INFERNAL1/a [1.1.4 | Dec 2020] NAME Twister-P5 ACC RF02684 DESC Type-P5 twister ribozyme STATES 189 NODES 50 CLEN 60 W 235 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 6 13:52:15 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /nfs/production/xfam/users/rfamprod/rfam-14.3/zasha/RF02684/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 215 EFFN 30.080185 CKSUM 64498176 NULL 0.000 0.000 0.000 0.000 GA 37.60 TC 37.60 NC 37.50 EFP7GF -12.9480 0.72662 ECMLC 0.65799 -8.92518 0.54068 1600000 608343 0.001973 ECMGC 0.38827 -19.49443 -6.33553 1600000 66219 0.006041 ECMLI 0.58648 -8.17274 1.89797 1600000 440783 0.002722 ECMGI 0.40890 -14.95932 -2.97612 1600000 53714 0.007447 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 1 1 235 412 -8.821 -19.291 -0.003 IL 1 1 2 1 3 5 26 239 416 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 4 25 237 414 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 120 3 23 236 412 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 4 207 383 -0.203 -2.978 -8.574 -9.214 [ MATP 3 ] 1 109 c g - - MP 5 4 1 9 6 2 6 207 383 -10.945 -10.884 -0.010 -7.973 -9.941 -10.336 -2.598 -3.546 -3.076 1.180 -3.424 -3.425 2.322 -3.844 -3.685 2.042 -4.239 -1.772 1.278 -3.775 -0.158 -2.545 ML 6 4 1 9 6 1 4 206 382 -9.125 -9.471 -0.122 -3.880 -9.321 -6.850 -1.273 -1.602 -2.422 1.618 MR 7 4 1 9 6 1 2 205 381 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 201 378 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 3 206 383 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 3 206 382 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 108 G C - - MP 11 10 6 15 6 2 4 205 381 -11.122 -11.061 -0.005 -9.838 -10.118 -10.513 -5.595 -4.174 -5.430 0.049 -6.420 -3.116 0.473 -6.074 -5.748 3.591 -5.991 -1.831 -0.305 -5.232 -3.539 -4.392 ML 12 10 6 15 6 1 2 203 380 -6.427 -6.773 -1.083 -1.182 -6.623 -4.152 0.152 -0.369 -0.433 0.458 MR 13 10 6 15 6 1 2 203 379 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 200 377 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 3 204 381 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 3 204 380 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 107 C G - - MP 17 16 6 21 6 2 2 203 379 -11.126 -11.065 -0.333 -7.630 -10.121 -2.327 -5.731 -5.452 -5.700 -0.025 -3.866 -6.492 3.290 -5.209 -5.574 0.913 -6.065 -3.040 1.441 -5.901 -2.019 -4.300 ML 18 16 6 21 6 1 2 202 378 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 2 201 378 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 200 376 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 2 203 379 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 2 203 379 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 106 A U - - MP 23 22 6 27 4 2 3 202 378 -9.723 -9.930 -0.008 -8.344 -6.724 -5.523 -6.765 3.725 -6.955 -8.595 -2.609 -6.594 -6.430 -2.155 -6.994 -2.847 1.072 -7.849 -4.563 -5.426 ML 24 22 6 27 4 1 1 200 377 -3.971 -4.153 -0.426 -2.882 0.180 -0.695 0.451 -0.181 MR 25 22 6 27 4 1 1 199 376 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 199 376 -8.348 -8.029 -0.086 -4.300 IL 27 27 5 27 4 1 1 201 378 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 201 377 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - G - - - ML 29 28 6 31 3 1 2 200 376 -11.039 -0.002 -9.693 -4.255 -7.306 1.974 -6.381 