INFERNAL1/a [1.1.5 | Sep 2023] NAME LDH1_5p_UTR ACC RF02697 DESC LDH1 5'UTR STATES 320 NODES 90 CLEN 102 W 120 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 04:05:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02697/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 0.902344 CKSUM 4124771093 NULL 0.000 0.000 0.000 0.000 GA 113.00 TC 129.40 NC 37.30 EFP7GF -5.4094 0.71854 ECMLC 0.57849 -9.16280 1.05211 1600000 442116 0.002714 ECMGC 0.39402 -14.26929 -3.93661 1600000 23454 0.017055 ECMLI 0.51525 -6.91296 3.59404 1600000 269347 0.004455 ECMGI 0.43204 -8.25803 1.18151 1600000 23618 0.016936 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 120 141 -6.450 -6.657 -0.076 -5.071 IL 1 1 2 1 4 19 54 124 145 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 19 54 123 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 18 53 120 141 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 4 2 3 5 3 14 50 119 140 -6.174 -1.687 -0.566 IL 5 5 3 5 3 18 53 122 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 17 52 119 140 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 7 5 3 8 3 14 49 118 139 -6.174 -1.687 -0.566 IL 8 8 3 8 3 17 52 121 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 17 51 118 139 -7.509 -0.028 -6.163 0.193 -1.168 0.793 -0.560 D 10 8 3 11 3 13 48 117 138 -6.174 -1.687 -0.566 IL 11 11 3 11 3 16 51 120 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 16 50 117 138 -7.934 -0.025 -6.251 -0.425 0.674 -1.174 0.282 D 13 11 3 14 3 13 48 116 137 -5.620 -0.734 -1.403 IL 14 14 3 14 3 15 50 118 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 102 - C - - MR 15 14 3 17 3 15 49 116 137 -7.934 -0.025 -6.251 -0.730 1.178 -1.495 -0.359 D 16 14 3 17 3 12 46 114 135 -6.390 -1.568 -0.620 IR 17 17 3 17 3 15 49 117 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 101 - A - - MR 18 17 3 20 3 14 48 115 136 -7.934 -0.025 -6.251 1.431 -1.490 -1.208 -0.959 D 19 17 3 20 3 11 46 113 134 -6.390 -1.568 -0.620 IR 20 20 3 20 3 14 48 116 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 100 - G - - MR 21 20 3 23 3 13 47 114 135 -7.934 -0.025 -6.251 -0.635 -1.677 1.359 -1.065 D 22 20 3 23 3 11 45 112 133 -6.390 -1.568 -0.620 IR 23 23 3 23 3 13 47 115 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 99 - A - - MR 24 23 3 26 3 12 46 113 134 -7.934 -0.025 -6.251 1.431 -1.490 -1.208 -0.959 D 25 23 3 26 3 10 45 112 133 -6.390 -1.568 -0.620 IR 26 26 3 26 3 12 47 114 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 98 - A - - MR 27 26 3 29 2 11 45 112 133 -7.790 -0.007 1.431 -1.490 -1.208 -0.959 D 28 26 3 29 2 10 44 111 132 -4.432 -0.068 IR 29 29 3 29 2 11 46 113 134 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 30 29 3 31 108 10 44 111 132 [ BEGL 11 ] - - - - - - S 31 30 1 32 4 0 0 40 59 -0.053 -6.604 -6.011 -6.651 [ MATP 12 ] 5 29 u a - - MP 32 31 1 36 6 2 2 40 59 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.421 -3.186 -3.333 0.451 -2.463 -3.959 1.840 -3.094 -3.350 0.883 -3.755 -1.097 2.747 -3.589 -0.159 -2.236 ML 33 31 1 36 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 1 36 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 1 36 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 6 28 C G - - MP 38 37 6 42 6 2 2 38 57 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.716 -3.520 -3.534 0.152 -2.472 -4.049 3.168 -3.189 -3.567 0.572 -3.905 -1.455 1.109 -3.831 -0.170 -2.440 ML 39 37 6 42 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 7 27 G C - - MP 44 43 6 48 6 2 2 36 55 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 45 43 6 48 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 35 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 26 a u - - MP 50 49 6 54 4 2 2 34 53 -6.450 -6.657 -0.076 -5.071 -3.190 -2.393 -3.239 2.687 -3.271 -4.307 1.002 -3.303 -3.164 1.757 -3.678 0.012 0.572 -3.597 -0.948 -2.117 ML 51 49 6 54 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 53 49 6 54 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 54 54 5 54 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 55 55 6 55 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 9 - C - - - ML 56 55 6 58 3 1 1 31 50 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 57 55 6 58 3 0 0 30 49 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 10 - C - - - ML 59 58 3 61 5 1 1 30 49 -6.704 -0.051 -6.520 -6.732 -7.624 -0.730 1.178 -1.495 -0.359 D 60 58 3 61 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 61 61 3 61 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 25 a u - - MP 62 61 3 66 6 2 2 29 48 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.190 -2.393 -3.239 2.687 -3.271 -4.307 1.002 -3.303 -3.164 1.757 -3.678 0.012 0.572 -3.597 -0.948 -2.117 ML 63 61 3 66 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 3 66 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 3 66 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 24 g u - - MP 68 67 6 72 6 2 2 27 46 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.113 -2.137 -3.229 1.383 -3.525 -4.307 0.762 -3.330 -3.056 2.025 -3.558 2.217 0.399 -3.589 -1.173 -2.059 ML 69 67 6 72 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 23 a u - - MP 74 73 6 78 6 2 2 25 44 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.190 -2.393 -3.239 2.687 -3.271 -4.307 1.002 -3.303 -3.164 1.757 -3.678 0.012 0.572 -3.597 -0.948 -2.117 ML 75 73 6 78 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 22 u a - - MP 80 79 6 84 6 2 2 23 42 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -2.486 -2.426 -2.596 0.906 -2.244 -3.383 1.729 -2.703 -0.784 1.232 -3.145 -0.618 2.247 -2.753 -0.125 -1.671 ML 81 79 6 84 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 21 u g - - MP 86 85 6 90 4 2 2 21 40 -6.450 -6.657 -0.076 -5.071 -3.288 -3.155 -3.165 0.427 -2.212 -3.727 2.047 -2.891 -3.200 0.788 -3.576 -1.173 1.335 -3.438 2.190 -2.113 ML 87 85 6 90 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 90 90 5 90 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - U - - - ML 92 91 6 94 3 1 1 18 37 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 93 91 6 94 3 0 0 17 36 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - U - - - ML 95 94 3 97 3 1 1 17 35 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 96 94 3 97 3 0 0 16 35 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - U - - - ML 98 97 3 100 3 1 1 15 34 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 99 97 3 100 3 0 0 15 33 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - U - - - ML 101 100 3 103 3 1 1 13 32 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 102 100 3 103 3 0 0 13 32 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - U - - - ML 104 103 3 106 2 1 1 1 1 * 0.000 -0.703 -0.852 -1.379 1.291 D 105 103 3 106 2 0 0 0 0 * 0.000 IL 106 106 3 106 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 107 106 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 108 30 1 109 3 1 26 85 106 -7.509 -0.028 -6.163 IL 109 109 2 109 3 1 26 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 110 109 2 112 3 2 26 85 106 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 111 109 2 112 3 0 21 84 104 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 25 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 113 112 3 115 3 1 25 84 105 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 114 112 3 115 3 0 20 83 103 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 24 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 116 115 3 118 3 1 24 83 104 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 117 115 3 118 3 0 19 82 102 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 24 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 119 118 3 121 3 1 24 82 102 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 120 118 3 121 3 0 18 80 101 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 23 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - C - - - ML 122 121 3 124 3 1 23 81 101 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 123 121 3 124 3 0 18 79 100 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 22 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 125 124 3 127 3 1 22 80 100 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 126 124 3 127 3 0 17 78 99 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 22 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 128 127 3 130 3 1 22 79 99 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 129 127 3 130 3 0 16 77 98 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 131 130 3 133 3 1 21 78 98 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 132 130 3 133 3 0 15 76 97 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - - - ML 134 133 3 136 5 1 21 77 97 -6.704 -0.051 -6.520 -6.732 -7.624 -0.730 1.178 -1.495 -0.359 D 135 133 3 136 5 0 15 75 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 136 136 3 136 5 1 19 77 97 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 39 97 G C - - MP 137 136 3 141 6 2 21 76 96 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 138 136 3 141 6 1 16 74 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 15 74 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 12 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 18 75 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 18 