INFERNAL1/a [1.1.5 | Sep 2023] NAME NsiR4 ACC RF02677 DESC Nitrogen stress-induced RNA 4 STATES 204 NODES 59 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02677/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.957031 CKSUM 788737166 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.40 NC 39.90 EFP7GF -8.6488 0.71903 ECMLC 0.69090 -8.52072 0.91614 1600000 814228 0.001474 ECMGC 0.39772 -17.10834 -3.12159 1600000 104221 0.003838 ECMLI 0.61274 -8.23694 1.83602 1600000 575049 0.002087 ECMGI 0.42723 -12.37087 -0.01422 1600000 78482 0.005097 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.959 -7.166 -0.053 -5.580 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 18 82 102 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 4 2 3 5 3 0 16 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 2 1 17 81 101 -8.369 -0.004 1.724 -2.393 -2.023 -1.937 D 7 5 3 8 2 0 16 80 100 -8.445 -0.004 IL 8 8 3 8 2 1 17 82 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 45 0 16 80 100 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 0 25 43 -0.044 -6.839 -6.247 -6.887 [ MATP 5 ] 3 13 G C - - MP 11 10 1 15 6 2 2 25 44 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 12 10 1 15 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 1 15 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 12 A U - - MP 17 16 6 21 6 2 2 23 42 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.814 -2.840 -3.831 3.346 -4.181 -5.245 0.121 -3.872 -3.722 1.054 -4.271 -0.312 -0.297 -4.429 -1.820 -2.664 ML 18 16 6 21 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 11 C G - - MP 23 22 6 27 4 2 2 21 39 -6.959 -7.166 -0.053 -5.580 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 24 22 6 27 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 27 27 5 27 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 29 28 6 31 3 1 1 18 36 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 30 28 6 31 3 0 0 17 36 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - U - - - ML 32 31 3 34 3 1 1 16 35 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 33 31 3 34 3 0 0 16 34 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 35 34 3 37 3 1 1 15 33 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 36 34 3 37 3 0 0 15 33 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 38 37 3 40 3 1 1 13 31 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 39 37 3 40 3 0 0 13 32 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 41 40 3 43 2 1 1 1 1 * 0.000 1.724 -2.393 -2.023 -1.937 D 42 40 3 43 2 0 0 0 0 * 0.000 IL 43 43 3 43 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 13 ] - - - - - - E 44 43 3 -1 0 0 0 0 0 [ BEGR 14 ] - - - - - - S 45 9 1 46 3 0 6 69 89 -7.975 -0.020 -6.629 IL 46 46 2 46 3 1 6 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 47 46 2 49 3 1 7 69 88 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 48 46 2 49 3 0 1 67 87 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 5 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 50 49 3 52 3 1 6 68 87 -2.840 -0.234 -6.629 1.724 -2.393 -2.023 -1.937 D 51 49 3 52 3 0 0 65 85 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 5 68 88 -1.839 -0.562 -4.539 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 53 52 3 55 3 1 6 66 86 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 54 52 3 55 3 0 0 65 84 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 56 55 3 58 3 1 5 65 85 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 57 55 3 58 3 0 0 64 83 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 59 58 3 61 3 1 5 64 84 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 60 58 3 61 3 0 0 63 82 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 3 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 62 61 3 64 3 1 4 63 83 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 63 61 3 64 3 0 0 61 81 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 2 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 65 64 3 67 3 1 4 62 81 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 66 64 3 67 3 0 0 60 80 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 68 67 3 70 3 1 3 61 80 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 69 67 3 70 3 0 0 59 79 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 2 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 71 70 3 73 3 1 3 60 79 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 72 70 3 73 3 0 0 58 78 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 74 73 3 76 3 1 2 59 78 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 75 73 3 76 3 0 0 57 77 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 77 76 3 79 3 1 2 58 77 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 78 76 3 79 3 0 0 56 76 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 80 79 3 82 3 1 2 57 76 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 81 79 3 82 3 0 0 55 75 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 83 82 3 85 3 1 1 56 75 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 84 82 3 85 3 0 0 54 74 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 86 85 3 88 3 1 1 54 74 -7.975 -0.020 -6.629 -1.603 -2.827 1.729 -2.214 D 87 85 3 88 3 0 0 53 73 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 89 88 3 91 3 1 1 53 73 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 90 88 3 91 3 0 0 52 72 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 92 91 3 94 3 1 1 52 72 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 93 91 3 94 3 0 0 51 70 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 95 94 3 97 3 1 1 51 71 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 96 94 3 97 3 0 0 50 69 