D 30 28 6 31 3 0 0 197 373 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 200 376 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 32 31 3 34 3 1 2 199 375 -6.874 -0.014 -9.693 1.990 -7.139 -6.466 -6.632 D 33 31 3 34 3 0 0 196 372 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 199 375 -1.653 -0.660 -4.353 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 35 34 3 37 3 1 2 198 374 -11.039 -0.002 -9.693 -2.595 -2.143 1.367 0.041 D 36 34 3 37 3 0 0 195 371 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 198 374 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - g - - - ML 38 37 3 40 3 1 1 197 373 -11.039 -0.002 -9.693 -1.581 -0.781 0.929 0.239 D 39 37 3 40 3 0 0 194 371 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 197 373 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - G - - - ML 41 40 3 43 3 1 1 196 372 -11.343 -0.002 -9.661 -0.746 -2.153 1.633 -3.689 D 42 40 3 43 3 0 0 194 370 -5.620 -0.734 -1.403 IL 43 43 3 43 3 1 1 196 372 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 105 - A - - MR 44 43 3 46 3 1 1 195 371 -11.343 -0.002 -9.661 1.990 -7.139 -6.466 -6.632 D 45 43 3 46 3 0 0 192 368 -6.390 -1.568 -0.620 IR 46 46 3 46 3 1 1 195 371 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 104 - A - - MR 47 46 3 49 3 1 1 194 370 -11.343 -0.002 -9.661 1.990 -7.139 -6.466 -6.632 D 48 46 3 49 3 0 0 191 367 -6.390 -1.568 -0.620 IR 49 49 3 49 3 1 1 194 370 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 103 - U - - MR 50 49 3 52 5 1 1 193 369 -9.996 -0.026 -7.107 -6.765 -10.915 -4.147 -3.419 -4.281 1.925 D 51 49 3 52 5 0 0 190 366 -5.352 -0.707 -2.978 -4.409 -2.404 IR 52 52 3 52 5 1 1 192 369 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 102 c g - - MP 53 52 3 57 6 2 2 192 368 -11.107 -11.047 -0.008 -9.823 -8.482 -10.498 -3.659 -3.651 1.755 0.822 -3.694 -4.651 1.916 -3.684 -3.244 0.891 -1.844 1.611 -0.099 -3.940 -1.702 -2.966 ML 54 52 3 57 6 1 1 189 366 -6.614 -6.961 -0.899 -1.369 -6.810 -4.340 0.445 -0.524 -0.246 0.137 MR 55 52 3 57 6 1 1 189 365 -7.405 -6.134 -1.018 -6.112 -1.246 -4.325 0.122 -0.422 0.253 -0.039 D 56 52 3 57 6 0 0 181 357 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 191 367 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 190 367 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 101 c g - - MP 59 58 6 63 6 2 2 190 366 -11.123 -11.062 -0.016 -8.670 -10.118 -7.270 -4.590 -3.911 -4.694 2.086 -4.049 -5.539 2.545 -3.641 -3.958 0.452 -5.201 -0.124 1.483 -4.851 -1.729 -3.318 ML 60 58 6 63 6 1 1 187 363 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 187 363 -7.108 -5.837 -1.402 -5.815 -0.949 -4.029 0.647 -0.576 -0.279 -0.091 D 62 58 6 63 6 0 0 178 354 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 189 365 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 188 365 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 100 g c - - MP 65 64 6 69 6 2 2 188 364 -11.115 -11.055 -0.008 -9.831 -8.449 -10.506 -5.282 -4.106 -5.143 1.355 -4.592 -5.786 2.010 -5.528 -5.448 2.883 -5.763 -1.091 0.129 -5.058 -2.773 -4.034 ML 66 64 6 69 6 1 1 185 362 -6.352 -6.698 -1.172 -1.107 -6.548 -4.077 0.239 -0.056 -0.414 0.148 MR 67 64 6 69 6 1 1 185 361 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 174 351 -9.531 -8.229 -4.026 -4.708 -4.726 -0.221 IL 69 