INFERNAL1/a [1.1.5 | Sep 2023] NAME Spy392987 ACC RF02592 DESC S. pyogenes antisense RNA 392987 STATES 193 NODES 44 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 17:30:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02592/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.620117 CKSUM 1770506209 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 48.30 NC 45.30 EFP7GF -8.6074 0.71921 ECMLC 0.59906 -5.35306 4.19160 1600000 365102 0.003287 ECMGC 0.44129 -13.97251 -0.86813 1600000 129877 0.003080 ECMLI 0.58697 -3.85832 5.32795 1600000 263588 0.004553 ECMGI 0.48017 -9.46916 1.92684 1600000 95171 0.004203 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.815 -7.022 -0.058 -5.436 IL 1 1 2 1 4 1 14 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 13 79 98 -7.842 -0.022 -6.496 1.660 -2.126 -1.782 -1.645 D 4 2 3 5 3 0 8 77 97 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 12 78 97 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 7 5 3 8 3 0 7 76 96 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 11 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 63 - U - - MR 9 8 3 11 3 1 12 77 96 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 10 8 3 11 3 0 5 75 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - U - - MR 12 11 3 14 3 1 11 76 95 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 13 11 3 14 3 0 4 74 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - U - - MR 15 14 3 17 3 1 11 75 94 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 16 14 3 17 3 0 4 73 93 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - U - - MR 18 17 3 20 5 1 10 74 93 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 19 17 3 20 5 0 3 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 7 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 59 g u - - MP 21 20 3 25 6 2 12 73 92 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.464 -2.294 -3.617 1.223 -4.208 -4.937 0.156 -3.662 -3.323 1.563 -3.836 2.902 -0.205 -4.174 -1.785 -2.352 ML 22 20 3 25 6 1 5 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 5 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 1 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 58 G C - - MP 27 26 6 31 6 2 11 71 90 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 28 26 6 31 6 1 4 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 6 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 57 G C - - MP 33 32 6 37 6 2 11 69 88 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 34 32 6 37 6 1 4 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 56 A U - - MP 39 38 6 43 6 2 10 67 86 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 40 38 6 43 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 55 A U - - MP 45 44 6 49 6 2 10 65 84 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 46 44 6 49 6 1 4 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 54 U A - - MP 51 50 6 55 6 2 9 63 82 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 52 50 6 55 6 1 3 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 53 a u - - MP 57 56 6 61 6 2 9 61 80 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.200 -2.304 -3.303 2.564 -3.756 -4.501 0.456 -3.493 -3.207 1.730 -3.744 1.479 0.184 -3.663 -1.436 -2.175 ML 58 56 6 61 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 4 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 52 A U - - MP 63 62 6 67 6 2 8 59 78 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 64 62 6 67 6 1 3 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 51 A U - - MP 69 68 6 73 6 2 7 57 76 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 70 68 6 73 6 1 2 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 50 U A - - MP 75 74 6 79 6 2 5 55 74 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 76 74 6 79 6 1 2 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 49 C G - - MP 81 80 6 85 4 2 4 53 72 -6.815 -7.022 -0.058 -5.436 -4.305 -4.187 -4.035 -0.443 -2.809 -4.478 3.467 -3.594 -4.077 -0.165 -4.363 -2.132 0.728 -4.389 -0.511 -2.925 ML 82 80 6 85 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 2 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - U - - - ML 87 86 6 89 5 1 3 50 70 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 88 86 6 89 5 0 0 49 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 1 51 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 48 c g - - MP 90 89 3 94 6 2 4 49 69 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.372 -3.419 -3.316 0.119 0.744 -3.924 2.944 -3.102 -3.351 0.271 -3.764 -1.597 1.133 -3.561 -0.182 -2.301 ML 91 89 3 94 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 47 U A - - MP 96 95 6 100 4 2 2 47 67 -6.815 -7.022 -0.058 -5.436 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 97 95 6 100 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 102 101 6 104 3 1 1 45 64 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 103 101 6 104 3 0 0 43 63 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 105 104 3 107 3 1 1 44 63 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 106 104 3 107 3 0 0 42 62 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - C - - - ML 108 107 3 110 3 1 1 43 62 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 109 107 3 110 3 0 0 41 61 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 43 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 46 - C - - MR 111 110 3 113 3 1 1 42 61 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 112 110 3 113 3 0 0 40 59 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 42 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - A - - MR 114 113 3 116 3 1 1 41 60 -8.240 -0.020 -6.558 1.660 -2.126 -1.782 -1.645 D 115 113 3 116 3 0 0 39 58 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 44 - U - - MR 117 116 3 119 5 1 1 40 59 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 118 116 3 119 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 43 U A - - MP 120 119 3 124 6 2 2 39 58 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 121 119 3 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 42 A U - - MP 126 125 6 130 6 2 2 37 56 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 127 125 6 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 41 G C - - MP 132 131 6 136 6 2 2 35 54 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 133 131 6 136 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 40 U A - - MP 138 137 6 142 6 2 2 33 52 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 139 137 6 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 39 g u - - MP 144 143 6 148 4 2 2 31 50 -6.815 -7.022 -0.337 -2.383 -3.252 -2.253 -3.379 2.087 -3.920 -4.594 0.340 -3.541 -3.219 1.711 -3.743 2.248 0.066 -3.775 -1.563 -2.208 ML 145 143 6 148 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - A - - - ML 150 149 6 152 3 1 1 28 47 -8.015 -0.024 -6.333 1.504 -1.654 -1.357 -1.135 D 151 149 6 152 3 0 0 27 46 -6.471 -0.360 -2.254 IL 152 152 3 152 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 38 - C - - MR 153 152 3 155 5 1 1 27 46 -6.987 -0.042 -6.802 -7.015 -7.906 -1.448 1.534 -2.260 -0.922 D 154 152 3 155 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 37 A U - - MP 156 155 3 160 6 2 2 26 45 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 157 155 3 160 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 