# STOCKHOLM 1.0
#=GF ID MOSES4
#=GF AC RF02640
#=GF DE S. pyogenes small RNA MOSES4
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 54.8
#=GF NC 47.9
#=GF TC 93.5
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 23062031
#=GF RT Identification of novel growth phase- and media-dependent small non-coding
#=GF RT RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays.
#=GF RA Patenge N, Billion A, Raasch P, Normann J, Wisniewska-Kucper A, Retey J,
#=GF RA Boisguerin V, Hartsch T, Hain T, Kreikemeyer B
#=GF RL BMC Genomics. 2012;13:550.
#=GF WK Bacterial_small_RNA
#=GF SQ 3

BA000034.2/1598159-1597984 CGUUUCCUUCCUUAACACUAUCGACUCCAUAAUGACCCAUCAGUCAAACGGUAUAUCUCAAACGACUACGGUUUACUCCAAAUUCAUUGGCUAGUUGAGGCCAAGAAACACCUGAUUUUUUUAAUGCUAAAUUUCUAGCUUAUCUUCAUAGCUUAAUUUCAUACAAAAAAACCCCA
CP000017.1/307383-307557   UGUUUCCUUCCUUAACACUAUCGACUCCAUAAUGACCCAUCAGUCAAACGGUAUAUCUCAAACGACUACGGUUUACUCCAAAUUCAUUGGCUAGUUGAGGCCAAGAAACACCUGAUUUUUU-AAUGCUAAAUUUCUAGCUUAUCUUCAUAGCUUAAUUUCAUACAAAAAAACCCCA
CP000829.1/308505-308680   CGUUUCCUUCCUUAACACUAUCGACUCCAUAAUGACCCAUCAGUCAAACGGUAUAUCUCAAACGACUACGGUUUACUCCAAAUUGAUUGGCUAGUUGAGGCCAAGAAACACCUGAUUUUUUUAAUGCUAAAUUUCUAGCUUAUCUUCAUAGCUUAAUUUCAUACAAAAAAACCCCA
#=GC SS_cons               :(((((---(((((((,,,,,,,,,,,,,,,,<<<<______>>>><<<-<<<--<<______>>->>>->>>,,,,<<<<_____>>>>,,,)))))))----)))))::::::<<<<<<--<<<--<<<<<---<<<<_________>>>>->>>>>>>>-->>>>>>::::::
#=GC RF                    cGuuuCCUUCCuuaaCACUAUCGACUCCAUAAuGaCCCAUCAGuCaaaCGGuaUAuCUCAAACGaCuaCGGuuUACUCCaaAUUcAuuGGCUAGuugaGGCCAAGaaaCACCUGAuuuuuuUAauGCUaaauuUCUaGCuUAUCUUCAUaGCuUaauuuCauACaaaaaaACCCCA
//