69 5 69 6 1 1 187 363 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 186 363 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 99 c g - - MP 71 70 6 75 6 2 2 186 362 -11.114 -11.054 -0.005 -9.830 -10.110 -10.505 -5.272 -3.652 -5.196 1.240 -4.932 -5.906 2.567 -5.274 -5.344 2.369 -5.741 -0.822 0.501 -5.196 -2.146 -4.007 ML 72 70 6 75 6 1 1 184 360 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 183 359 -7.113 -5.842 -1.394 -5.820 -0.954 -4.034 0.296 -0.589 0.241 -0.111 D 74 70 6 75 6 0 0 170 347 -9.531 -8.229 -4.026 -4.708 -4.726 -0.221 IL 75 75 5 75 6 1 1 185 361 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 184 361 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 98 g c - - MP 77 76 6 81 6 2 2 184 360 -11.117 -11.056 -0.179 -7.131 -10.113 -3.215 -5.244 -2.898 -5.082 1.287 -5.911 -5.697 1.983 -5.667 -5.471 2.864 -5.745 -0.247 -0.022 -4.959 -3.089 -4.027 ML 78 76 6 81 6 1 1 182 359 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 181 357 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 165 341 -9.531 -8.229 -4.026 -4.708 -4.726 -0.221 IL 81 81 5 81 6 1 1 184 360 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 183 360 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 97 g c - - MP 83 82 6 87 6 2 2 183 359 -10.944 -10.883 -0.129 -6.489 -9.940 -3.788 -4.520 -2.411 -4.534 0.817 -4.490 -5.275 2.095 -3.885 -4.689 2.479 -5.131 0.248 1.187 -4.560 -1.937 -2.807 ML 84 82 6 87 6 1 1 181 358 -6.654 -7.000 -0.865 -1.409 -6.850 -4.380 0.131 -0.021 -0.240 0.101 MR 85 82 6 87 6 1 1 179 356 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 152 327 -12.169 -10.867 -6.664 -7.346 -7.364 -0.033 IL 87 87 5 87 6 1 1 182 359 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 182 358 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 96 g c - - MP 89 88 6 93 6 2 2 182 358 -10.832 -10.771 -0.223 -8.160 -9.828 -2.862 -4.287 -2.976 -4.338 1.804 -2.703 -5.110 2.251 -4.511 -4.444 2.293 -4.920 -1.041 0.232 -4.401 -1.170 -2.652 ML 90 88 6 93 6 1 1 180 356 -6.806 -7.152 -0.751 -1.561 -7.002 -4.531 0.310 -0.365 -0.033 0.009 MR 91 88 6 93 6 1 1 177 353 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 147 321 -12.752 -11.450 -7.247 -7.929 -7.947 -0.022 IL 93 93 5 93 6 1 1 181 358 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 181 358 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 95 c g - - MP 95 94 6 99 6 2 2 181 357 -10.634 -10.574 -0.243 -7.789 -9.630 -2.756 -4.047 -3.978 -3.009 0.579 -3.104 -4.994 2.591 -4.111 -4.142 1.861 -4.321 -0.370 1.425 -4.302 -0.601 -3.090 ML 96 94 6 99 6 1 1 176 352 -6.381 -6.727 -1.136 -1.136 -6.577 -4.106 0.201 -0.364 -0.379 0.384 MR 97 94 6 99 6 1 1 172 349 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 143 315 -13.419 -12.117 -7.914 -8.596 -8.613 -0.014 IL 99 99 5 99 6 1 1 181 357 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 181 357 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 94 a u - - MP 101 100 6 105 4 2 2 181 357 -0.389 -3.018 -3.208 -7.837 -3.291 -3.259 -3.430 1.967 -3.183 -4.260 1.593 -3.605 -3.479 1.347 -4.020 0.658 1.440 -3.366 0.333 -2.427 ML 102 100 6 105 4 1 1 164 340 -2.769 -4.058 -0.625 -2.788 0.284 -0.599 0.263 -0.117 MR 103 100 6 105 4 1 1 151 327 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 104 100 6 105 4 0 0 141 311 -9.274 -1.946 -0.490 -5.226 IL 105 105 5 105 4 1 1 181 357 -0.155 -3.336 -8.485 -12.223 0.000 0.000 0.000 0.000 IR 106 106 6 106 3 1 1 152 321 -0.158 -3.279 -11.031 0.000 0.000 0.000 0.000 [ MATL 24 ] 45 - u - - - ML 107 106 6 109 3 1 1 14 32 -11.039 -0.002 -9.693 -0.408 -1.103 0.217 0.694 D 108 106 6 109 3 0 0 16 34 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 46 - a - - - ML 110 109 3 112 3 1 1 13 31 -11.039 -0.002 -9.693 0.307 -0.281 -0.431 0.261 D 111 109 3 112 3 0 0 15 33 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 47 - a - - - ML 113 112 3 115 3 1 1 11 29 -11.039 -0.029 -5.685 0.323 0.080 -0.581 0.034 D 114 112 3 115 3 0 0 13 32 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 48 - a - - - ML 116 115 3 118 2 1 1 1 1 * 0.000 0.559 -0.500 0.117 -0.444 D 117 115 3 118 2 0 0 0 0 * 0.000 IL 118 118 3 118 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 119 118 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 120 3 1 121 3 0 2 111 209 -11.039 -0.002 -9.693 IL 121 121 2 121 3 1 1 112 210 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 110 - G - - - ML 122 121 2 124 3 1 2 111 209 -11.039 -0.002 -9.693 0.622 -2.840 1.179 -4.136 D 123 121 2 124 3 0 0 105 203 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 111 209 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 111 - C - - - ML 125 124 3 127 3 1 1 110 208 -1.570 -0.598 -8.559 -2.154 1.622 -0.979 -2.401 D 126 124 3 127 3 0 0 99 196 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 2 114 212 -0.288 -2.478 -9.458 0.000 0.000 0.000 0.000 [ MATL 32 ] 128 - A - - - ML 128 127 3 130 3 1 2 100 196 -11.037 -0.002 -9.691 1.007 -1.581 0.009 -0.621 D 129 127 3 130 3 0 0 97 194 -6.328 -1.841 -0.497 IL 130 130 3 130 3 1 1 100 197 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 129 - g - - - ML 131 130 3 133 3 1 1 99 195 -11.037 -0.002 -9.691 0.598 -1.885 0.628 -0.578 D 132 130 3 133 3 0 0 97 193 -6.328 -1.841 -0.497 IL 133 133 3 133 3 1 1 99 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 130 - a - - - ML 134 133 3 136 3 1 1 98 194 -11.037 -0.615 -1.528 0.427 -1.187 0.085 0.208 D 135 133 3 136 3 0 0 96 193 -6.328 -1.841 -0.497 IL 136 136 3 136 3 1 1 99 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 131 - a - - - ML 137 136 3 139 5 1 1 97 194 -1.332 -0.740 -9.211 -9.423 -10.315 0.540 -0.024 -0.467 -0.254 D 138 136 3 139 5 0 0 95 192 -1.600 -0.640 -8.237 -6.145 -6.525 IL 139 139 3 139 5 1 1 101 198 -0.275 -2.544 -9.749 -11.582 -10.855 0.000 0.000 0.000 0.000 [ MATP 36 ] 154 171 c g - - MP 140 139 3 144 6 2 2 28 46 -11.124 -11.063 -0.005 -9.840 -10.119 -10.514 -0.838 -3.988 -2.983 1.094 -3.704 -4.915 2.805 -4.173 -4.084 1.379 -4.092 -1.705 1.155 -4.216 -0.886 -3.137 ML 141 139 3 144 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 28 46 -7.069 -5.798 -1.470 -5.776 -0.910 -3.989 0.584 -0.533 -0.235 -0.057 D 143 139 3 144 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 155 170 C G - - MP 146 145 6 150 6 2 2 26 44 -11.126 -11.065 -0.005 -9.841 -10.121 -10.516 -5.891 -5.633 -5.834 1.727 -3.960 -6.583 3.227 -5.333 -5.720 -0.618 -6.192 -3.241 1.014 -6.049 -1.716 -4.452 ML 147 145 6 150 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 156 169 G C - - MP 152 151 6 156 4 2 2 24 42 -10.117 -10.324 -0.006 -8.738 -5.356 -3.472 -5.183 