# STOCKHOLM 1.0
#=GF ID BASRCI337
#=GF AC RF02601
#=GF DE Brucella sRNA CI337
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 229.0
#=GF NC 125.8
#=GF TC 237.8
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 24673258
#=GF RT Identification of novel sRNAs in Brucella abortus 2308.
#=GF RA Dong H, Peng X, Wang N, Wu Q
#=GF RL FEMS Microbiol Lett. 2014;354:119-125.
#=GF CC Brucella abortus sRNA chromosome I, candidate 337
#=GF WK Brucella_sRNA
#=GF SQ 4

ACBP01000037.1/46168-46357 GCGAGGGUUCCUUUGAACGGUUCUUAAUUCCAGGCUGUCAUAUGCACCUGCCACCGCUUUUCGUCAAGAAACAGAAACCGCAACAGGGUGUCGCAGUAAUAAUCUUUCAGAAAGCGGGCAGUUUUAUGCCUGAUAUUACACCACGCUUUCGGUUUGGAAAAUA-AAAAGGCGGCCAGAGGCCGCCUUUUGA
ACJD01000005.1/46905-47095 GCGAGGGUUCCUUUGAACGGUUCUUAAUUCCAGGCUGUCAUAUGCACCUGCCACCGCUUUUCGUCAAGAAACAGAAACCGCAACAGGGUGUCGCAGUAAUAAUCUUUCAUAAAGCAGGCAGUUUUAUGCCUGAUAUUACACCACGCUUUCGGUUUGGAAAAUAAAAAAGGCGGCCAGAGGCCGCCUUUUGA
ADFA01000143.1/9599-9409   GCGAGGGUUCCUUUGAACGGUUCUUAAUUCCAGGCUGUCAUAUGCACCUGCCACCGCUUUUCGUCAAGAAACAGAAACCGCAACAGGGUGUCGCAGUAAUAAUCUUUCAGAAAGCGGGCAGUUUUAUGCCUGAUAUUACACCACGCUUCCGAUUUGGAAAAUAAAAAAGGCGGCCUGAAGCCGCCUUUUGA
AM040264.1/1856031-1856221 GCGAGGGUUCCUUUGAACGGUUCUUAAUUCCAGGCUGUCAUAUGCACCUGCCACCGCUUUUCGUCAAGAAACAGAAACCGCAACAGGGUGUCGCAGUAAUAAUCUUUCAGAAAGCGGGCAGUUUUAUGCCUGAUAUUACACCACGCUUUCGGUUUGGAAAAUAAAAAAGGCGGCCAGAGGCCGCCUUUUGA
#=GC SS_cons               ((((----(((((((--(((((,,,,,,,,<<<<-<<<_____>>>>>>>,,,,,,<<<<<<_____>>>>->>,))))))))-))))--))))::::::::<<<----<<<<<<<<<--<<--<<<_____>>>-->>->>->>>>>>>----->>>::::::<<<<<<<<<<<___>>>>>>>>>>>::
#=GC RF                    GCGaGGGUcCCuuuGAACGGuuCUUAAUUCCaGGCuGcCAUAUgCaCCuGCCACCGCuuuuCGUCAAGaaaCaGAaaCCGCaaCaGGgUGuCGCAGUAAUAAuCcUUCAggaaGCgGGCAGuUUuauGCCUGauaUUaCACCAcGCuuccGgUUUgGaAAAUAAaaaaGGCGGCcaGAgGCCGCCuuuuGA
//
