# STOCKHOLM 1.0
#=GF ID NsiR4
#=GF AC RF02677
#=GF DE Nitrogen stress-induced RNA 4
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 40.0
#=GF NC 39.9
#=GF TC 40.4
#=GF SE Argasinska J
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0010608; posttranscriptional regulation of gene expression;
#=GF RN [1]
#=GF RM 26494284
#=GF RT The sRNA NsiR4 is involved in nitrogen assimilation control in
#=GF RT cyanobacteria by targeting glutamine synthetase inactivating factor IF7.
#=GF RA Klahn S, Schaal C, Georg J, Baumgartner D, Knippen G, Hagemann M,
#=GF RA Muro-Pastor AM, Hess WR
#=GF RL Proc Natl Acad Sci U S A. 2015;112:E6243-E6252.
#=GF CC Former name SyR12, is a cyanobacterial non-coding RNA which plays role in
#=GF CC the regulation of Glutamine synthetase (GS), a key enzyme in biological
#=GF CC nitrogen assimilation. NsiR4 interacts with the 5'UTR of the mRNA of the
#=GF CC GS inactivating factor IF7 (gifA mRNA) and reduces its expression. NsiR4
#=GF CC expression is under positive control of the nitrogen control transcription
#=GF CC factor (NtcA). NsR4 is a first example of an sRNA controlling the
#=GF CC assimilation of a micronutrient.
#=GF WK NsiR4_small_RNA
#=GF SQ 4

CP000806.1/666566-666631   AAGACAUAAAGUCAAUUAUCACCCUCCGAUUGCUUAUUGCAACCGCCCACAC-UUCAGUGGCGGUUU
BA000022.2/1289326-1289264 AAGACAUAAAGUCAA-UAUCACCCUCCGAUUGCUAG---AGGUCGCCCAUUGCUUCAGUGGCGGCUU
CP002198.1/2006173-2006109 AAGACAUAAAGUCAA-UAUCACCCUCCGAUUGCUUAUCCAAGCCGCCCGUUG-UCUAGGGGCGGUUU
CP001291.1/4248692-4248628 AAGACAUAAAGUCAA-UAUCACCCUCCGAUUGCUUAUCCAGGCCGCCCAUAG-UCUAGGGGCGGUUU
#=GC SS_cons               ::<<<_____>>>::.:::::::::::::::::::::::<<<<<<<<<____._____>>>>>>>>>
#=GC RF                    AAGACAUAAAGUCAA.UAUCACCCUCCGAUUGCUUAUccaagCCGCCcAUug.UuuAGgGGCGGcuu
//
