634 0.26236 0.16824 1.86532 31 0.24029 2.84226 2.60604 2.50743 31 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.24029 2.84226 2.60604 2.50743 32 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.24029 2.84226 2.60604 2.50743 33 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.24029 2.84226 2.60604 2.50743 34 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81597 0.35801 2.53083 1.82327 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81265 0.35856 2.52950 1.82278 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.24588 2.27392 2.74471 0.31884 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.24588 2.27392 2.74471 0.31884 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.24029 2.84226 2.60604 2.50743 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.28134 3.09386 0.24448 2.66766 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.24029 2.84226 2.60604 2.50743 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.09303 2.69067 0.31258 2.56013 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.09046 2.68778 0.31370 2.55624 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.24029 2.84226 2.60604 2.50743 44 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.33736 2.82363 0.24643 2.77350 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.57095 1.61592 2.26643 0.47619 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.81069 0.35889 2.52872 1.82248 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.54436 2.32766 1.51568 2.27688 48 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.24029 2.84226 2.60604 2.50743 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.24029 2.84226 2.60604 2.50743 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.91610 2.27487 1.07259 1.86438 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.97470 1.24114 2.09611 1.55730 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.24588 2.27392 2.74471 0.31884 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.24029 2.84226 2.60604 2.50743 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.50933 1.76619 2.14370 0.46129 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.09673 2.69484 0.31098 2.56575 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.54282 2.44275 1.45242 2.32310 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.99505 0.28794 2.65314 2.04230 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.24029 2.84226 2.60604 2.50743 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //