INFERNAL1/a [1.1.5 | Sep 2023] NAME Spy490483c ACC RF02641 DESC S. pyogenes small RNA Spy490483c STATES 303 NODES 77 CLEN 98 W 116 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 17:44:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02641/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 0.758789 CKSUM 975772320 NULL 0.000 0.000 0.000 0.000 GA 65.00 TC 65.80 NC 41.90 EFP7GF -5.1704 0.71863 ECMLC 0.59012 -9.01952 0.93319 1600000 426497 0.002814 ECMGC 0.40373 -13.25638 -2.78028 1600000 27475 0.014559 ECMLI 0.53476 -6.35342 3.61072 1600000 247334 0.004852 ECMGI 0.46189 -7.11861 2.00272 1600000 27026 0.014801 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 116 137 -6.365 -6.572 -0.080 -4.986 IL 1 1 2 1 4 12 49 120 141 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 12 48 119 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 11 47 116 137 -7.432 -0.030 -6.086 -0.490 -1.498 1.260 -0.892 D 4 2 3 5 3 8 45 115 136 -6.174 -1.687 -0.566 IL 5 5 3 5 3 11 48 118 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 10 46 115 136 -7.864 -0.026 -6.181 -0.582 -0.761 -1.246 1.214 D 7 5 3 8 3 8 45 114 135 -5.620 -0.734 -1.403 IL 8 8 3 8 3 10 47 116 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 99 - A - - MR 9 8 3 11 3 9 45 114 135 -7.864 -0.026 -6.181 1.360 -1.352 -1.081 -0.814 D 10 8 3 11 3 7 44 113 134 -6.390 -1.568 -0.620 IR 11 11 3 11 3 9 46 115 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 98 - G - - MR 12 11 3 14 2 8 44 113 134 -7.689 -0.007 -0.490 -1.498 1.260 -0.892 D 13 11 3 14 2 7 43 112 133 -4.432 -0.068 IR 14 14 3 14 2 8 45 114 135 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 129 7 43 112 133 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 2 53 73 -0.054 -6.568 -5.976 -6.616 [ MATP 7 ] 3 40 u a - - MP 17 16 1 21 6 2 5 53 73 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 18 16 1 21 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 1 21 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 2 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 2 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 39 C G - - MP 23 22 6 27 6 2 5 51 71 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.604 -3.384 -3.437 0.272 -2.413 -3.965 3.083 -3.114 -3.470 0.735 -3.815 -1.314 1.174 -3.723 -0.111 -2.347 ML 24 22 6 27 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 2 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 2 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 38 u a - - MP 29 28 6 33 6 2 4 49 69 -4.908 -8.851 -0.071 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 30 28 6 33 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 2 49 68 -2.922 -3.184 -0.563 -4.840 -5.616 -5.276 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 37 C G - - MP 35 34 6 39 4 2 2 47 67 -6.339 -7.584 -0.118 -4.038 -3.604 -3.384 -3.437 0.272 -2.413 -3.965 3.083 -3.114 -3.470 0.735 -3.815 -1.314 1.174 -3.723 -0.111 -2.347 ML 36 34 6 39 4 1 1 46 66 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 4 1 1 46 66 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 38 34 6 39 4 0 0 44 64 -12.737 -14.007 -2.036 -0.404 IL 39 39 5 39 4 1 1 46 66 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 40 40 6 40 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 36 - A - - MR 41 40 6 43 5 1 1 45 65 -6.641 -0.054 -6.456 -6.668 -7.560 1.360 -1.352 -1.081 -0.814 D 42 40 6 43 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 43 43 3 43 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 35 a u - - MP 44 43 3 48 6 2 2 44 64 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 45 43 3 48 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 3 48 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 3 48 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 34 G C - - MP 50 49 6 54 4 2 2 42 62 -6.365 -6.572 -0.080 -4.986 -3.739 -2.628 -3.793 0.826 -3.819 -4.252 0.592 -3.923 -3.594 3.255 -4.012 -0.313 0.166 -3.792 -1.403 -2.685 ML 51 49 6 54 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 53 49 6 54 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 54 54 5 54 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 55 55 6 55 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - A - - - ML 56 55 6 58 5 1 1 39 59 -6.641 -0.054 -6.456 -6.668 -7.560 1.360 -1.352 -1.081 -0.814 D 57 55 6 58 5 0 0 38 58 -4.959 -0.803 -4.221 -2.596 -2.508 IL 58 58 3 58 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 33 c g - - MP 59 58 3 63 4 2 2 38 58 -6.365 -6.572 -0.080 -4.986 -3.196 -3.047 -3.091 0.525 -2.178 -3.668 2.078 -2.842 -3.126 0.918 -3.511 -1.062 1.390 -3.351 2.006 -2.042 ML 60 58 3 63 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 61 58 3 63 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 62 58 3 63 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 63 63 5 63 4 1 1 40 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 64 64 6 64 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - G - - - ML 65 64 6 67 3 1 1 36 55 -7.864 -0.026 -6.181 -0.490 -1.498 1.260 -0.892 D 66 64 6 67 3 0 0 35 54 -5.620 -0.734 -1.403 IL 67 67 3 67 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 32 - G - - MR 68 67 3 70 5 1 1 35 54 -6.641 -0.054 -6.456 -6.668 -7.560 -0.490 -1.498 1.260 -0.892 D 69 67 3 70 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 70 70 3 70 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 31 u a - - MP 71 70 3 75 6 2 2 34 53 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 72 70 3 75 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 3 75 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 3 75 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 30 G C - - MP 77 76 6 81 4 2 2 32 51 -6.365 -6.572 -0.080 -4.986 -3.739 -2.628 -3.793 0.826 -3.819 -4.252 0.592 -3.923 -3.594 3.255 -4.012 -0.313 0.166 -3.792 -1.403 -2.685 ML 78 76 6 81 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - A - - - ML 83 82 6 85 3 1 1 29 48 -7.864 -0.026 -6.181 1.360 -1.352 -1.081 -0.814 D 84 82 6 85 3 0 0 28 46 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 29 - G - - MR 86 85 3 88 5 1 1 28 47 -6.641 -0.054 -6.456 -6.668 -7.560 -0.490 -1.498 1.260 -0.892 D 87 85 3 88 5 0 0 27 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 88 88 3 88 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 28 u a - - MP 89 88 3 93 6 2 2 27 46 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 90 88 3 93 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 27 u a - - MP 95 94 6 99 6 2 2 25 44 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 96 94 6 99 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 26 a u - - MP 101 100 6 105 6 2 2 23 42 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 102 100 6 105 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 25 C G - - MP 107 106 6 111 6 2 2 21 40 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.604 -3.384 -3.437 0.272 -2.413 -3.965 3.083 -3.114 -3.470 0.735 -3.815 -1.314 1.174 -3.723 -0.111 -2.347 ML 108 106 6 111 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 24 c g - - MP 113 112 6 117 4 2 2 19 38 -6.365 -6.572 -0.080 -4.986 -3.206 -3.031 -3.119 0.601 -2.231 -3.720 2.352 -2.884 -3.154 1.045 -3.553 -1.009 2.156 -3.347 0.071 -2.047 ML 114 112 6 117 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 117 117 5 117 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 119 118 6 121 3 1 1 15 34 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 120 118 6 121 3 0 0 15 33 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - C - - - ML 122 121 3 124 3 1 1 13 32 -7.432 -0.030 -6.086 -0.586 1.068 -1.338 -0.249 D 123 121 3 124 3 0 0 13 32 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - A - - - ML 125 124 3 127 2 1 1 1 1 * 0.000 1.360 -1.352 -1.081 -0.814 D 126 124 3 127 2 0 0 0 0 * 0.000 IL 127 127 3 127 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 128 127 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 129 15 1 130 3 0 12 74 94 -7.432 -0.030 -6.086 IL 130 130 2 130 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 41 - C - - - ML 131 130 2 133 3 1 12 74 94 -7.432 -0.030 -6.086 -0.586 1.068 -1.338 -0.249 D 132 130 2 133 3 0 6 72 93 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 11 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 42 - A - - - ML 134 133 3 136 3 1 11 73 93 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 135 133 3 136 3 0 6 71 91 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 10 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 43 - U - - - ML 137 136 3 139 3 1 10 72 92 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 138 136 3 139 3 0 5 70 90 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 10 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - A - - - ML 140 139 3 142 3 1 10 71 91 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 141 139 3 142 3 0 4 69 89 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 9 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - A - - - ML 143 142 3 145 3 1 9 70 90 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 144 142 3 145 3 0 3 68 88 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 8 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - C - - - ML 146 145 3 148 3 1 8 68 88 -7.432 -0.030 -6.086 -0.586 1.068 -1.338 -0.249 D 147 145 3 148 3 0 3 67 87 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 7 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - A - - - ML 149 148 3 151 3 1 8 67 87 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 150 148 3 151 3 0 2 66 86 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 7 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - A - - - ML 152 151 3 154 3 1 7 66 86 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 153 151 3 154 3 0 2 65 85 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 6 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - U - - - ML 155 154 3 157 3 1 7 65 