INFERNAL1/a [1.1.5 | Sep 2023] NAME RAGATH-5 ACC RF02685 DESC RAGATH-5 RNA STATES 163 NODES 47 CLEN 53 W 79 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 01:13:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02685/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 7.079224 CKSUM 578019699 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.50 NC 48.60 EFP7GF -14.8038 0.71923 ECMLC 0.50752 -11.28561 1.69039 1600000 869532 0.001380 ECMGC 0.35566 -23.17510 -5.94290 1600000 183546 0.002179 ECMLI 0.49315 -9.64370 2.82593 1600000 562122 0.002135 ECMGI 0.36668 -18.90828 -3.57583 1600000 110586 0.003617 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 112 -8.248 -8.455 -0.021 -6.869 IL 1 1 2 1 4 1 19 82 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 81 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 20 79 112 -9.202 -0.009 -7.856 -0.144 0.544 -0.283 -0.295 D 4 2 3 5 3 0 13 77 110 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 80 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 78 111 -9.202 -0.009 -7.856 -3.315 1.845 -2.783 -2.627 D 7 5 3 8 3 0 12 76 109 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 79 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 18 77 110 -9.202 -0.009 -7.856 -3.760 -5.227 1.947 -4.497 D 10 8 3 11 3 0 11 75 108 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 78 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 76 109 -9.202 -0.009 -7.856 -2.743 -2.852 1.854 -3.355 D 13 11 3 14 3 0 11 74 107 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 16 77 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 75 108 -9.202 -0.009 -7.856 1.947 -4.675 -4.136 -4.394 D 16 14 3 17 3 0 10 73 106 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 15 76 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 16 74 107 -9.202 -0.009 -7.856 -0.834 0.263 -1.528 0.920 D 19 17 3 20 3 0 9 72 105 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 14 75 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 15 73 106 -9.202 -0.009 -7.856 1.563 -3.052 -0.373 -2.713 D 22 20 3 23 3 0 8 71 104 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 74 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 14 72 105 -9.202 -0.009 -7.856 -3.513 1.839 -4.280 -1.823 D 25 23 3 26 3 0 8 70 103 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 73 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 14 71 104 -9.202 -0.009 -7.856 -2.093 1.207 -3.053 0.418 D 28 26 3 29 3 0 7 69 102 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 12 72 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 13 70 103 -9.202 -0.009 -7.856 -1.989 0.854 -2.905 0.853 D 31 29 3 32 3 0 7 68 101 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 12 69 102 -9.202 -0.009 -7.856 -2.413 -0.656 -3.182 1.617 D 34 32 3 35 3 0 6 67 100 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 10 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 11 68 101 -9.537 -0.008 -7.855 0.197 -1.622 1.155 -1.726 D 37 35 3 38 3 0 5 67 99 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 9 69 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 59 - c - - MR 39 38 3 41 3 1 11 67 100 -9.537 -0.008 -7.855 0.148 0.856 -0.927 -0.846 D 40 38 3 41 3 0 4 65 98 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 68 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 58 - C - - MR 42 41 3 44 3 1 10 66 99 -9.537 -0.008 -7.855 -1.382 1.625 -2.310 -1.599 D 43 41 3 44 3 0 3 64 97 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 8 67 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 57 - C - - MR 45 44 3 47 3 1 9 65 98 -9.537 -0.008 -7.855 -1.635 1.646 -2.095 -1.665 D 46 44 3 47 3 0 3 63 96 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 66 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 56 - C - - MR 48 47 3 50 3 1 9 64 97 -9.537 -0.008 -7.855 -1.228 1.327 -1.278 -0.616 D 49 47 3 50 3 0 3 62 95 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 65 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 55 - a - - MR 51 50 3 53 3 1 8 63 96 -9.537 -0.008 -7.855 0.379 -0.120 -0.214 -0.125 D 52 50 3 53 3 0 3 61 94 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 6 64 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 54 - C - - MR 54 53 3 56 3 1 7 62 95 -9.537 -0.008 -7.855 -0.717 1.054 -2.318 0.156 D 55 53 3 56 3 0 2 60 93 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 5 63 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 53 - c - - MR 57 56 3 59 3 1 7 61 94 -9.537 -0.008 -7.855 -0.805 0.979 -1.039 -0.045 D 58 56 3 59 3 0 2 59 92 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 5 62 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 52 - A - - MR 60 59 3 62 3 1 6 60 93 -9.537 -0.008 -7.855 1.947 -4.675 -4.136 -4.394 D 61 59 3 62 3 0 1 58 91 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 61 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 51 - C - - MR 63 62 3 65 3 1 5 59 92 -9.537 -0.008 -7.855 -2.326 1.834 -4.000 -2.535 D 64 62 3 65 3 0 1 57 90 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 4 60 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 50 - C - - MR 66 65 3 68 3 1 4 58 91 -9.537 -0.008 -7.855 -3.693 1.868 -4.416 -2.143 D 67 65 3 68 3 0 0 57 89 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 59 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 49 - C - - MR 69 68 3 71 5 1 3 57 90 -8.221 -0.018 -8.037 -8.249 -9.140 -3.220 1.826 -2.517 -2.536 D 70 68 3 71 5 0 0 56 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 2 57 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 48 G C - - MP 72 71 3 76 4 2 2 56 89 -8.248 -8.455 -0.436 -1.974 -4.039 -2.845 -3.933 1.965 -4.755 -4.579 0.283 -4.502 -1.428 3.030 -4.562 -0.511 -0.377 -3.851 -2.071 -2.908 ML 73 71 3 76 4 1 1 56 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 4 1 1 55 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 3 76 4 0 0 54 87 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 2 57 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 2 56 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - C - - - ML 78 77 6 80 3 1 2 54 87 -9.157 -0.011 -7.474 -1.543 1.623 -2.945 -1.161 D 79 77 6 80 3 0 0 53 86 -7.679 -0.145 -3.462 IL 80 80 3 80 3 1 1 55 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 47 - G - - MR 81 80 3 83 5 1 1 53 86 -8.221 -0.018 -8.037 -8.249 -9.140 0.448 -2.278 1.028 -1.358 D 82 80 3 83 5 0 0 52 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 54 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 46 c g - - MP 84 83 3 88 6 2 2 52 85 -9.747 -9.686 -0.014 -8.463 -8.743 -9.138 -1.170 1.479 -2.320 1.185 -1.081 -3.151 1.821 -2.609 -2.368 0.858 -2.925 -0.792 0.999 -2.456 -0.372 -1.535 ML 85 83 3 88 6 1 1 51 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 50 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 48 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 52 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 52 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 45 G C - - MP 90 89 6 94 6 2 2 50 83 -9.747 -9.686 -0.014 -8.463 -8.743 -9.138 -6.959 -4.216 -7.734 -1.423 -8.206 -5.533 -3.020 -7.825 -5.568 3.905 -5.805 -2.056 -3.382 -5.841 -5.256 -6.584 ML 91 89 6 94 6 1 1 49 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 49 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 46 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 50 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 50 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 44 G C - - MP 96 95 6 100 6 2 2 48 81 -9.747 -9.686 -0.014 -8.463 -8.743 -9.138 -6.406 -0.888 -6.776 -1.050 -7.675 -5.448 -2.547 -7.153 -5.429 3.829 -5.676 -1.829 -2.840 -5.558 -4.700 -5.672 ML 97 95 6 100 6 1 1 47 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 47 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 45 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 48 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 48 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 43 G C - - MP 102 101 6 106 4 2 2 46 79 -8.248 -8.455 -0.021 -6.869 -6.959 -4.216 -7.734 -1.423 -8.206 -5.533 -3.020 -7.825 -5.568 3.905 -5.805 -2.056 -3.382 -5.841 -5.256 -6.584 ML 103 101 6 106 4 1 1 46 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 45 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 44 77 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 47 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 46 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - C - - - ML 108 107 6 110 3 1 1 44 77 -3.579 -0.133 -7.855 -2.497 1.544 -3.454 -0.293 D 109 107 6 110 3 0 0 43 75 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 44 77 -2.612 -0.319 -4.851 0.000 0.000 0.000 0.000 [ MATR 32 ] - 42 - g - - MR 111 110 3 113 5 1 1 43 76 -8.221 -0.018 -8.037 -8.249 -9.140 0.854 -2.909 0.906 -2.437 D 112 110 3 113 5 0 0 42 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 43 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 41 c g - - MP 114 113 3 118 6 2 2 42 75 -9.747 -9.686 -0.014 -8.463 -8.743 -9.138 -0.615 -3.680 -3.739 -0.036 -1.848 -4.510 2.940 -3.604 -3.725 0.083 -4.231 -1.738 1.935 -3.925 -0.731 -2.671 ML 115 113 3 118 6 1 1 41 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 40 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 38 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 42 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 41 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 22 40 G C - - MP 120 119 6 124 6 2 2 40 73 -9.747 -9.686 -0.014 -8.463 -8.743 -9.138 -6.467 -4.069 -6.870 -1.103 -7.641 -5.470 -2.560 -7.187 -1.816 3.854 -5.694 -1.866 -2.880 -5.607 -4.715 -5.755 ML 121 119 6 124 6 1 1 39 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 39 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 36 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 40 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 39 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 23 39 C G - - MP 126 125 6 130 4 2 2 38 71 -8.248 -8.455 -0.021 -6.869 -7.193 -7.321 -6.366 -3.532 -4.745 -6.434 3.926 -5.896 -6.678 -3.492 -6.462 -5.477 -1.680 -7.101 -2.701 -5.481 ML 127 125 6 130 4 1 1 38 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 37 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 36 68 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 39 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 38 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - A - - - ML 132 131 6 134 3 1 1 36 69 -9.202 -0.009 -7.856 1.947 -4.675 -4.136 -4.394 D 133 131 6 134 3 0 0 34 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 37 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - C - - - ML 135 134 3 137 3 1 1 35 68 -9.202 -0.009 -7.856 -4.317 1.934 -4.952 -3.388 D 136 134 3 137 3 0 0 33 66 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 36 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - C - - - ML 138 137 3 140 3 1 1 34 67 -9.202 -0.009 -7.856 -4.317 1.934 -4.952 -3.388 D 139 137 3 140 3 0 0 32 65 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 35 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - G - - - ML 141 140 3 143 3 1 1 33 66 -9.202 -0.009 -7.856 -1.738 -2.335 1.742 -2.668 D 142 140 3 143 3 0 0 31 64 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 34 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - u - - - ML 144 143 3 146 3 1 1 32 65 -9.202 -0.405 -2.039 -0.227 0.154 -0.270 0.267 D 145 143 3 146 3 0 0 30 62 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 34 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - a - - - ML 147 146 3 149 3 1 1 32 64 -8.808 -0.011 -7.462 0.580 -1.163 -0.541 0.456 D 148 146 3 149 3 0 0 26 58 -8.809 -4.322 -0.077 IL 149 149 3 149 3 1 1 33 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - c - - - ML 150 149 3 152 3 1 1 31 63 -1.788 -0.505 -7.462 -0.662 0.828 -0.664 -0.057 D 151 149 3 152 3 0 0 21 54 -8.809 -0.170 -3.200 IL 152 152 3 152 3 1 1 32 64 -0.818 -1.253 -6.221 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - A - - - ML 153 152 3 155 3 1 1 14 32 -9.202 -0.009 -7.856 1.947 -4.675 -4.136 -4.394 D 154 152 3 155 3 0 0 15 33 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - A - - - ML 156 155 3 158 3 1 1 12 31 -9.202 -0.009 -7.856 1.849 -3.354 -3.289 -2.335 D 157 155 3 158 3 0 0 13 32 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - A - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 1.947 -4.675 -4.136 -4.394 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RAGATH-5 ACC RF02685 DESC RAGATH-5 RNA LENG 53 MAXL 122 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 01:13:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02685/CM NSEQ 39 EFFN 9.221558 CKSUM 578019699 STATS LOCAL MSV -7.0682 0.71923 STATS LOCAL VITERBI -8.2088 0.71923 STATS LOCAL FORWARD -3.8098 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49101 0.90984 1.40300 2.06826 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 0.00000 * 1 1.51986 0.96140 1.57068 1.65549 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 2 3.99182 0.08683 3.34460 3.52581 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 3 4.26885 5.32254 0.02768 4.77705 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 4 3.55767 3.41637 0.08338 3.98122 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 5 0.02634 4.95767 4.57153 4.75272 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 6 2.06058 1.17510 2.53088 0.72517 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 7 0.28087 3.81064 1.62946 3.62310 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 