0.845 -6.290 -5.756 0.876 -5.857 -5.583 3.460 -5.835 -1.367 -0.835 -5.032 -3.372 -4.143 ML 153 151 6 156 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 157 - G - - - ML 158 157 6 160 3 1 1 22 40 -11.039 -0.002 -9.693 -5.732 -7.462 1.987 -6.486 D 159 157 6 160 3 0 0 22 40 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 158 - U - - - ML 161 160 3 163 3 1 1 20 38 -6.367 -0.019 -9.693 -5.642 -4.459 -6.429 1.972 D 162 160 3 163 3 0 0 20 38 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 22 40 -1.738 -0.613 -4.438 0.000 0.000 0.000 0.000 [ MATL 41 ] 160 - C - - - ML 164 163 3 166 3 1 1 19 37 -11.039 -0.002 -9.693 -3.794 1.644 -2.303 -0.739 D 165 163 3 166 3 0 0 20 38 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 161 - c - - - ML 167 166 3 169 3 1 1 18 36 -11.039 -0.002 -9.693 0.218 0.864 -0.635 -1.422 D 168 166 3 169 3 0 0 19 37 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 162 - C - - - ML 170 169 3 172 3 1 1 17 35 -11.039 -0.002 -9.693 0.132 1.321 -2.220 -2.390 D 171 169 3 172 3 0 0 18 36 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 163 - A - - - ML 173 172 3 175 3 1 1 16 34 -11.039 -0.002 -9.693 1.954 -4.702 -4.773 -4.283 D 174 172 3 175 3 0 0 17 35 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 164 - A - - - ML 176 175 3 178 3 1 1 14 32 -11.039 -0.002 -9.693 1.990 -7.139 -6.466 -6.632 D 177 175 3 178 3 0 0 16 34 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 165 - G - - - ML 179 178 3 181 3 1 1 13 30 -11.039 -0.002 -9.693 -2.724 -0.812 1.622 -2.317 D 180 178 3 181 3 0 0 14 33 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 166 - u - - - ML 182 181 3 184 3 1 1 12 26 -5.777 -0.028 -9.693 -3.357 0.876 -2.816 0.945 D 183 181 3 184 3 0 0 11 25 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 14 28 -1.872 -0.546 -4.572 0.000 0.000 0.000 0.000 [ MATL 48 ] 168 - C - - - ML 185 184 3 187 2 1 1 1 1 * 0.000 -6.417 1.985 -6.867 -5.510 D 186 184 3 187 2 0 0 0 0 * 0.000 IL 187 187 3 187 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 188 187 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Twister-P5 ACC RF02684 DESC Type-P5 twister ribozyme LENG 60 MAXL 248 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 6 13:52:15 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 215 EFFN 192.379990 CKSUM 64498176 STATS LOCAL MSV -8.3602 0.72662 STATS LOCAL VITERBI -9.1307 0.72662 STATS LOCAL FORWARD -2.9613 0.72662 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43046 1.33758 1.18843 1.64185 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 0.00000 * 1 1.97453 1.17409 1.34262 1.23473 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 2 3.35870 2.35932 0.19399 3.05611 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 3 3.02687 0.38515 2.17682 1.84653 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.28141 7.68340 1.40721 1.46634 0.26236 1.09861 0.40547 4 0.15669 6.21267 4.68644 2.01135 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.00122 7.40321 7.40321 1.46634 0.26236 0.00375 5.58680 5 4.55520 8.29226 0.01133 7.58593 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 6 0.00132 8.08562 7.55587 7.63192 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.00943 4.71888 7.68340 0.10016 2.35069 1.09861 0.40547 7 4.29607 3.03378 0.41787 1.27369 