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 98 97 3 100 3 1 1 50 69 -7.975 -0.020 -6.629 -1.603 -2.827 1.729 -2.214 D 99 97 3 100 3 0 0 49 68 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 101 100 3 103 3 1 1 49 68 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 102 100 3 103 3 0 0 48 67 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 104 103 3 106 3 1 1 48 67 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 105 103 3 106 3 0 0 47 66 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 107 106 3 109 3 1 1 47 66 -7.975 -0.020 -6.629 -0.006 -0.874 -1.239 1.025 D 108 106 3 109 3 0 0 46 65 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 110 109 3 112 3 1 1 46 65 -7.975 -0.227 -2.822 1.150 -1.457 -0.179 -0.906 D 111 109 3 112 3 0 0 45 64 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 113 112 3 115 3 1 1 45 64 -7.772 -0.024 -6.426 -1.139 -1.199 -1.852 1.502 D 114 112 3 115 3 0 0 43 62 -7.327 -2.840 -0.228 IL 115 115 3 115 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - c - - - ML 116 115 3 118 3 1 1 44 63 -7.772 -0.024 -6.426 -0.594 0.663 -1.367 0.451 D 117 115 3 118 3 0 0 42 61 -7.327 -2.840 -0.228 IL 118 118 3 118 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - c - - - ML 119 118 3 121 5 1 1 43 62 -6.927 -0.044 -6.742 -6.954 -7.846 -0.283 0.464 -0.120 -0.186 D 120 118 3 121 5 0 0 42 60 -5.715 -0.421 -4.976 -3.351 -3.264 IL 121 121 3 121 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 67 a u - - MP 122 121 3 126 6 2 2 42 61 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -2.908 -2.583 -3.005 2.788 -2.962 -3.963 0.931 0.164 -3.032 1.096 -3.567 -0.498 0.589 -3.257 -0.868 -2.065 ML 123 121 3 126 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 66 a u - - MP 128 127 6 132 6 2 2 40 59 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.350 -2.363 -3.468 2.449 -4.060 -4.748 0.182 -3.647 -3.324 1.593 -3.864 2.047 -0.074 -3.886 -1.708 -2.302 ML 129 127 6 132 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 65 g c - - MP 134 133 6 138 6 2 2 38 57 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.353 -2.359 -3.421 1.822 -3.953 -4.389 0.372 -3.697 -3.394 2.436 -3.869 1.731 0.103 -3.623 -1.543 -2.315 ML 135 133 6 138 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 64 C G - - MP 140 139 6 144 6 2 2 36 55 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.789 -3.760 -3.622 -0.044 -2.497 -4.140 3.015 -3.236 -3.644 0.175 -4.004 -1.789 1.118 -3.907 1.266 -2.516 ML 141 139 6 144 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 44 63 C G - - MP 146 145 6 150 6 2 2 34 53 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 147 145 6 150 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 45 62 G C - - MP 152 151 6 156 6 2 2 32 51 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 153 151 6 156 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 46 61 C G - - MP 158 157 6 162 6 2 2 30 49 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 159 157 6 162 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 47 60 C G - - MP 164 163 6 168 6 2 2 28 47 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 165 163 6 168 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 59 c g - - MP 170 169 6 174 4 2 2 26 45 -6.959 -7.166 -0.053 -5.580 -3.333 -3.318 -3.280 0.157 -2.423 -3.885 2.617 1.631 -3.311 0.336 -3.723 -1.480 1.091 -3.528 -0.191 -2.275 ML 171 169 6 174 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 176 175 6 178 3 1 1 23 42 -7.975 -0.020 -6.629 1.176 -1.470 -0.230 -0.923 D 177 175 6 178 3 0 0 22 41 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 179 178 3 181 3 1 1 22 40 -7.975 -0.020 -6.629 -0.795 -0.110 -1.547 1.108 D 180 178 3 181 3 0 0 21 40 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - u - - - ML 182 181 3 184 3 1 1 20 39 -7.975 -0.020 -6.629 0.558 -0.851 -1.058 0.578 D 183 181 3 184 3 0 0 20 38 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - g - - - ML 185 184 3 187 3 1 1 19 38 -2.886 -0.227 -6.629 -0.442 -0.490 0.919 -0.597 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 20 38 -1.828 -0.567 -4.528 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - U - - - ML 188 187 3 190 3 1 1 18 36 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 189 187 3 190 3 0 0 17 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - u - - - ML 191 190 3 193 3 1 1 16 35 -7.975 -0.020 -6.629 -0.713 0.420 -1.490 0.762 D 192 190 3 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - u - - - ML 194 193 3 196 3 1 1 15 33 -7.975 -0.020 -6.629 -0.717 0.512 -1.498 0.688 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - - - ML 197 196 3 199 3 1 1 13 31 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 -1.603 -2.827 1.729 -2.214 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME NsiR4 ACC RF02677 DESC Nitrogen stress-induced RNA 4 LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02677/CM NSEQ 4 EFFN 2.410156 CKSUM 788737166 STATS LOCAL MSV -8.2863 0.71903 STATS LOCAL VITERBI -8.8133 0.71903 STATS LOCAL FORWARD -3.6274 0.71903 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30742 1.35083 1.52712 1.37319 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 0.00000 * 1 0.14948 3.27243 2.99326 2.97971 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 2 0.14948 3.27243 2.99326 2.97971 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 3 2.61291 3.28136 0.16336 3.22343 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 4 0.32796 2.81483 1.86109 2.74590 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 5 3.23379 0.23185 3.01048 2.13487 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 6 0.14948 3.27243 2.99326 2.97971 