85 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 156 154 3 157 3 0 1 64 84 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 5 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - C - - - ML 158 157 3 160 3 1 6 64 84 -7.432 -0.030 -6.086 -0.586 1.068 -1.338 -0.249 D 159 157 3 160 3 0 1 63 83 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 5 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - A - - - ML 161 160 3 163 5 1 6 63 83 -6.641 -0.054 -6.456 -6.668 -7.560 1.360 -1.352 -1.081 -0.814 D 162 160 3 163 5 0 0 62 82 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 3 63 83 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 52 97 G C - - MP 164 163 3 168 6 2 7 62 82 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.739 -2.628 -3.793 0.826 -3.819 -4.252 0.592 -3.923 -3.594 3.255 -4.012 -0.313 0.166 -3.792 -1.403 -2.685 ML 165 163 3 168 6 1 2 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 3 168 6 1 2 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 3 168 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 3 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 3 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 53 96 a u - - MP 170 169 6 174 6 2 7 60 80 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 171 169 6 174 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 3 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 3 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 54 95 a u - - MP 176 175 6 180 6 2 6 58 78 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 177 175 6 180 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 2 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 55 94 u a - - MP 182 181 6 186 6 2 4 56 76 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 183 181 6 186 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 2 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 56 93 a u - - MP 188 187 6 192 4 2 3 54 74 -6.365 -6.572 -0.080 -4.986 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 189 187 6 192 4 1 1 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 IL 192 192 5 192 4 1 2 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - U - - - ML 194 193 6 196 3 1 2 52 71 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 195 193 6 196 3 0 0 50 70 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 58 - U - - - ML 197 196 3 199 3 1 2 51 70 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 198 196 3 199 3 0 0 49 69 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 59 - A - - - ML 200 199 3 202 3 1 1 49 69 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 201 199 3 202 3 0 0 48 68 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 60 - A - - - ML 203 202 3 205 3 1 1 48 68 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 204 202 3 205 3 0 0 47 67 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 61 - A - - - ML 206 205 3 208 3 1 1 47 67 -7.432 -0.030 -6.086 1.360 -1.352 -1.081 -0.814 D 207 205 3 208 3 0 0 46 65 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 62 - G - - - ML 209 208 3 211 3 1 1 46 66 -7.432 -0.030 -6.086 -0.490 -1.498 1.260 -0.892 D 210 208 3 211 3 0 0 45 64 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 63 - G - - - ML 212 211 3 214 3 1 1 45 64 -7.432 -0.030 -6.086 -0.490 -1.498 1.260 -0.892 D 213 211 3 214 3 0 0 44 63 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 64 - A - - - ML 215 214 3 217 3 1 1 44 63 -7.864 -0.026 -6.181 1.360 -1.352 -1.081 -0.814 D 216 214 3 217 3 0 0 43 62 -5.620 -0.734 -1.403 IL 217 217 3 217 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 92 - C - - MR 218 217 3 220 3 1 1 43 62 -7.864 -0.026 -6.181 -0.586 1.068 -1.338 -0.249 D 219 217 3 220 3 0 0 41 61 -6.390 -1.568 -0.620 IR 220 220 3 220 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 57 ] - 91 - C - - MR 221 220 3 223 3 1 1 42 61 -7.864 -0.026 -6.181 -0.586 1.068 -1.338 -0.249 D 222 220 3 223 3 0 0 40 60 -6.390 -1.568 -0.620 IR 223 223 3 223 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 90 - A - - MR 224 223 3 226 3 1 1 41 60 -7.864 -0.026 -6.181 1.360 -1.352 -1.081 -0.814 D 225 223 3 226 3 0 0 39 59 -6.390 -1.568 -0.620 IR 226 226 3 226 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 59 ] - 89 - G - - MR 227 226 3 229 3 1 1 40 59 -7.864 -0.026 -6.181 -0.490 -1.498 1.260 -0.892 D 228 226 3 229 3 0 0 38 58 -6.390 -1.568 -0.620 IR 229 229 3 229 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 60 ] - 88 - G - - MR 230 229 3 232 3 1 1 39 58 -7.864 -0.026 -6.181 -0.490 -1.498 1.260 -0.892 D 231 229 3 232 3 0 0 37 57 -6.390 -1.568 -0.620 IR 232 232 3 232 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 61 ] - 87 - G - - MR 233 232 3 235 5 1 1 38 57 -6.641 -0.054 -6.456 -6.668 -7.560 -0.490 -1.498 1.260 -0.892 D 234 232 3 235 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 235 235 3 235 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 65 86 u a - - MP 236 235 3 240 6 2 2 37 56 