# STOCKHOLM 1.0
#=GF ID Mcr7
#=GF AC RF02571
#=GF DE mcr7 sRNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 380.0
#=GF NC 147.3
#=GF TC 384.9
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0030371; translation repressor activity;
#=GF RN [1]
#=GF RM 24874799
#=GF RT The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in
#=GF RT Mycobacterium tuberculosis.
#=GF RA Solans L, Gonzalo-Asensio J, Sala C, Benjak A, Uplekar S, Rougemont J,
#=GF RA Guilhot C, Malaga W, Martin C, Cole ST
#=GF RL PLoS Pathog. 2014;10:e1004183.
#=GF RN [2]
#=GF RM 20181675
#=GF RT Multiple small RNAs identified in Mycobacterium bovis BCG are also
#=GF RT expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis.
#=GF RA DiChiara JM, Contreras-Martinez LM, Livny J, Smith D, McDonough KA,
#=GF RA Belfort M
#=GF RL Nucleic Acids Res. 2010;38:4067-4078.
#=GF CC Mcr7 sRNA encoded by the mcr7 gene modulates translation of the tatC mRNA
#=GF CC and impacts the activity of the Twin Arginine Translocation (Tat) protein
#=GF CC secretion apparatus.
#=GF WK Mycobacterium_tuberculosis_sRNA
#=GF SQ 2

HE572590.1/2750779-2751129 CCGGCGGCCCGACACAUGCAGCCGAGUUGGCUGGCUCGGAAGGGGGACAGAGUUGACCAUGACAGCGAGUGUGGCCAAGGUGACAGCUGCACGCCCGGAGCCAAGCGCGGCGUGGGCUGAAGCCCGGCGGCGGGUACGCCAACGCCGCGAGGACAUGCUGCGCCAUCCUGCAUUUCUGUCCAAGCAGCUCCCUCCCGAAC
BX842579.1/267333-267681   CCGGCGGCCCGACACAUGCAGCCGAGUUGGCUGGCUCGGAAGGGGGACAGAGUUGACCAUGACAGCGAGUGUGGCCAAGGUGACAGCUGCACGCCCGGAGCCAAGCGCGGCGUGGGCUGAAGCCCGGCGGCGGGUACGCCAACGCCGCGAGGACAUGCUGCGCCAUCCUGCAUUUCUGUCCAAGCAGCUCCCUGCCGAAC
#=GC SS_cons               ::(((((((((((-------((((-(((((((((-((((-((((((((((((-((--((-((--(((((((((-((,,<<<--<<<<<-<<<<<<<<________>>->>>>>>>>>>>-->>><<<<<<<<____>>>>--->>>>,,,))-))))))-)))--))-))))-))))))))--------))))-))))-)
#=GC RF                    ccGgcGGcccGacAcAUGcAGccGAGucGGcuGGcucGGAaGGGGGacaGagUuGAccaUGacAGcGaGcguGGccAAGGcGAcaGccGcacGcccGGAGccAAGCgcggCgugggCugAAgCCcGGcGGcGGGUACgCCAAcgCCgcGAggACacgCuGCgCcAuCcugCaUcuCuguCCAAGcAGcUCCCuaCCgaAC

HE572590.1/2750779-2751129 CAGCGCACGACGACGGCGUCGCGGCCGUCUACGACAUCGCGGUUGCGCGUCGGCGCCGACCCGCUUGAGCGGUCCCCGACGCGUCAACGUCGCGCCGGCUGCCCGGUAAACCGGCAAUCGACGACCGAGCCUUGGCGGGCGCGUCGCGCUC
BX842579.1/267333-267681   CAGCAGACGACGACGGCGUCGCGGCCGUCUACGACAUCGCGAUUGCGCGUCGGCGCCGACCUGCUUGAGCGGGUCCCGGCGGGUCAACGUCG--GCGGCUGCCGGGUAAACCGGCAAUCGACGACCGGGCCUUGGCGGGCGCGUCGCGUUC
#=GC SS_cons               ))))---))))--))))))))-)))))))::::::::(((((((((-((((((<<<<<<<<<<<____>>>>>>>-->>>><<<<---<<<<---<<<-<<<<<<_____>>>>>>->>>->>>>-->>>>))))))-)))-)))))):::
#=GC RF                    CagCaaACgaCGACggCguCgcggCCgcCUAcGAcAUcGcGgccGcGcGccggcGccGgcccGcUUGAgCgggcCccggCggGccAAcGucGcgacGgcuGccgGGUAAACcggCaAcCgACgaCcGggCcccggCgGgCgcgcCgCguUc
//
