# STOCKHOLM 1.0
#=GF ID Spy490483c
#=GF AC RF02641
#=GF DE S. pyogenes small RNA Spy490483c
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 65.0
#=GF NC 41.9
#=GF TC 65.8
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 23062031
#=GF RT Identification of novel growth phase- and media-dependent small non-coding
#=GF RT RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays.
#=GF RA Patenge N, Billion A, Raasch P, Normann J, Wisniewska-Kucper A, Retey J,
#=GF RA Boisguerin V, Hartsch T, Hain T, Kreikemeyer B
#=GF RL BMC Genomics. 2012;13:550.
#=GF WK Bacterial_small_RNA
#=GF SQ 3

CP000829.1/476503-476600 GUUCU-CAGAUGUGAUUACCUCAGGUAAGCAGGCUAGAGACAUAACAAUCAGAAUAUUAAAGGAUGUUAUCACAGUUUUGUGAGCAGGGACCUAUUCGA
CP003068.1/471078-471175 GUUCU-CAGAUGUGAUUACUUCAAGUAAGCAGGCUAGAGACAUAACAAUCAGAAUAUUAAAGGAUGUUAUCACAGUUUUGUGAGCAGGGACCUAUUCGA
CP000261.1/463691-463789 GUUCUACAGAUGUGAUUACUUCAAGUAAGCAGGCUAGAGACAUAACAAUCAGAAUAUUAAAGGAUGUUAUCACAGUUUUGUGAGCAGGGACCUAUUCGA
#=GC SS_cons             ::<<<.<<<-<-<<-<<<<<___>>>>>->>->>>->>>>:::::::::::<<<<<--------<<<--<<<<<____>>>>>>>>------>>>>>::
#=GC RF                  GUuCu.CaGAcGuGAuuaCcUCAgGuaaGCaGgCuAGaGaCAUAACAAUCAGaauaUUAAAGGAuGcUAuCaCaGUUUuGuGagCaGGGACCuauuCGA
//