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 237 235 3 240 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 238 235 3 240 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 239 235 3 240 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 240 240 5 240 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 241 241 6 241 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 66 85 G C - - MP 242 241 6 246 6 2 2 35 54 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.739 -2.628 -3.793 0.826 -3.819 -4.252 0.592 -3.923 -3.594 3.255 -4.012 -0.313 0.166 -3.792 -1.403 -2.685 ML 243 241 6 246 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 244 241 6 246 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 245 241 6 246 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 246 246 5 246 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 247 247 6 247 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 67 84 c g - - MP 248 247 6 252 4 2 2 33 52 -6.365 -6.572 -0.080 -4.986 -3.196 -3.047 -3.091 0.525 -2.178 -3.668 2.078 -2.842 -3.126 0.918 -3.511 -1.062 1.390 -3.351 2.006 -2.042 ML 249 247 6 252 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 250 247 6 252 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 251 247 6 252 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 252 252 5 252 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 253 253 6 253 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - U - - - ML 254 253 6 256 3 1 1 30 49 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 255 253 6 256 3 0 0 29 48 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - A - - - ML 257 256 3 259 5 1 1 29 48 -6.641 -0.054 -6.456 -6.668 -7.560 1.360 -1.352 -1.081 -0.814 D 258 256 3 259 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 259 259 3 259 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 67 ] 70 83 u a - - MP 260 259 3 264 6 2 2 28 47 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.336 -3.082 -3.253 0.545 -2.409 -3.884 1.891 -3.030 -3.272 1.016 -3.679 -0.989 2.628 -3.504 -0.106 -2.163 ML 261 259 3 264 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 262 259 3 264 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 263 259 3 264 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 264 264 5 264 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 265 265 6 265 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 68 ] 71 82 C G - - MP 266 265 6 270 6 2 2 26 45 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.604 -3.384 -3.437 0.272 -2.413 -3.965 3.083 -3.114 -3.470 0.735 -3.815 -1.314 1.174 -3.723 -0.111 -2.347 ML 267 265 6 270 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 268 265 6 270 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 269 265 6 270 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 270 270 5 270 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 271 271 6 271 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 69 ] 72 81 a u - - MP 272 271 6 276 6 2 2 24 43 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 273 271 6 276 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 274 271 6 276 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 275 271 6 276 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 276 276 5 276 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 277 277 6 277 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 70 ] 73 80 C G - - MP 278 277 6 282 6 2 2 22 41 -8.912 -8.851 -0.024 -7.628 -7.907 -8.302 -3.604 -3.384 -3.437 0.272 -2.413 -3.965 3.083 -3.114 -3.470 0.735 -3.815 -1.314 1.174 -3.723 -0.111 -2.347 ML 279 277 6 282 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 280 277 6 282 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 281 277 6 282 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 282 282 5 282 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 283 283 6 283 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 71 ] 74 79 a u - - MP 284 283 6 288 4 2 2 20 39 -6.365 -6.572 -0.080 -4.986 -3.129 -2.351 -3.178 2.553 -3.168 -4.209 1.106 -3.239 -3.107 1.842 -3.615 0.038 0.670 -3.514 -0.848 -2.060 ML 285 283 6 288 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 286 283 6 288 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 287 283 6 288 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 288 288 5 288 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 289 289 6 289 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 75 - G - - - ML 290 289 6 292 3 1 1 17 35 -7.432 -0.030 -6.086 -0.490 -1.498 1.260 -0.892 D 291 289 6 292 3 0 0 16 35 -6.174 -1.687 -0.566 IL 292 292 3 292 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 76 - U - - - ML 293 292 3 295 3 1 1 15 34 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 294 292 3 295 3 0 0 15 33 -6.174 -1.687 -0.566 IL 295 295 3 295 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 77 - U - - - ML 296 295 3 298 3 1 1 13 32 -7.432 -0.030 -6.086 -0.582 -0.761 -1.246 1.214 D 297 295 3 298 3 0 0 13 32 -6.174 -1.687 -0.566 IL 298 298 3 298 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 75 ] 78 - U - - - ML 299 298 3 301 2 1 1 1 1 * 0.000 -0.582 -0.761 -1.246 1.214 D 300 298 3 301 2 0 0 0 0 * 0.000 IL 301 301 3 301 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 302 301 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Spy490483c ACC RF02641 DESC S. pyogenes small RNA Spy490483c LENG 98 MAXL 199 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 17:44:17 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02641/CM NSEQ 3 EFFN 1.333008 CKSUM 975772320 STATS LOCAL MSV -8.9578 0.71863 STATS LOCAL VITERBI -10.2112 0.71863 STATS LOCAL FORWARD -3.1716 0.71863 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26974 1.58208 1.34373 1.37565 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 0.00000 * 1 2.11800 2.90058 0.30046 2.47390 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 2 2.11119 2.16467 2.60071 0.37121 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 3 2.44292 1.52890 2.11333 0.55254 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 4 2.67243 0.41706 2.36422 1.72648 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 5 2.43963 1.52904 2.11234 0.55320 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.21284 1.80004 3.63362 0.29380 1.36816 1.09861 0.40547 6 2.66267 0.41895 2.36067 1.72514 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 7 0.64613 2.17609 1.41357 2.12719 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 8 2.23403 2.64776 0.29071 2.59882 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 9 0.28567 2.69079 2.46967 2.34289 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 10 2.44383 1.34272 2.16217 0.62183 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 11 2.11800 2.90058 0.30046 2.47390 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 12 2.43290 1.52933 2.11032 0.55454 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 13 2.24021 2.65298 0.28855 2.60677 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 14 0.28567 2.69079 2.46967 2.34289 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 15 2.43335 1.52931 2.11046 0.55445 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 16 2.43631 1.52918 2.11134 0.55386 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 17 0.64346 2.18088 1.41288 2.13585 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 18 2.66792 0.41793 2.36258 1.72586 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 19 2.27798 1.03873 1.96972 0.90607 20 u - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 20 2.11119 2.16467 2.60071 0.37121 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 21 2.19310 0.40035 2.74525 1.87007 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 22 0.28567 2.69079 2.46967 2.34289 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 23 1.04910 2.13052 0.91267 2.04391 24 g - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 24 1.99819 2.52756 0.36236 2.42432 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 25 2.37034 1.64837 1.99887 0.54697 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 26 0.63226 2.28542 1.36518 2.19333 27 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 27 0.63213 2.28571 1.36513 2.19379 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 28 2.11800 2.90058 0.30046 2.47390 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 29 2.83503 0.33444 2.48357 1.95124 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 30 0.63215 2.28566 1.36514 2.19371 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 31 2.11800 2.90058 0.30046 2.47390 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 32 1.80166 2.32608 0.46852 2.19491 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 33 2.82822 0.33555 2.48110 1.94991 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 34 2.36717 1.64838 1.99808 0.54767 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 35 0.28567 2.69079 2.46967 2.34289 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 36 1.99521 2.52454 0.36385 2.41997 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 37 0.63292 2.28395 1.36542 2.19101 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 38 1.99561 2.52494 0.36365 2.42055 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 39 0.63390 2.28174 1.36577 2.18754 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 40 2.19310 0.40035 2.74525 1.87007 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 41 0.28567 2.69079 2.46967 2.34289 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 42 2.11119 2.16467 2.60071 0.37121 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 43 0.28567 2.69079 2.46967 2.34289 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 44 0.28567 2.69079 2.46967 2.34289 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 45 2.19310 0.40035 2.74525 1.87007 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 