# STOCKHOLM 1.0
#=GF ID Ysr35
#=GF AC RF02671
#=GF DE Yersinia sRNA 35
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 428.0
#=GF NC 84.8
#=GF TC 428.3
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 23577771
#=GF RT Counting small RNA in pathogenic bacteria.
#=GF RA Shepherd DP, Li N, Micheva-Viteva SN, Munsky B, Hong-Geller E, Werner JH
#=GF RL Anal Chem. 2013;85:4938-4943.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 3

BX936398.1/1496219-1496557 UAGCGCGUGAGCUAAGGGAUCAACAGGCCGAUUUUUCAAACCGCGAGCUGAAUUUUCAAGCACUGACUUGUGCCAUCGCUCAGUAUACAAACACAAUAUAUAGUGGGUGGGUGUUGGACAGAUAACAAGAUAGUGAGUAUUGAGGCUUUUGGCAAGUGAACAAAACGGGAUAAUUGUGUGGAUAACUUGGGGGUUAAUUG
CP000720.1/3126860-3126522 UUGCGCGUGAGCUAAGGGAUCAACAGGCCGAUUUUUCAAACCGCGAGCUGAAUUUUCAAGCACUGACUUGUGCCAUCGCUCAGUAUACAAACACAAUAUAUAGUGGGUGGGUGUUGGACAGAUAACAAGAUAGUGAGUAUUGAGGCUUUUAGCAAGUGAACAAAACGGGAUAAUUGUGUGGAUAACUUGGGGGUUAAUUG
AL590842.1/1369272-1369610 UAGCGCGUGAGCUAAGGGAUCAACAGGCCGAUUUUUCAAACCGCGAGCUGAAUUUUCAAGCACUGAUUUGUGCCAUCGCUCAGUAUACAAACACAAUAUAUAGUGGGUGGGUGUUGGACAGAUAACAAGAUAGUGAGUAUUGAGGCUUUUGGCAAGUGAACAAAACGGGAUAAUUGUGUGGAUAACUUGGGGGUUAAUUG
#=GC SS_cons               :((((-((((((-----(((((((-----((((((-----(((((((,<<<____>>>,<<<<______>>>>,,<<<<<<<-<<<<___________>>>>->>>>>>>,<<<<<______>>>>>,,,<<<<<<<<-<<-<<-----<<<<-<<<---------<<-<<--<<<<<----<<<<<____>>>>>----
#=GC RF                    UaGCGCGcgagCUAAGGGauCaaCAGGCCGauuuuUCAAACCGCgagCuGaAUUUuCaAGCaCUGAcUUGuGCCAcCgCcCaGuauaCAAACACAAUAuauaGuGgGcGgGuGuugGACAGAcaaCaAGAuaGuGaGuAccGaGGCUUUugGCAaGcGAACAAAACGGGauAAucGugUGGAuaaCcUGGGgGuuaAUUG

BX936398.1/1496219-1496557 UUACGAAUGCCUUAUAAGCUGCGCCAUUACUGGGACUCACUACUUAUCCUUCUGGGGGAUAAGAUUUUGCGGAAAAUCUUAAAAGUUUGAUCGUUUGCCGCUUUAUUAAACAUUCUAAAAGAACCCUGUAAUUUAUCGC
CP000720.1/3126860-3126522 UUACGAAUGCCUUAUAAGCUGCGCCAUUACUGGGACUCACUACUUAUCCUUCUGGGGGAUAAGAUUUUGCGGAAAAUCUUAAAAGUUUGAUCGUUUGCCGCUUUAUUAAACAUUCUAAAAGGACCCUGUAAUUUAUCGC
AL590842.1/1369272-1369610 UUACGAAUGCCUUAUAAGCUGCGCCAUUACUGGGACUCACUACUUAUCCUUCUGGGGGAUAAGAUUUUGCGGAAAAUCUUAAAAGUUUGAUCGUUUGCCGCUUUAUUAAACAUUCUAAAAGGACCCUGUAAUUUAUCGC
#=GC SS_cons               ->>>>>>>->>------>>>-->>>>--->>->>>>>>>>>><<<<<<<<<___>>>>>>>>>,,)))))))))))))------)-)))))))))))))))):::::::::::::::::::::::::::::::::::::
#=GC RF                    UcaCgaauGCCUUAUAAgCuGCGCcaUUACuGggaCuCaCuaCuuauCCccCUGggGGauaaGAUcucGCGGaaaauCUUAAAAGUuuGauCGcucgCCGCuUUAUUAAACAUUCUAAAAGgACCCUGUAAUUUAUCGC
//
