# STOCKHOLM 1.0
#=GF ID shuA_thermo
#=GF AC RF02597
#=GF DE shuA/chuA 5' UTR thermoregulator
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 58.0
#=GF NC 39.3
#=GF TC 58.6
#=GF SE Kouse et al, PMID:23704938
#=GF SS Published; PMID:23704938
#=GF TP Cis-reg; thermoregulator;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0002168; RNA_thermometer;
#=GF DR GO; 0009266; response to temperature stimulus;
#=GF DR GO; 0006417; regulation of translation;
#=GF RN [1]
#=GF RM 23704938
#=GF RT RNA-mediated thermoregulation of iron-acquisition genes in Shigella
#=GF RT dysenteriae and pathogenic Escherichia coli.
#=GF RA Kouse AB, Righetti F, Kortmann J, Narberhaus F, Murphy ER
#=GF RL PLoS One. 2013;8:e63781.
#=GF CC Shingella ShuA the outer-membrane heme receptor and its E.coli orthologue
#=GF CC ChuA expression are subject to temperature-dependent post-transcriptional
#=GF CC regulation by 5' UTR regions containing FourURNA thermometer. 
#=GF WK RNA_thermometer
#=GF SQ 5

AE005174.2/4458702-4458671 AUUUUUUAUUUUCCUCAUGGAGAAUCGMUAUG
CP000034.1/3287428-3287459 AUUUUUUAUUUUCCUCAUGGAGAAUCGCUAUG
CU928161.2/3863653-3863622 AUUUUUUAUUUUCCUCAUGGAGAAUCGCUAUG
CU928163.2/4108408-4108377 AUUUUUUAUUUUCCUCAUGGAGAAUCGCUAUG
CP000243.1/3916118-3916087 AUUUUUUAUUUUCCUCAUGGAGAAUCGCUAUG
#=GC SS_cons               :::::::<<<<<<<____>>>>>>>:::::::
#=GC RF                    AUUUUUUAUUUUCCUCAUGGAGAAUCGCUAUG
//
