{"rfam": {"acc": "RF02661", "id": "icaR_5p_UTR", "description": "icaR 5' UTR", "comment": "The 3'UTR of icaR mRNA (repressor of the main expolysaccharidic compound of the bacteria biofilm matrix) binding to the 5' UTR can interfere with the translation initiation complex and generate a double stranded substrate for RNaseIII. Mozos at al. showed that the interaction was between UCCCCUG motif in the 3'UTR and the Shine-Dalagarno region at the 5'UTR. Deletion of the motif resulted in IcaR repressor accumulation and inhibition of biofilm development.", "curation": {"author": "Argasinska J", "seed_source": "Argasinska J", "num_seed": 2, "num_full": 1, "num_species": 3, "type": "Cis-reg;", "structure_source": "Predicted; RNAfold;"}, "cm": {"build_command": "cmbuild -F CM SEED", "calibrate_command": "cmcalibrate --mpi CM", "search_command": "cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB", "cutoffs": {"gathering": 88.0, "trusted": 106.8, "noise": 47.3}}, "release": {"date": "2026-01-16", "number": "15.1"}, "clan": {"acc": null, "id": null}}}