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 96 C G - - MP 143 142 6 147 6 2 19 74 94 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.716 -3.520 -3.534 0.152 -2.472 -4.049 3.168 -3.189 -3.567 0.572 -3.905 -1.455 1.109 -3.831 -0.170 -2.440 ML 144 142 6 147 6 1 16 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 14 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 12 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 17 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 17 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 95 G C - - MP 149 148 6 153 4 2 17 72 92 -6.450 -6.657 -0.076 -5.071 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 150 148 6 153 4 1 15 72 92 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 13 71 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 11 70 91 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 16 73 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 16 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 155 154 6 157 3 1 16 69 90 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 156 154 6 157 3 0 11 68 88 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 15 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 158 157 3 160 3 1 15 68 88 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 159 157 3 160 3 0 10 67 87 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 14 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 161 160 3 163 3 1 14 67 87 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 162 160 3 163 3 0 9 66 86 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 14 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - u - - - ML 164 163 3 166 3 1 14 66 86 -7.509 -0.028 -6.163 -0.363 0.274 -1.093 0.627 D 165 163 3 166 3 0 9 65 85 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 13 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 167 166 3 169 3 1 13 65 85 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 168 166 3 169 3 0 8 64 84 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 170 169 3 172 3 1 12 64 84 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 171 169 3 172 3 0 8 63 83 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - U - - - ML 173 172 3 175 3 1 12 63 83 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 174 172 3 175 3 0 7 62 82 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 176 175 3 178 3 1 11 62 82 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 177 175 3 178 3 0 7 61 81 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 179 178 3 181 3 1 10 61 81 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 180 178 3 181 3 0 6 59 79 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 10 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - A - - - ML 182 181 3 184 3 1 9 60 80 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 183 181 3 184 3 0 6 58 78 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 185 184 3 187 3 1 8 59 79 -7.934 -0.025 -6.251 1.431 -1.490 -1.208 -0.959 D 186 184 3 187 3 0 5 58 77 -5.620 -0.734 -1.403 IL 187 187 3 187 3 1 8 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 94 - A - - MR 188 187 3 190 3 1 7 58 78 -7.934 -0.025 -6.251 1.431 -1.490 -1.208 -0.959 D 189 187 3 190 3 0 4 56 76 -6.390 -1.568 -0.620 IR 190 190 3 190 3 1 7 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 93 - U - - MR 191 190 3 193 3 1 6 57 77 -7.934 -0.025 -6.251 -0.703 -0.852 -1.379 1.291 D 192 190 3 193 3 0 4 55 75 -6.390 -1.568 -0.620 IR 193 193 3 193 3 1 6 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 92 - G - - MR 194 193 3 196 3 1 5 56 76 -7.934 -0.025 -6.251 -0.635 -1.677 1.359 -1.065 D 195 193 3 196 3 0 3 54 74 -6.390 -1.568 -0.620 IR 196 196 3 196 3 1 5 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 91 - U - - MR 197 196 3 199 3 1 4 55 75 -7.934 -0.025 -6.251 -0.703 -0.852 -1.379 1.291 D 198 196 3 199 3 0 3 53 73 -6.390 -1.568 -0.620 IR 199 199 3 199 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 57 ] - 90 - G - - MR 200 199 3 202 2 1 4 54 73 -7.790 -0.007 -0.635 -1.677 1.359 -1.065 D 201 199 3 202 2 0 3 53 73 -4.432 -0.068 IR 202 202 3 202 2 1 4 55 74 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 58 ] - - - - - - B 203 202 3 204 254 0 3 53 72 [ BEGL 59 ] - - - - - - S 204 203 1 205 4 0 0 30 49 -0.053 -6.604 -6.011 -6.651 [ MATP 60 ] 53 68 u a - - MP 205 204 1 209 6 2 2 30 49 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.421 -3.186 -3.333 0.451 -2.463 -3.959 1.840 -3.094 -3.350 0.883 -3.755 -1.097 2.747 -3.589 -0.159 -2.236 ML 206 204 1 209 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 207 204 1 209 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 