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 8 3.06780 1.95179 0.68060 1.18697 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 9 1.92869 2.94953 0.22382 5.86594 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.00978 7.68340 4.68120 1.46634 0.26236 1.09861 0.40547 10 0.96007 1.39674 1.03715 4.18182 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.00325 7.67456 5.88585 1.46634 0.26236 0.09472 2.40378 11 1.17749 0.93554 2.02859 1.78348 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00809 7.68111 4.88039 1.46634 0.26236 0.28845 1.38401 12 1.84150 1.25083 0.69947 2.84205 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.00334 7.67626 5.85281 1.46634 0.26236 2.91541 0.05570 13 1.89613 0.87331 1.02801 2.59607 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.00093 7.67385 7.67385 1.46634 0.26236 1.33989 0.30364 14 1.88594 1.23935 0.68725 2.88625 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.14239 7.67626 2.02306 1.46634 0.26236 2.91541 0.05570 15 2.25535 1.19818 0.82056 1.87578 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.09560 7.53494 2.40093 1.46634 0.26236 5.71261 0.00331 16 1.37788 1.07738 1.06588 2.76504 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.19371 7.44052 1.74001 1.46634 0.26236 6.15562 0.00212 17 2.49644 0.84958 1.17232 1.71268 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.22351 7.24824 1.61155 1.46634 0.26236 6.64558 0.00130 18 1.17387 1.79602 1.29990 1.37708 19 a - - < 1.38629 1.38629 1.38629 1.38629 1.75630 0.19064 7.02651 2.31782 0.10368 0.00191 6.26236 19 1.82307 2.31117 1.16171 0.85244 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 20 1.17078 1.56714 1.68635 1.21726 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 21 1.15601 1.27223 1.81293 1.41933 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01452 7.68340 4.27211 1.46634 0.26236 1.09861 0.40547 22 0.96095 1.74516 1.24169 1.87108 48 a - - _ 1.38629 1.38629 1.38629 1.38629 2.42444 0.56699 1.06641 2.40208 0.09489 3.47520 0.03144 23 1.81266 1.94902 1.37402 0.81807 94 u - - > 1.38629 1.38629 1.38629 1.38629 0.14521 7.24857 2.00660 1.46634 0.26236 1.43077 0.27328 24 1.87311 1.34971 0.77547 2.06710 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.01824 7.24488 4.05364 1.46634 0.26236 0.93555 0.49819 25 3.05507 1.10808 1.04718 1.30283 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01079 7.42674 4.59145 1.46634 0.26236 0.94113 0.49460 26 1.94614 0.98448 1.19318 1.71321 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.00108 7.52634 7.52634 1.46634 0.26236 0.05633 2.90453 27 2.91405 0.76929 1.23493 1.65262 98 c - - > 1.38629 1.38629 1.38629 1.38629 0.00093 7.67626 7.67626 1.46634 0.26236 2.91541 0.05570 28 2.65593 1.10527 0.86205 1.73527 99 g - - > 1.38629 1.38629 1.38629 1.38629 0.00262 7.67626 6.14315 1.46634 0.26236 2.91541 0.05570 29 2.85061 0.73322 1.25220 1.73751 100 c - - > 1.38629 1.38629 1.38629 1.38629 0.00093 7.67458 7.67458 1.46634 0.26236 0.09491 2.40193 30 1.79067 2.66520 0.93819 0.98825 101 g - - > 1.38629 1.38629 1.38629 1.38629 0.00751 7.68340 4.95826 1.46634 0.26236 1.09861 0.40547 31 4.07922 2.43902 0.58795 1.07773 102 G - - > 1.38629 1.38629 1.38629 1.38629 0.00093 7.67682 7.67682 1.46634 0.26236 0.12317 2.15516 32 5.96897 4.43459 5.02818 0.02119 103 U - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 33 0.00132 8.08562 7.55587 7.63192 104 A - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 34 0.00132 8.08562 7.55587 7.63192 105 A - - - 1.38629 1.38629 1.38629 1.38629 0.28788 7.68340 1.38753 1.46634 0.26236 1.09861 0.40547 35 2.01175 5.82563 6.25436 0.14923 106 U - - > 1.38629 1.38629 1.38629 1.38629 0.00123 7.39675 7.39675 1.46634 0.26236 0.00368 5.60641 36 1.84742 2.18506 0.38471 3.01111 107 G - - > 1.38629 1.38629 1.38629 1.38629 0.00391 7.68340 5.67248 1.46634 0.26236 1.09861 0.40547 37 3.11558 0.18204 2.44588 3.34024 108 C - - > 1.38629 1.38629 1.38629 1.38629 0.15788 7.68042 1.92700 1.46634 0.26236 0.23723 1.55501 38 1.93340 1.19382 0.90529 1.91149 109 g - - > 1.38629 1.38629 1.38629 1.38629 0.00108 7.52711 7.52711 1.46634 0.26236 0.00632 5.06660 39 0.93855 3.53662 0.54793 6.46876 110 G - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 40 3.02034 0.24283 1.94189 3.75590 111 C - - - 1.38629 1.38629 1.38629 1.38629 0.44002 1.03846 6.22563 1.77550 0.18561 1.09861 0.40547 41 0.62497 2.75706 1.33023 1.98902 128 A - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68188 7.68188 1.46634 0.26236 1.83997 0.17295 42 0.92612 3.07103 0.89006 1.91795 129 g - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68188 7.68188 1.46634 0.26236 1.83997 0.17295 43 1.07017 2.39990 1.26522 1.25826 130 a - - - 1.38629 1.38629 1.38629 1.38629 0.26994 7.68188 1.44344 1.46634 0.26236 1.83997 0.17295 44 0.96022 1.33011 1.71676 1.75391 131 a - - - 1.38629 1.38629 1.38629 1.38629 0.76302 0.62897 7.41315 1.77701 0.18530 0.01029 4.58172 45 1.71962 0.69061 1.71256 1.97190 154 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68188 7.68188 1.46634 0.26236 0.38220 1.14683 46 1.48909 0.44813 3.80282 2.17777 155 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 47 2.34307 2.10041 0.27948 3.67346 156 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 48 7.06381 8.29247 0.00161 7.59055 157 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 49 7.85299 5.13924 8.49045 0.00648 158 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01324 4.36637 7.68340 0.07101 2.68028 1.09861 0.40547 50 6.08208 0.21886 2.97030 1.94496 160 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 51 1.23738 0.69231 1.82930 3.01774 161 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 52 1.26566 0.41887 3.05340 4.34605 162 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 53 0.02003 5.14299 5.40229 4.65829 163 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 54 0.00132 8.08562 7.55587 7.63192 164 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 55 4.25541 1.86361 0.23260 3.26412 165 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 56 5.56880 0.75241 3.52170 0.70238 166 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01978 3.95663 7.68340 0.04746 3.07142 1.09861 0.40547 57 8.01925 0.00131 8.42508 7.18388 168 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 58 3.72853 0.28758 2.09111 2.27936 169 C - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 59 2.23067 3.83359 0.43953 1.48470 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68340 7.68340 1.46634 0.26236 1.09861 0.40547 60 1.82858 1.77820 0.63836 1.95011 171 G - - > 1.38629 1.38629 1.38629 1.38629 0.00046 7.68294 * 1.46634 0.26236 0.00000 * //