# STOCKHOLM 1.0
#=GF ID AbsR28
#=GF AC RF02606
#=GF DE Acinetobacter sRNA 28
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 50.0
#=GF NC 48.0
#=GF TC 50.6
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 24705412
#=GF RT Identification of novel regulatory small RNAs in Acinetobacter baumannii.
#=GF RA Sharma R, Arya S, Patil SD, Sharma A, Jain PK, Navani NK, Pathania R
#=GF RL PLoS One. 2014;9:e93833.
#=GF CC Three sRNAs: AbsR11, AbsR25 and AbsR28 have been experimentally validated
#=GF CC in the MTCC 1425 (ATCC15308) strain, which is an MDR strain showing
#=GF CC resistance to 12 antibiotics. AbsR25 sRNA could play role in the efflux
#=GF CC pump regulation and drug resistance.
#=GF WK Acinetobacter_baumannii
#=GF SQ 2

CP000521.1/3285873-3286051 AGAUUUUCAACGGCACUUUUUA-AAAAGGAGGACAUCAUGCCAACACUACAAGGUAAAACACAGUAACGAUUUGGCACGAUGUCAGCUCACGGACAAGUGUACAAAUUUAAUUCACUUGUCCGAAUGCUCGAAUUUAAGACCUAGCAUUCGCUAGGUUUUUUUAUGCCUAUUCGGACAAU
ACQB01000061.1/63606-63427 AUAUUUUCAACGGCACUUUUUAAAAAAGGAGGACAUCAUGCCAACACUACAAGGUAAAACACAGUAACGAUUUGGCACGAUGUCAGCUCACGGACAAGUGUACAAAUUUAAUUCACUUGUCCGAAUGCUUGAAUUUAAGACCUAGCAUUCGCUAGGUUUUUUUAUUCCUAUUCGGACAAU
#=GC SS_cons               :((--((((--((((<<<<<___>>>>><<<<<<<<<-<<<<<<---------<<_____>>--------->>>>>>->>>>>>-->>>,<<<<<<<<<<_____________>>>>>>>>>>,,))))))))--))<<<<<<<<<____>>>>>>>>>::::::<<<_____>>>::::
#=GC RF                    AuaUUuuCgACgGCaCuuuuUAAaaaaGGaGGaCauCAuGCCaaCACUACAAGGuAAAACaCAGUAACGAUuuGGCaCGauGuCAGCuCACGGaCaaGuGUACAAAUUUAAUUCaCuuGuCCGAAuGCccGaaUUuaagaCCuaGCAUUCGCuaGGucuUUUUAUuCCUAUUCGGaCAAU
//