46 0.28567 2.69079 2.46967 2.34289 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 47 0.28567 2.69079 2.46967 2.34289 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 48 2.11119 2.16467 2.60071 0.37121 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 49 2.19310 0.40035 2.74525 1.87007 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 50 0.28567 2.69079 2.46967 2.34289 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 51 2.24039 2.65313 0.28849 2.60700 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 52 0.64346 2.18088 1.41288 2.13585 53 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 53 0.64342 2.18094 1.41287 2.13596 54 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 54 2.43750 1.52913 2.11170 0.55362 55 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 55 0.64348 2.18084 1.41289 2.13578 56 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 56 2.11119 2.16467 2.60071 0.37121 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 57 2.11119 2.16467 2.60071 0.37121 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 58 0.28567 2.69079 2.46967 2.34289 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 59 0.28567 2.69079 2.46967 2.34289 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 60 0.28567 2.69079 2.46967 2.34289 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 61 2.11800 2.90058 0.30046 2.47390 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 62 2.11800 2.90058 0.30046 2.47390 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 63 0.28567 2.69079 2.46967 2.34289 64 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 64 2.43192 1.52937 2.11002 0.55473 65 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 65 2.23978 2.65262 0.28870 2.60621 66 G - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 66 2.44609 1.34249 2.16292 0.62141 67 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 67 2.11119 2.16467 2.60071 0.37121 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 68 0.28567 2.69079 2.46967 2.34289 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 69 2.43552 1.52922 2.11111 0.55401 70 U - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 70 2.66686 0.41814 2.36220 1.72572 71 C - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 71 0.64348 2.18083 1.41289 2.13576 72 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 72 2.66733 0.41805 2.36237 1.72578 73 C - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 73 0.64352 2.18077 1.41290 2.13566 74 A - - < 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 74 2.11800 2.90058 0.30046 2.47390 75 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 75 2.11119 2.16467 2.60071 0.37121 76 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 76 2.11119 2.16467 2.60071 0.37121 77 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 77 2.11119 2.16467 2.60071 0.37121 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 78 2.36727 1.64838 1.99810 0.54765 79 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 79 1.99662 2.52597 0.36315 2.42203 80 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 80 2.36581 1.64838 1.99773 0.54797 81 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 81 1.99474 2.52407 0.36408 2.41929 82 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 82 0.63422 2.28103 1.36589 2.18642 83 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 83 1.80707 2.33152 0.46485 2.20282 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 84 2.83455 0.33451 2.48339 1.95115 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 85 0.63220 2.28554 1.36516 2.19353 86 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 86 2.11800 2.90058 0.30046 2.47390 87 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 87 2.11800 2.90058 0.30046 2.47390 88 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 88 2.11800 2.90058 0.30046 2.47390 89 G - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 89 0.28567 2.69079 2.46967 2.34289 90 A - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 90 2.19310 0.40035 2.74525 1.87007 91 C - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 91 2.19310 0.40035 2.74525 1.87007 92 C - - - 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 92 2.36769 1.64838 1.99821 0.54755 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 93 0.63285 2.28410 1.36539 2.19126 94 A - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 94 2.36670 1.64838 1.99796 0.54777 95 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 95 2.36490 1.64838 1.99750 0.54817 96 U - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 96 2.81708 0.33739 2.47704 1.94771 97 C - - > 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 97 2.11800 2.90058 0.30046 2.47390 98 G - - : 1.38629 1.38629 1.38629 1.38629 0.05429 3.63362 3.63362 1.46634 0.26236 1.09861 0.40547 98 0.28567 2.69079 2.46967 2.34289 99 A - - : 1.38629 1.38629 1.38629 1.38629 0.02751 3.60684 * 1.46634 0.26236 0.00000 * //