# STOCKHOLM 1.0
#=GF ID tsr31
#=GF AC RF02580
#=GF DE S. aureus tsr31 small RNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 50.0
#=GF NC 49.8
#=GF TC 50.9
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 26861020
#=GF RT Genome-wide Annotation, Identification, and Global Transcriptomic Analysis
#=GF RT of Regulatory or Small RNA Gene Expression in Staphylococcus aureus.
#=GF RA Carroll RK, Weiss A, Broach WH, Wiemels RE, Mogen AB, Rice KC, Shaw LN
#=GF RL MBio. 2016;7:e01990-e01915.
#=GF WK Bacterial_small_RNA
#=GF SQ 4

ACJS01000063.1/24795-24726 UCCUUUAAAUAGGACACGUGUAUAAAAUUUAUACGCUCCCCUUACAAAAUUUGUGAGAGGGAGCGUUUUU
ACPZ01000047.1/53336-53268 UCCUUUAAAUAGGACACGUGUAUAAAUGUUAUACGCUCCCCUUACA-AAUAUGUGAGAGGGAGCGUUUUU
AP006716.1/914948-915016   UCCUUUAAAUAGGACACGUGUAUAAAUCAUAUACGCUCCCCUUACAGA-UAUGUGAGAGGGAGCGAUUUU
CP000255.1/2245035-2244966 UCCUUUAAAUAGGACACGUGUAUAAAAUUUAUACGCUCCCCUUACAGAAUUUGUGAGAGGGAGCGUUUUU
#=GC SS_cons               <<<<______>>>>::::::::::::::::::<<<<<<<<<<<<<<_____>>>>>>->>>>>>>>::::
#=GC RF                    UCCUUUAAAUAGGACACGUGUAUAAAuuuUAUaCGCUCCCCUuACAgAAUaUGUgAGAGGGAGCGuUUUU
//
