# STOCKHOLM 1.0
#=GF ID PsiU1-6
#=GF AC RF02665
#=GF DE Drosophila small cajal body-specific RNA PsiU1-6
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 72.0
#=GF NC 60.3
#=GF TC 72.4
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; snRNA; snoRNA; scaRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0015030; Cajal body;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0002095; scaRNA;
#=GF RN [1]
#=GF RM 24149844
#=GF RT Novel small Cajal-body-specific RNAs identified in Drosophila: probing
#=GF RT guide RNA function.
#=GF RA Deryusheva S, Gall JG
#=GF RL RNA. 2013;19:1802-1814.
#=GF CC Pseudouridylation guide activity for U1 snRNA and 28s rRNA
#=GF WK Small_Cajal_body-specific_RNA
#=GF SQ 3

AE014297.2/5539329-5539487   CAAGCGUUGGGAAAGCGUCGACACUGUAAACAGUGAGUGUAGACACUGACCUCAUAACGCUAGAUUAACUUAAAACUGAGACGUUAACGUUUUAGUUGAGCAAACAGGGCCGCAAAGAUUUAAGUCUUUCUUUGAUCGGUAGUAAGCCGCUCACACAAA
AAGH01021807.1/1648-1806     UAAGCGUUGGGAAAGCGUCGACACUGUAAACAGUGAGUGUAGACACUGACCUCAUAACGCUAGAUUAACUUAAAACUGAGACGUUAACGUUUUAGUUGAGCAAACAGGGCCGCAAAGAUUUAAGUCUAUCUUUGAUCGGUAGUAAGCCGCUCGCACAAA
AAEU02000008.1/511385-511543 UAAGCGUUGGGUAAGCGUCGACACUGUAAACAGUGAGUGUAGACACUGACCUUUCAGCGCUAGAUUAAUUUAAAACUGACACGUUAACGUUUUAGUUGAGCAAACAGGGCCGCAAAGAUUUAAGCUUAUCUUUGAACGGUAGUAAGCCGCUCGCACAAA
#=GC SS_cons                 <-<<<<<<<<<--<<-<<<-<<<<<__________>>>>>->>>->>-->>>--->>>>>>->:::::::::::<<<<<<<<<____>>>>>>>>><<<<<-------<<<<<<<<<<__________>>>>>>-->>>>-------->>>>>::::::
#=GC RF                      cAaGCGuugGGaAaGCGuCGaCaCuGUAAACAGUGaGuGuAGaCACuGACCccauaaCGCuAgAUUAAcUUAAAaCugagaCGUUAACGucucaGucGaGCAAACAGGgCCGCaaaGaUUUAAGucUauCuuuGAuCGGcAGUAAGCCGCuCgCACAAA
//
