# STOCKHOLM 1.0
#=GF ID StyR-3
#=GF AC RF02652
#=GF DE Salmonella enterica Typhi npcRNA 3
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 59.0
#=GF NC 45.8
#=GF TC 139.9
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 25774907
#=GF RT Non-protein coding RNA genes as the novel diagnostic markers for the
#=GF RT discrimination of Salmonella species using PCR.
#=GF RA Nithya R, Ahmed SA, Hoe CH, Gopinath SC, Citartan M, Chinni SV, Lee LP,
#=GF RA Rozhdestvensky TS, Tang TH
#=GF RL PLoS One. 2015;10:e0118668.
#=GF RN [2]
#=GF RM 20460466
#=GF RT Experimental identification and characterization of 97 novel npcRNA
#=GF RT candidates in Salmonella enterica serovar Typhi.
#=GF RA Chinni SV, Raabe CA, Zakaria R, Randau G, Hoe CH, Zemann A, Brosius J,
#=GF RA Tang TH, Rozhdestvensky TS
#=GF RL Nucleic Acids Res. 2010;38:5893-5908.
#=GF CC Promoter associated sRNA gene that is co-transcribed with the ramA gene
#=GF CC (mediates multidrug resistance) and overlaps with the DNA binding site of
#=GF CC the RamR repressor.
#=GF WK Salmonella_enterica
#=GF SQ 5

FJ746361.1/1-144         UUACUCACUCAUAAUCAAGGGCUGCCGCAUGAAGUGGUAGAAAAGCAUAUUGCAGGCCAUGCGAUAAGCCGUCUCACAAUUUGUGUGGUUAUUACUAUGCUUAUUGCUGUUGCCGUAAAUGUGCGGUGCGGGAGCCGCUGACGA
FR775195.1/117667-117810 UUACUCACUCAUAAUCAAGGGCUGCCGCAUGAAGUGGUAGAAAAGCAUAUUGCAGGCCAUGCGAUAAGCUGUCUCACAAUUUGUGUGGUUAUUACUAUGCUUAUUGCUGUUGCCGUAAAUGUGCGGUGCGGGAGCCGCUGACGA
AFCN01000333.1/4643-4786 UUACUCACUCAUAAUCAAGGGCUGCCGCAUGAAGUGGUAGAAAAGCAUAUUGCAGGCCAUGCGAUAAGCCAUCUCACAAUUUGUGUGGUUAUUACUAUGCUUAUUGCUGUUGCCGUAAAUGUGCGGUGCGGGAGCCGCUGACGA
CP001113.1/643257-643400 UUACUCACUCACAAUCAAGGGCUGCCGCAUGAAGUGGUAGAAAAGCAUAUUGCAGGCCAUGCGAUAAGCUGUCUCACAAUUUGUGUGGUUAUUACUAUGCUUAUUGCUGUUGCCGUAAAUGUGCGGUGCGGGAGCCGCUGACGA
AFCU01000310.1/357-500   UUACUCACUCAUAAUCAAGGGCUGCCGCAUGAAGUGGUAGAAAAGCAUAUUGCAGGCCAUGCGAUAAGCUUUCUCACAAUUUGUGUGGUUAUUACUAUGCUUAUUGCUGUUGCCGUAAAUGUGCGGUGCGGGAGCCGCUGACGA
#=GC SS_cons             ::::::::::::::(((--((((-((((((--------------(((((((---(((---(((((((((,,,,,<<<<___>>>><<<<____>>>>,)))))))))----)))---)))))))-))))))-))))--))):::
#=GC RF                  UUACUCACUCAuAAuCaAGGGCuGCCGCacGAAGUGGUAGAAAAGCacauuGCAGGCCAUGCgauaaGCugUCUCaCaAUUuGuGugGuUAUUaCcaUGCuuaucGCUGUUGCCGUAaauguGCGguGCGGGaGCCGCuGaCGA
//
