# STOCKHOLM 1.0
#=GF ID Ricks_sRNA10
#=GF AC RF02574
#=GF DE Rickettsia sRNA 10
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 97.0
#=GF NC 96.7
#=GF TC 98.1
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 26679185
#=GF RT Bacterial small RNAs in the Genus Rickettsia.
#=GF RA Schroeder CL, Narra HP, Rojas M, Sahni A, Patel J, Khanipov K, Wood TG,
#=GF RA Fofanov Y, Sahni SK
#=GF RL BMC Genomics. 2015;16:1075.
#=GF WK Rickettsia
#=GF SQ 3

CP001584.1/397318-397671 UUUUAGAAAUGGAA-AAUAGACCUUUGAUGACUCUAAAGAAAUUUUUAACCUUCCAU--UUAUGACUGAUCUAUUAAUCUCAAAUAUGACAUAGUGCUAAUUUUGAUCUAAGUAAGCUCUGAAUCGUGAAUCUCUUAAGUAUUAAAAUAGUAAGUUGUCUUAAAAAUUAUUCUAUCUCCAAUCAGUACACUACACUAUAA
AE017197.1/398283-398629 UUUUAGAAACAAAC-AAUAUACAUUUGAUGAUUAUAAAGAAAUUUUUAACUUUGCAU--UUAUGACUGAUUUAUCAAUCUCAAAUAUGACAUAGUGCUAAUUUUGAUUUAAGUAAACUCCAAAUCGGUAAUCGCUGAAGUAUUAAAACAGUUAGUGGUUUUACAAAUUAUUCUGUCUCUAAUCAGUACAU-----UAUAA
CP000053.1/560743-561096 UUUUAGAAAUGAAAAAAUGGACUUUUGACGAGGCUAAAGAAAUCUUUAGCUUUUCGUUUAUGGAGCUGGUCUAUCAAGCUCAAACAAUACAUCGUGCUAAUUUUGAUCCUAAUAAGAUCCAAAUCAGCAGCCUCUUAAGCAUUAAAACAGGUAGUUGUCCUGAAAAUUGUAAAUUCUGUCCUCAAUCUUC-UCACUAUAA
#=GC SS_cons             ::::::::::::::.::::::[[[--[[[[[-[[[[[[[[,,,,,,,,,,,,((-((..-((((((((,,,,,,,,,,,,,,,,<<-<<<<---<<<<<-<<<<<<<<<<<<-----<<________>>---->>>->>->>>>>>>>>>>>--->>>>->>,,,,,,,,,,,,,,,,,,<<<<<<<--<.----<<<<_
#=GC RF                  UUUUAGAAAugaAa.AAUagACcuUUgacgaugcUaaaGaAAUuUUUAaCuUccCgc..uuguagCUgaUcUAUcAAuCUCAAAcaugaCaUaGugCUgAUUUUgaUcuaaGUAAgcUccaAAUCgggAauCuCuuAaguAuuAAAAcAGcaAGUuGucuugaAAAUUaUucuuUCUcuaaUcaacacac.uCACUauaA

CP001584.1/397318-397671 AAAUUGCUAUAAAAA-AGAACUAUUGAUGAAAAUUGAGGAGGUAAUUAUGGCAGCAAAAUGUACCAAAGCACUAAUUAUAGACUCACUUUUAUAUUACAGUUAUGU-GU-UGAUGCAUCAAUGUUGAUGUAUCUUUAGAUUAUUUAGGCGAAAAAUUAGG
AE017197.1/398283-398629 AGAUUGCUAUAAAAA-AGAACUGUUGAUGAAAAUUGAGGAGAUAAUUAUAGCAGCAAAAUGUGCUAAAGCAUUAAUCUAAUGAUCAAUUUUAUAUUGCAGUUAUGU-AU-UGGUACGUCAACG-UGAUGCAUCUUUAGAUUGUUUAGG-AAUAAAUUAGG
CP000053.1/560743-561096 AACUUA-UGUAAAAAAAGAGCCUUUAAUGCAAAUUGAGGAUGUAAUUACGGCAGCAAAACGUGCUAAAGCAGCAGGUA-GUACUCGCUUUUGUAUGGGAGCUGCGUGGCGUGGUCCACGU--G-AUGAGGAUUUAAAACUGGUUUGCGAGAUGAUUAAGG
#=GC SS_cons             _______>>>>----.->--->>>>>>>,<<<<-<<<<---<<<<<<<--<<________________>>-->>>>>>>--->>>>->>>>,,,,,,))))))))-.)).-))<<<<<<<___.>>>>>>>]]]]]]]]]]]]]-]]]::::::::::::
#=GC RF                  AaaUUgCuauAAAAA.AgAaCuguugAuGaaaaUuGagGAgguaauUaugGCAGCAAAAuGUgCuAAAGCAuuAauuacauacuCacuuuuaUAUugcAGcuacgU.gc.UggUgCgccaAuG.uggcGcAuCuuuAgcucguuUagGagAuaAaUuAGG
//