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 7 2.64105 2.59973 3.15970 0.20828 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 8 0.14948 3.27243 2.99326 2.97971 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 9 0.14948 3.27243 2.99326 2.97971 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 10 0.14948 3.27243 2.99326 2.97971 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 11 2.41018 3.17352 0.20108 2.98584 11 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 12 2.96219 2.15772 2.62131 0.27444 12 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 13 3.39179 0.19717 3.09904 2.30050 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 14 0.14948 3.27243 2.99326 2.97971 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 15 0.14948 3.27243 2.99326 2.97971 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.21161 1.76401 3.94446 0.21243 1.65348 1.09861 0.40547 16 2.64105 2.59973 3.15970 0.20828 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 17 0.14948 3.27243 2.99326 2.97971 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 18 2.64105 2.59973 3.15970 0.20828 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 19 2.88654 0.19347 3.46279 2.42145 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 20 0.14948 3.27243 2.99326 2.97971 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 21 2.88654 0.19347 3.46279 2.42145 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 22 2.88654 0.19347 3.46279 2.42145 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 23 2.88654 0.19347 3.46279 2.42145 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 24 2.64105 2.59973 3.15970 0.20828 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 25 2.88654 0.19347 3.46279 2.42145 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 26 2.88654 0.19347 3.46279 2.42145 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 27 2.73434 3.61685 0.14258 3.19228 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 28 0.14948 3.27243 2.99326 2.97971 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 29 2.64105 2.59973 3.15970 0.20828 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 30 2.64105 2.59973 3.15970 0.20828 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 31 2.73434 3.61685 0.14258 3.19228 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 32 2.88654 0.19347 3.46279 2.42145 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 33 2.64105 2.59973 3.15970 0.20828 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 34 1.41062 2.06496 2.32674 0.63192 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 35 0.54954 2.50455 1.50366 2.13066 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.20564 3.94446 1.79269 1.46634 0.26236 1.09861 0.40547 36 2.34854 2.35799 2.85346 0.28470 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04647 3.78529 3.78529 1.46634 0.26236 2.36086 0.09909 37 1.87982 0.87367 2.42706 1.07391 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.04647 3.78529 3.78529 1.46634 0.26236 2.36086 0.09909 38 1.64352 1.00998 1.45164 1.56882 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.04647 3.78529 3.78529 1.46634 0.26236 0.20909 1.66771 39 0.70142 1.61317 1.74568 2.03763 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 40 0.94087 2.70565 0.77010 2.52678 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 41 1.38283 2.50347 0.55845 2.35138 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 42 2.69403 0.59980 2.46918 1.20792 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 43 3.22184 0.23312 3.00474 2.13278 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 44 2.60293 3.26935 0.16555 3.20675 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 45 3.22226 0.23308 3.00494 2.13285 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 46 3.22231 0.23307 3.00496 2.13286 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 47 2.59314 0.43267 2.38894 1.68894 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 48 0.53111 2.51481 1.54187 2.14399 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 49 2.04222 1.46078 2.56995 0.57685 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 50 0.98110 2.03216 2.17784 0.96558 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 51 1.78513 1.73834 0.67775 1.90611 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.20564 1.79269 3.94446 0.21825 1.62925 1.09861 0.40547 52 2.64105 2.59973 3.15970 0.20828 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 53 1.97384 1.05560 2.52293 0.83732 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 54 1.97717 0.98705 2.53070 0.89340 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 55 0.14948 3.27243 2.99326 2.97971 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 56 2.73434 3.61685 0.14258 3.19228 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 57 1.95755 2.55760 0.77205 1.14181 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 58 2.40847 3.17116 0.20156 2.98302 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 59 2.40820 3.17079 0.20164 2.98257 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 60 3.39981 0.19646 3.10263 2.30205 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 61 2.40676 3.16881 0.20205 2.98020 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 62 1.93774 2.62937 0.35942 2.45612 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 63 2.57204 1.04265 2.30711 0.75172 65 u - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 64 2.72160 1.71689 2.49725 0.39706 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 65 2.24737 1.96868 1.93163 0.49467 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.01994 3.92491 * 1.46634 0.26236 0.00000 * //