208 204 1 209 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 209 209 5 209 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 210 210 6 210 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 54 67 c g - - MP 211 210 6 215 6 2 2 28 47 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -2.924 -2.960 -2.897 0.487 1.303 -3.528 2.364 -2.753 -2.943 0.692 -3.373 -1.184 1.391 -3.125 0.098 -1.922 ML 212 210 6 215 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 213 210 6 215 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 214 210 6 215 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 215 215 5 215 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 216 216 6 216 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 55 66 c g - - MP 217 216 6 221 6 2 2 26 45 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.034 -3.032 -2.967 0.431 1.870 -3.567 2.067 -2.775 -3.012 0.653 -3.419 -1.207 1.349 -3.224 0.103 -1.979 ML 218 216 6 221 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 219 216 6 221 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 220 216 6 221 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 221 221 5 221 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 222 222 6 222 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 56 65 G C - - MP 223 222 6 227 6 2 2 24 43 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 224 222 6 227 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 225 222 6 227 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 226 222 6 227 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 227 227 5 227 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 228 228 6 228 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 57 64 C G - - MP 229 228 6 233 4 2 2 22 41 -6.450 -6.657 -0.076 -5.071 -3.716 -3.520 -3.534 0.152 -2.472 -4.049 3.168 -3.189 -3.567 0.572 -3.905 -1.455 1.109 -3.831 -0.170 -2.440 ML 230 228 6 233 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 231 228 6 233 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 232 228 6 233 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 233 233 5 233 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 234 234 6 234 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 58 - C - - - ML 235 234 6 237 3 1 1 19 38 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 236 234 6 237 3 0 0 18 37 -6.174 -1.687 -0.566 IL 237 237 3 237 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 59 - U - - - ML 238 237 3 240 3 1 1 18 37 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 239 237 3 240 3 0 0 17 36 -6.174 -1.687 -0.566 IL 240 240 3 240 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 60 - U - - - ML 241 240 3 243 3 1 1 17 35 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 242 240 3 243 3 0 0 16 35 -6.174 -1.687 -0.566 IL 243 243 3 243 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 61 - G - - - ML 244 243 3 246 3 1 1 15 34 -7.509 -0.028 -6.163 -0.635 -1.677 1.359 -1.065 D 245 243 3 246 3 0 0 15 33 -6.174 -1.687 -0.566 IL 246 246 3 246 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 62 - U - - - ML 247 246 3 249 3 1 1 13 32 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 248 246 3 249 3 0 0 13 32 -6.174 -1.687 -0.566 IL 249 249 3 249 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 63 - A - - - ML 250 249 3 252 2 1 1 1 1 * 0.000 1.431 -1.490 -1.208 -0.959 D 251 249 3 252 2 0 0 0 0 * 0.000 IL 252 252 3 252 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 253 252 3 -1 0 0 0 0 0 [ BEGR 72 ] - - - - - - S 254 203 1 255 3 0 0 36 55 -7.509 -0.028 -6.163 IL 255 255 2 255 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 69 - C - - - ML 256 255 2 258 3 1 1 36 55 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 257 255 2 258 3 0 0 34 54 -6.174 -1.687 -0.566 IL 258 258 3 258 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 70 - U - - - ML 259 258 3 261 3 1 1 35 54 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 260 258 3 261 3 0 0 33 53 -6.174 -1.687 -0.566 IL 261 261 3 261 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 71 - A - - - ML 262 261 3 264 3 1 1 34 53 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 263 261 3 264 3 0 0 32 51 -6.174 -1.687 -0.566 IL 264 264 3 264 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 72 - A - - - ML 265 264 3 267 3 1 1 32 51 -7.509 -0.028 -6.163 1.431 -1.490 -1.208 -0.959 D 266 264 3 267 3 0 0 31 50 -6.174 -1.687 -0.566 IL 267 267 3 267 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 73 - C - - - ML 268 267 3 270 3 1 1 31 50 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 269 267 3 270 3 0 0 30 49 -6.174 -1.687 -0.566 