# STOCKHOLM 1.0
#=GF ID PsiU2-38.40.42
#=GF AC RF02667
#=GF DE Drosophila small cajal body-specific RNA PsiU2-38.40.4
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 88.0
#=GF NC 78.9
#=GF TC 88.4
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; snRNA; snoRNA; scaRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0015030; Cajal body;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0002095; scaRNA;
#=GF RN [1]
#=GF RM 24149844
#=GF RT Novel small Cajal-body-specific RNAs identified in Drosophila: probing
#=GF RT guide RNA function.
#=GF RA Deryusheva S, Gall JG
#=GF RL RNA. 2013;19:1802-1814.
#=GF CC Pseudouridylation guide activity for U2 snRNA
#=GF WK Small_Cajal_body-specific_RNA
#=GF SQ 3

JN409597.1/1-137             CAAGCAGCAACAAGAAAGUGCUUAGGCUUAAAUGCGUUUACCUAAGCGCUGAUACAAUGCUGCCAGAACAAUUUUAAAGCCAAGAACAGUUUAGUUUAGAGUAGUUUAUAAACUGAUCUACACGUGGCCUAACAUAU
AFPP01033382.1/28875-29010   AUGGCAGCAACAAGAAAGUGCUUAGG-UUGAUUGAAUUUAUUUAAGCGCUGAUACAAUGCUGCCAGAACAAUUUAAAAGCCAAGAACAGUUCAGUUUAAUGGAGUUUAUAAACUGGUCUACACGUGUCCUUACAUUC
AFFF01008313.1/400637-400772 UUGGCAGCAACAAGAAAGUGCUUGAG-UUAAUUGAGUUUAUUUAAGCGCUGAUACAAUGCUGCCAGAAGAAUUUCAAUGCCAAGAACAGUUCAGUUUGAUUCAGUUUACAAACUGGUCUACACGUGGCCAAACAUUC
#=GC SS_cons                 :::<<<<<<-------<<<<<<<<<<.-<<<<____>>>>>>>>>>>>>>------->>>>>>:::::::::::::::<<<<-----<<-<<<<<<<<__________>>>>>>>>->>----->>>>:::::::::
#=GC RF                      uugGCaGCaACAAGAAaGuGCuuagg.UuaaaUGaguuuaccuaaGCgCuGAUACAAuGCuGCCAGAAcAAUUUuAAaGcCaAGAACaGUccaGuuugauguAGUUUAcaaaCuggUCuACACGuGgCCuaACAUuc
//
