INFERNAL1/a [1.1.4 | Dec 2020] NAME Spy392987 ACC RF02592 DESC S. pyogenes antisense RNA 392987 STATES 193 NODES 44 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue May 17 13:56:25 2016 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.620117 CKSUM 1770506209 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.50 NC 46.00 EFP7GF -8.6074 0.71921 ECMLC 0.59906 -5.35306 4.19160 1600000 365102 0.003287 ECMGC 0.44129 -13.97250 -0.86813 1600000 129877 0.003080 ECMLI 0.58697 -3.85832 5.32795 1600000 263588 0.004553 ECMGI 0.48017 -9.46916 1.92684 1600000 95171 0.004203 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.815 -7.022 -0.058 -5.436 IL 1 1 2 1 4 1 14 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 13 79 98 -7.842 -0.022 -6.496 1.660 -2.126 -1.782 -1.645 D 4 2 3 5 3 0 8 77 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 12 78 97 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 7 5 3 8 3 0 7 76 96 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 11 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 63 - U - - MR 9 8 3 11 3 1 12 77 96 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 10 8 3 11 3 0 5 75 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - U - - MR 12 11 3 14 3 1 11 76 95 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 13 11 3 14 3 0 4 74 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - U - - MR 15 14 3 17 3 1 11 75 94 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 16 14 3 17 3 0 4 73 93 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - U - - MR 18 17 3 20 5 1 10 74 93 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 19 17 3 20 5 0 3 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 7 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 59 g u - - MP 21 20 3 25 6 2 12 73 92 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.464 -2.294 -3.617 1.223 -4.208 -4.937 0.156 -3.662 -3.323 1.563 -3.836 2.902 -0.205 -4.174 -1.785 -2.352 ML 22 20 3 25 6 1 5 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 5 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 1 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 58 G C - - MP 27 26 6 31 6 2 11 71 90 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 28 26 6 31 6 1 4 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 57 G C - - MP 33 32 6 37 6 2 11 69 88 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 34 32 6 37 6 1 4 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 56 A U - - MP 39 38 6 43 6 2 10 67 86 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 40 38 6 43 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 55 A U - - MP 45 44 6 49 6 2 10 65 84 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 46 44 6 49 6 1 4 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 54 U A - - MP 51 50 6 55 6 2 9 63 82 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 52 50 6 55 6 1 3 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 53 a u - - MP 57 56 6 61 6 2 9 61 80 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.200 -2.304 -3.303 2.564 -3.756 -4.501 0.456 -3.493 -3.207 1.730 -3.744 1.479 0.184 -3.663 -1.436 -2.175 ML 58 56 6 61 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 4 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 52 A U - - MP 63 62 6 67 6 2 8 59 78 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 64 62 6 67 6 1 3 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 51 A U - - MP 69 68 6 73 6 2 7 57 76 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 70 68 6 73 6 1 2 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 50 U A - - MP 75 74 6 79 6 2 5 55 74 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 76 74 6 79 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 49 C G - - MP 81 80 6 85 4 2 4 53 72 -6.815 -7.022 -0.058 -5.436 -4.305 -4.187 -4.035 -0.443 -2.809 -4.478 3.467 -3.594 -4.077 -0.165 -4.363 -2.132 0.728 -4.389 -0.511 -2.925 ML 82 80 6 85 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 2 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - U - - - ML 87 86 6 89 5 1 3 50 70 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 88 86 6 89 5 0 0 49 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 1 51 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 48 c g - - MP 90 89 3 94 6 2 4 49 69 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.372 -3.419 -3.316 0.119 0.744 -3.924 2.944 -3.102 -3.351 0.271 -3.764 -1.597 1.133 -3.561 -0.182 -2.301 ML 91 89 3 94 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 47 U A - - MP 96 95 6 100 4 2 2 47 67 -6.815 -7.022 -0.058 -5.436 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 97 95 6 100 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 102 101 6 104 3 1 1 45 64 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 103 101 6 104 3 0 0 43 63 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 105 104 3 107 3 1 1 44 63 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 106 104 3 107 3 0 0 42 62 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - C - - - ML 108 107 3 110 3 1 1 43 62 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 109 107 3 110 3 0 0 41 61 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 43 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 46 - C - - MR 111 110 3 113 3 1 1 42 61 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 112 110 3 113 3 0 0 40 59 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 42 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - A - - MR 114 113 3 116 3 1 1 41 60 -8.240 -0.020 -6.558 1.660 -2.126 -1.782 -1.645 D 115 113 3 116 3 0 0 39 58 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 44 - U - - MR 117 116 3 119 5 1 1 40 59 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 118 116 3 119 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 43 U A - - MP 120 119 3 124 6 2 2 39 58 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 121 119 3 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 42 A U - - MP 126 125 6 130 6 2 2 37 56 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 127 125 6 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 41 G C - - MP 132 131 6 136 6 2 2 35 54 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 133 131 6 136 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 40 U A - - MP 138 137 6 142 6 2 2 33 52 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 139 137 6 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 39 g u - - MP 144 143 6 148 4 2 2 31 50 -6.815 -7.022 -0.337 -2.383 -3.252 -2.253 -3.379 2.087 -3.920 -4.594 0.340 -3.541 -3.219 1.711 -3.743 2.248 0.066 -3.775 -1.563 -2.208 ML 145 143 6 148 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - A - - - ML 150 149 6 152 3 1 1 28 47 -8.015 -0.024 -6.333 1.504 -1.654 -1.357 -1.135 D 151 149 6 152 3 0 0 27 46 -6.471 -0.360 -2.254 IL 152 152 3 152 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 38 - C - - MR 153 152 3 155 5 1 1 27 46 -6.987 -0.042 -6.802 -7.015 -7.906 -1.448 1.534 -2.260 -0.922 D 154 152 3 155 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 37 A U - - MP 156 155 3 160 6 2 2 26 45 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 157 155 3 160 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 36 G C - - MP 162 161 