IL 270 270 3 270 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 74 - C - - - ML 271 270 3 273 3 1 1 30 49 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 272 270 3 273 3 0 0 29 48 -6.174 -1.687 -0.566 IL 273 273 3 273 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 75 - G - - - ML 274 273 3 276 5 1 1 29 48 -6.704 -0.051 -6.520 -6.732 -7.624 -0.635 -1.677 1.359 -1.065 D 275 273 3 276 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 276 276 3 276 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 80 ] 76 89 G C - - MP 277 276 3 281 6 2 2 28 47 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 278 276 3 281 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 279 276 3 281 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 280 276 3 281 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 281 281 5 281 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 282 282 6 282 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 81 ] 77 88 u a - - MP 283 282 6 287 6 2 2 26 45 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.421 -3.186 -3.333 0.451 -2.463 -3.959 1.840 -3.094 -3.350 0.883 -3.755 -1.097 2.747 -3.589 -0.159 -2.236 ML 284 282 6 287 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 285 282 6 287 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 286 282 6 287 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 287 287 5 287 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 288 288 6 288 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 82 ] 78 87 G C - - MP 289 288 6 293 6 2 2 24 43 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.874 -2.690 -3.931 0.745 -4.012 -4.319 0.426 -4.081 -3.703 3.331 -4.110 -0.375 0.008 -3.885 -1.574 -2.821 ML 290 288 6 293 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 291 288 6 293 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 292 288 6 293 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 293 293 5 293 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 294 294 6 294 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 83 ] 79 86 C G - - MP 295 294 6 299 6 2 2 22 41 -8.937 -8.877 -0.024 -7.653 -7.933 -8.328 -3.716 -3.520 -3.534 0.152 -2.472 -4.049 3.168 -3.189 -3.567 0.572 -3.905 -1.455 1.109 -3.831 -0.170 -2.440 ML 296 294 6 299 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 297 294 6 299 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 298 294 6 299 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 299 299 5 299 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 300 300 6 300 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 84 ] 80 85 a u - - MP 301 300 6 305 4 2 2 20 39 -6.450 -6.657 -0.076 -5.071 -3.190 -2.393 -3.239 2.687 -3.271 -4.307 1.002 -3.303 -3.164 1.757 -3.678 0.012 0.572 -3.597 -0.948 -2.117 ML 302 300 6 305 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 303 300 6 305 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 304 300 6 305 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 305 305 5 305 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 306 306 6 306 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 85 ] 81 - C - - - ML 307 306 6 309 3 1 1 17 35 -7.509 -0.028 -6.163 -0.730 1.178 -1.495 -0.359 D 308 306 6 309 3 0 0 16 35 -6.174 -1.687 -0.566 IL 309 309 3 309 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 86 ] 82 - U - - - ML 310 309 3 312 3 1 1 15 34 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 311 309 3 312 3 0 0 15 33 -6.174 -1.687 -0.566 IL 312 312 3 312 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 87 ] 83 - U - - - ML 313 312 3 315 3 1 1 13 32 -7.509 -0.028 -6.163 -0.703 -0.852 -1.379 1.291 D 314 312 3 315 3 0 0 13 32 -6.174 -1.687 -0.566 IL 315 315 3 315 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 88 ] 84 - U - - - ML 316 315 3 318 2 1 1 1 1 * 0.000 -0.703 -0.852 -1.379 1.291 D 317 315 3 318 2 0 0 0 0 * 0.000 IL 318 318 3 318 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 89 ] - - - - - - E 319 318 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME LDH1_5p_UTR ACC RF02697 DESC LDH1 5'UTR LENG 102 MAXL 205 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 04:05:10 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02697/CM NSEQ 4 EFFN 1.261719 CKSUM 4124771093 STATS LOCAL MSV -9.3218 0.71854 STATS LOCAL VITERBI -10.4292 0.71854 STATS LOCAL FORWARD -3.6590 0.71854 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40799 1.36483 1.52068 1.26806 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 0.00000 * 1 0.30043 2.64734 2.43048 2.29592 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 2 2.14357 0.42339 2.69253 1.83112 