36 G C - - MP 162 161 6 166 6 2 2 24 43 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 163 161 6 166 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 35 U A - - MP 168 167 6 172 4 2 2 22 41 -6.815 -7.022 -0.058 -5.436 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 169 167 6 172 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - G - - - ML 174 173 6 176 3 1 1 19 38 -7.842 -0.022 -6.496 -1.318 -2.495 1.655 -1.880 D 175 173 6 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 177 176 3 179 3 1 1 18 36 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - C - - - ML 180 179 3 182 3 1 1 16 35 -7.842 -0.022 -6.496 -1.448 1.534 -2.260 -0.922 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 183 182 3 185 3 1 1 15 33 -7.842 -0.022 -6.496 -1.318 -2.495 1.655 -1.880 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - u - - - ML 186 185 3 188 3 1 1 13 32 -7.842 -0.022 -6.496 -0.640 0.058 -1.388 0.952 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.660 -2.126 -1.782 -1.645 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Spy392987 ACC RF02592 DESC S. pyogenes antisense RNA 392987 LENG 63 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 17:30:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02592/CM NSEQ 3 EFFN 2.358398 CKSUM 1770506209 STATS LOCAL MSV -7.9529 0.71921 STATS LOCAL VITERBI -8.7383 0.71921 STATS LOCAL FORWARD -3.3159 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39217 1.59344 1.59947 1.06063 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 0.00000 * 1 0.15354 3.24767 2.97092 2.95239 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 2 2.61780 2.58043 3.13552 0.21342 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 3 1.92275 2.90691 0.30529 2.77676 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 4 2.59074 3.24864 0.16847 3.18809 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 5 2.59095 3.24889 0.16842 3.18843 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 6 0.33854 2.78221 1.83896 2.71350 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 7 0.33861 2.78194 1.83891 2.71311 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 8 2.97746 1.90962 2.72940 0.30695 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 9 0.78407 2.64684 0.94588 2.47405 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 10 0.33882 2.78114 1.83877 2.71196 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 11 0.33887 2.78094 1.83873 2.71167 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 12 2.97523 1.90950 2.72842 0.30722 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 13 3.19937 0.23885 2.97778 2.11386 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 14 2.61780 2.58043 3.13552 0.21342 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 15 2.66526 0.41222 2.47997 1.69015 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 16 2.97884 1.90970 2.73001 0.30679 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 17 2.61780 2.58043 3.13552 0.21342 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 18 2.61780 2.58043 3.13552 0.21342 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 19 2.85650 0.19935 3.43260 2.39729 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 20 2.97663 1.90958 2.72904 0.30705 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 21 0.33854 2.78220 1.83896 2.71349 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 22 2.59090 3.24884 0.16843 3.18836 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 23 2.97884 1.90970 2.73001 0.30679 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 24 1.15839 2.76083 0.60298 2.58238 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.25243 3.87457 1.59788 1.46634 0.26236 1.09861 0.40547 25 0.24339 2.83092 2.59584 2.49507 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.05207 3.67422 3.67422 1.46634 0.26236 0.18668 1.77023 26 0.34051 2.77471 1.83761 2.70269 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 27 2.58458 3.24132 0.16985 3.17792 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 28 2.97311 1.90939 2.72748 0.30748 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 29 2.70894 3.58800 0.14681 3.16349 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 30 2.61780 2.58043 3.13552 0.21342 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 31 2.85650 0.19935 3.43260 2.39729 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 32 2.70894 3.58800 0.14681 3.16349 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 33 1.99271 1.31668 2.52621 0.66225 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 34 0.15354 3.24767 2.97092 2.95239 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 35 0.34815 2.91420 1.74658 2.72743 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 36 3.39324 0.19922 3.08460 2.28985 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 37 2.94429 2.13448 2.59540 0.28178 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 38 2.85650 0.19935 3.43260 2.39729 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 39 2.79503 1.74183 2.55899 0.37643 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 40 0.34795 2.91513 1.74668 2.72856 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 41 3.39683 0.19890 3.08618 2.29053 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 42 2.94662 2.13476 2.59628 0.28149 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 43 0.34707 2.91921 1.74709 2.73354 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 44 2.61779 2.58043 3.13552 0.21342 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 45 0.15354 3.24767 2.97092 2.95239 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 46 2.85650 0.19935 3.43260 2.39729 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 47 0.34916 2.90951 1.74611 2.72172 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 48 1.28542 2.63669 0.57237 2.43403 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 49 2.39015 3.14470 0.20645 2.95970 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 50 0.34855 2.91232 1.74639 2.72514 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 51 2.93682 2.13357 2.59257 0.28273 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 52 2.93746 2.13365 2.59282 0.28265 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 53 2.69031 1.69375 2.44695 0.41286 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 54 0.34824 2.91377 1.74654 2.72690 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 55 2.94045 2.13401 2.59395 0.28227 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 56 2.94200 2.13420 2.59454 0.28207 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 57 3.39691 0.19889 3.08621 2.29055 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 58 3.40139 0.19850 3.08818 2.29140 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 59 2.99908 1.91560 2.71081 0.30594 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 60 2.61780 2.58043 3.13552 0.21342 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 61 2.61780 2.58043 3.13552 0.21342 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 62 2.61779 2.58043 3.13552 0.21342 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04241 3.87457 3.87457 1.46634 0.26236 1.09861 0.40547 63 2.61780 2.58043 3.13552 0.21342 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02143 3.85359 * 1.46634 0.26236 0.00000 * //