6 166 6 2 2 24 43 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 163 161 6 166 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 35 U A - - MP 168 167 6 172 4 2 2 22 41 -6.815 -7.022 -0.058 -5.436 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 169 167 6 172 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - G - - - ML 174 173 6 176 3 1 1 19 38 -7.842 -0.022 -6.496 -1.318 -2.495 1.655 -1.880 D 175 173 6 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 177 176 3 179 3 1 1 18 36 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - C - - - ML 180 179 3 182 3 1 1 16 35 -7.842 -0.022 -6.496 -1.448 1.534 -2.260 -0.922 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 183 182 3 185 3 1 1 15 33 -7.842 -0.022 -6.496 -1.318 -2.495 1.655 -1.880 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - u - - - ML 186 185 3 188 3 1 1 13 32 -7.842 -0.022 -6.496 -0.640 0.058 -1.388 0.952 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.660 -2.126 -1.782 -1.645 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Spy392987 ACC RF02592 DESC S. pyogenes antisense RNA 392987 LENG 63 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue May 17 13:56:25 2016 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 3 EFFN 2.358398 CKSUM 1770506209 STATS LOCAL MSV -7.9529 0.71921 STATS LOCAL VITERBI -8.7383 0.71921 STATS LOCAL FORWARD -3.3159 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39217 1.59344 1.59947 1.06063 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 0.00000 * 1 0.15354 3.24767 2.97092 2.95239 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 2 2.61780 2.58043 3.13552 0.21342 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 3 1.92275 2.90691 0.30529 2.77676 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 4 2.59074 3.24864 0.16847 3.18809 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 5 2.59095 3.24889 0.16842 3.18843 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 6 0.33854 2.78221 1.83896 2.71350 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 7 0.33861 2.78194 1.83891 2.71311 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 8 2.97746 1.90962 2.72940 0.30695 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 9 0.78407 2.64684 0.94588 2.47405 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 10 0.33882 2.78114 1.83877 2.71196 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 11 0.33887 2.78094 1.83873 2.71167 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 12 2.97523 1.90950 2.72842 0.30722 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 13 3.19937 0.23885 2.97778 2.11386 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 14 2.61780 2.58043 3.13552 0.21342 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 15 2.66526 0.41222 2.47997 1.69015 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 16 2.97884 1.90970 2.73001 0.30679 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 17 2.61780 2.58043 3.13552 0.21342 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 18 2.61780 2.58043 3.13552 0.21342 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 19 2.85650 0.19935 3.43260 2.39729 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 20 2.97663 1.90958 2.72904 0.30705 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 21 0.33854 2.78220 1.83896 2.71349 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 22 2.59090 3.24884 0.16843 3.18836 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 23 2.97884 1.90970 2.73001 0.30679 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 24 1.15839 2.76083 0.60298 2.58238 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.25243 3.87457 1.59788 1.46634 0.26236 1.09861 0.40547 25 0.24339 2.83092 2.59584 2.49507 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.05207 3.67422 3.67422 1.46634 0.26236 0.18668 1.77023 26 0.34051 2.77471 1.83761 2.70269 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 27 2.58458 3.24132 0.16985 3.17792 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 28 2.97311 1.90939 2.72748 0.30748 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 29 2.70894 3.58800 0.14681 3.16349 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 30 2.61780 2.58043 3.13552 0.21342 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 31 2.85650 0.19935 3.43260 2.39729 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 32 2.70894 3.58800 0.14681 3.16349 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 33 1.99271 1.31668 2.52621 0.66225 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 34 0.15354 3.24767 2.97092 2.95239 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 35 0.34815 2.91420 1.74658 2.72743 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 36 3.39324 0.19922 3.08460 2.28985 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 37 2.94429 2.13448 2.59540 0.28178 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 38 2.85650 0.19935 3.43260 2.39729 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 39 2.79503 1.74183 2.55899 0.37643 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 40 0.34795 2.91513 1.74668 2.72856 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 41 3.39683 0.19890 3.08618 2.29053 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 42 2.94662 2.13476 2.59628 0.28149 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 43 0.34707 2.91921 1.74709 2.73354 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 44 2.61779 2.58043 3.13552 0.21342 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 45 0.15354 3.24767 2.97092 2.95239 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 46 2.85650 0.19935 3.43260 2.39729 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 47 0.34916 2.90951 1.74611 2.72172 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 48 1.28542 2.63669 0.57237 2.43403 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 49 2.39015 3.14470 0.20645 2.95970 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 50 0.34855 2.91232 1.74639 2.72514 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 51 2.93682 2.13357 2.59257 0.28273 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 52 2.93746 2.13365 2.59282 0.28265 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 53 2.69031 1.69375 2.44695 0.41286 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 54 0.34824 2.91377 1.74654 2.72690 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 55 2.94045 2.13401 2.59395 0.28227 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 56 2.94200 2.13420 2.59454 0.28207 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 57 3.39691 0.19889 3.08621 2.29055 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 58 3.40139 0.19850 3.08818 2.29140 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 59 2.99908 1.91560 2.71081 0.30594 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 60 2.61780 2.58043 3.13552 0.21342 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 61 2.61780 2.58043 3.13552 0.21342 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 62 2.61779 2.58043 3.13552 0.21342 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 63 2.61780 2.58043 3.13552 0.21342 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02143 3.85359 * 1.46634 0.26236 0.00000 * //