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 3 1.28032 2.31873 0.74691 1.89829 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 4 1.79372 0.82393 2.32893 1.21215 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 5 2.40760 1.50619 2.07087 0.57600 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 6 2.63317 0.43546 2.31708 1.70035 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 7 2.21630 2.60649 0.30091 2.56327 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 8 0.67391 2.14185 1.38526 2.09892 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 9 2.14357 0.42339 2.69253 1.83112 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 10 2.14357 0.42339 2.69253 1.83112 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 11 0.67440 2.14100 1.38543 2.09732 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 12 1.69868 2.30442 0.49792 2.21215 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 13 0.67413 2.14146 1.38534 2.09819 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 14 1.92518 1.46759 1.50027 0.91479 14 u - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 15 2.40983 1.32756 2.12016 0.64429 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 16 2.07291 2.13392 2.55949 0.38792 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 17 2.07291 2.13392 2.55949 0.38792 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 18 2.07291 2.13392 2.55949 0.38792 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 19 2.07291 2.13392 2.55949 0.38792 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 20 2.07291 2.13392 2.55949 0.38792 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 21 1.78426 2.28687 0.48479 2.16574 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 22 0.95091 1.83863 1.28999 1.71869 22 a - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 23 2.32851 1.61676 1.95883 0.57448 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 24 2.42992 1.43655 2.11318 0.59175 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 25 2.32156 1.61687 1.95716 0.57607 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 26 2.33068 1.61673 1.95935 0.57399 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 27 2.78209 0.35066 2.43203 1.92410 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 28 1.96916 2.47756 0.37971 2.38143 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 29 0.66125 2.23867 1.34307 2.15284 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 30 2.07291 2.13392 2.55949 0.38792 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 31 2.07291 2.13392 2.55949 0.38792 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 32 2.07291 2.13392 2.55949 0.38792 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 33 2.14357 0.42339 2.69253 1.83112 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 34 2.14357 0.42339 2.69253 1.83112 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 35 0.30043 2.64734 2.43048 2.29592 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 36 0.30043 2.64734 2.43048 2.29592 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 37 0.30043 2.64734 2.43048 2.29592 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 38 2.14357 0.42339 2.69253 1.83112 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 39 2.21365 2.60433 0.30187 2.55994 39 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 40 2.62840 0.43642 2.31541 1.69972 40 C - - ( 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 41 2.21479 2.60526 0.30145 2.56138 41 G - - ( 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 42 0.30043 2.64734 2.43048 2.29592 42 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 43 2.07291 2.13392 2.55949 0.38792 43 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 44 2.07291 2.13392 2.55949 0.38792 44 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 45 1.72697 1.14348 2.24637 0.92209 45 u - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 46 0.30043 2.64734 2.43048 2.29592 46 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 47 2.07291 2.13392 2.55949 0.38792 47 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 48 2.07291 2.13392 2.55949 0.38792 48 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 49 2.14357 0.42339 2.69253 1.83112 49 C - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 50 2.14357 0.42339 2.69253 1.83112 50 C - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 51 0.30043 2.64734 2.43048 2.29592 51 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 52 0.30043 2.64734 2.43048 2.29592 52 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 53 2.40760 1.50619 2.07087 0.57600 53 U - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 