8 4.11073 0.09383 4.60242 2.76244 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 9 3.09723 0.51551 3.78841 1.09363 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 10 3.03743 0.75992 3.69726 0.77751 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 11 3.33771 1.85386 3.87021 0.23953 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 12 1.25489 2.58906 0.54476 2.81638 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 13 1.31155 2.57087 0.52831 2.74066 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.30721 4.83343 1.36045 1.46634 0.26236 1.09861 0.40547 14 2.58468 0.21849 3.68107 2.34699 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02141 4.54763 4.54763 1.46634 0.26236 0.06020 2.84004 15 0.94618 1.29855 1.87515 1.68459 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 16 3.74377 4.78929 0.04129 4.77153 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 17 2.78625 4.60609 0.08592 4.53861 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 18 3.74275 4.78750 0.04135 4.76907 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 19 3.38385 0.28735 4.05791 1.61670 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.11011 2.34021 4.83343 0.15781 1.92426 1.09861 0.40547 20 2.29814 0.61046 2.63990 1.25496 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 21 3.61531 4.63241 0.04799 4.58389 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 22 5.06010 0.03602 5.02626 3.79542 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 23 0.02634 4.95767 4.57153 4.75272 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 24 4.67002 0.03403 5.06136 4.03165 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 25 4.67002 0.03403 5.06136 4.03165 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 26 2.71400 3.04391 0.15829 3.42709 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 27 1.58637 1.25191 1.55874 1.20740 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.30774 4.83343 1.35893 1.46634 0.26236 1.09861 0.40547 28 0.96306 2.29540 1.77560 1.05505 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02142 4.54711 4.54711 1.46634 0.26236 3.53461 0.02960 29 1.94977 0.75333 1.85455 1.46806 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.39247 1.15830 4.54711 1.00357 0.45661 0.06011 2.84147 30 0.02634 4.95767 4.57153 4.75272 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 31 0.08796 3.94613 3.92908 3.09641 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 32 0.02634 4.95767 4.57153 4.75272 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 33 4.06080 5.18478 0.03063 4.91631 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 34 3.60305 0.07813 4.52176 3.29552 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 35 1.16402 2.81919 0.58642 2.63386 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 36 0.77076 3.72937 0.73145 3.43828 42 g - - - 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 37 4.84677 0.05115 4.68845 3.41715 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 38 4.66780 0.06069 4.49021 3.26310 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 39 4.88153 0.05047 4.70808 3.42325 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 40 1.68818 1.11134 1.24620 1.61731 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 41 1.06767 3.18595 0.63412 2.47158 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 42 2.62945 0.62300 2.42916 1.19258 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 43 3.94003 0.09825 3.14633 3.47002 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 44 4.23166 0.07594 4.68620 3.00826 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 45 3.08864 0.09385 4.40899 3.44671 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 46 0.02634 4.95767 4.57153 4.75272 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 47 2.04335 0.65761 2.13322 1.45301 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 48 1.94704 0.61083 3.20991 1.29446 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 49 1.11733 1.44992 1.52403 1.51218 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 50 2.36811 0.42096 2.29620 1.90191 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 51 2.65005 0.20605 2.90184 2.80283 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 52 2.43999 0.21931 3.08680 2.74701 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.01605 4.83343 4.83343 1.46634 0.26236 1.09861 0.40547 53 1.28864 0.73708 2.06281 2.13075 59 c - - : 1.38629 1.38629 1.38629 1.38629 0.00806 4.82544 * 1.46634 0.26236 0.00000 * //