# STOCKHOLM 1.0
#=GF ID psm_mec_RNA
#=GF AC RF02693
#=GF DE psm_mec locus RNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 85.0
#=GF NC 49.6
#=GF TC 148.8
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0045974; regulation of translation, ncRNA-mediated;
#=GF RN [1]
#=GF RM 24877726
#=GF RT Genome-wide analysis of the regulatory function mediated by the small
#=GF RT regulatory  psm-mec RNA of methicillin-resistant Staphylococcus aureus.
#=GF RA Cheung GY, Villaruz AE, Joo HS, Duong AC, Yeh AJ, Nguyen TH, Sturdevant
#=GF RA DE, Queck SY, Otto M
#=GF RL Int J Med Microbiol. 2014;304:637-644.
#=GF CC psm_mec locus strain dependent gene (immune evasion factor protein A)
#=GF CC regulatory RNA. 
#=GF WK Methicillin-resistant_Staphylococcus_aureus
#=GF SQ 4

BX571856.1/49332-49190 AUCUUAAAUAGAAAGAGGGUAUGCAUAUGGAUUUCACUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAGGCUUUCGGUUAAUUUU---------UU----------CAACUAAAAAACAGAGGAAAUAUUCAACGACUUGAUUGUUUC
Y13052.1/1021-1172     AUCUUAAAAGGAAAGAGGUUUUGCAAAUGGAUAUCGCUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAAACUUUCGGUUAAUUUUCAGUUUUAUUG----------CAUUAAAAAGGCAGAGGAAAUAUUCAAUCUUUUGAUUGUUUC
Y14051.1/1066-1207     AUCUUAAAUAGAAAGAG-GUAUGCAUAUGGAUUUCACUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAGGCUUUCGGUUAAUUUU---------UU----------CAACUAAAAAACAGAGGAAAUAUUCAACGACUUGAUUGUUUC
AB546780.1/10221-10069 AUCUUAAAUAGAAAGAGGGUUUGCAUAUGGACUUCACUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAGACUUUCGGUUAAGUUU---------UUUGUUUCAACGCAAUAAAAAAACAGAGGAAAUAUUCAACAAUUUGAUUGUUUC
#=GC SS_cons           ::::::<<<-<<<<<---<-<<<<<----<<<<<<<-<<<<<<<______>>>>>>>->>>--->>>>------>>>>>->--->>>>>->>>::::::.........::..........::::::::::::::::<<<<<<-<<<<____>>>>->>>>>>
#=GC RF                AUCUUAaacaGaaaGAGGgUauGCauAUGGauuuCaCugguGuuAUUACAagCauuaUuGaUUUaauCAAGACUuGCauUcAgaCuuuCGguuAAuUUU.........Uu..........CAauaAAAAaaCAGAGGaaauaUuCaacaauuuGaUuguuuC
//