54 2.32576 0.60563 2.11641 1.44351 54 C - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 55 2.42227 0.55051 2.19759 1.49811 55 C - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 56 2.21563 2.60594 0.30115 2.56243 56 G - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 57 2.62940 0.43622 2.31576 1.69985 57 C - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 58 2.14357 0.42339 2.69253 1.83112 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 59 2.07291 2.13392 2.55949 0.38792 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 60 2.07291 2.13392 2.55949 0.38792 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 61 2.07109 2.84457 0.31926 2.41794 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 62 2.07291 2.13392 2.55949 0.38792 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 63 0.30043 2.64734 2.43048 2.29592 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 64 1.97082 2.47918 0.37885 2.38382 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 65 2.78353 0.35041 2.43254 1.92438 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 66 0.73855 2.36303 1.15299 2.18599 66 a - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 67 0.96513 2.27319 0.93162 2.10234 67 g - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 68 0.66125 2.23867 1.34307 2.15284 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 69 2.14357 0.42339 2.69253 1.83112 69 C - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 70 2.07291 2.13392 2.55949 0.38792 70 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 71 0.30043 2.64734 2.43048 2.29592 71 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 72 0.30043 2.64734 2.43048 2.29592 72 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 73 2.14357 0.42339 2.69253 1.83112 73 C - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 74 2.14357 0.42339 2.69253 1.83112 74 C - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 75 2.07109 2.84457 0.31926 2.41794 75 G - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 76 2.21377 2.60443 0.30182 2.56009 76 G - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 77 2.40233 1.50647 2.06936 0.57708 77 U - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 78 2.21486 2.60532 0.30143 2.56146 78 G - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 79 2.62879 0.43634 2.31554 1.69977 79 C - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 80 0.67410 2.14152 1.38532 2.09829 80 A - - < 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 81 2.14357 0.42339 2.69253 1.83112 81 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 82 2.07291 2.13392 2.55949 0.38792 82 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 83 2.07291 2.13392 2.55949 0.38792 83 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 84 2.07291 2.13392 2.55949 0.38792 84 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 85 2.33062 1.61673 1.95933 0.57400 85 U - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 86 1.97054 2.47891 0.37899 2.38342 86 G - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 87 2.78180 0.35071 2.43193 1.92404 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 88 0.66059 2.24009 1.34278 2.15515 88 A - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 89 2.77243 0.35234 2.42860 1.92220 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 90 2.07109 2.84457 0.31926 2.41794 90 G - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 91 2.07291 2.13392 2.55949 0.38792 91 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 92 2.07109 2.84457 0.31926 2.41794 92 G - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 93 2.07291 2.13392 2.55949 0.38792 93 U - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 94 0.30043 2.64734 2.43048 2.29592 94 A - - , 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 95 2.78146 0.35077 2.43181 1.92397 95 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 96 1.96904 2.47744 0.37977 2.38126 96 G - - ) 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 97 2.77159 0.35248 2.42830 1.92203 97 C - - ) 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 98 0.30043 2.64734 2.43048 2.29592 98 A - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 99 0.30043 2.64734 2.43048 2.29592 99 A - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 100 2.07109 2.84457 0.31926 2.41794 100 G - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 101 0.30043 2.64734 2.43048 2.29592 101 A - - : 1.38629 1.38629 1.38629 1.38629 0.05399 3.63902 3.63902 1.46634 0.26236 1.09861 0.40547 102 2.14357 0.42339 2.69253 1.83112 102 C - - : 1.38629 1.38629 1.38629 1.38629 0.02736 3.61239 * 1.46634 0.26236 0.00000 * //