# STOCKHOLM 1.0
#=GF ID YrlB
#=GF AC RF02565
#=GF DE Y RNA-like
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 97.0
#=GF NC 41.9
#=GF TC 97.0
#=GF SE Argasinska J
#=GF SS Published; PMID:23540697
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000405; Y_RNA;
#=GF RN [1]
#=GF RM 23540697
#=GF RT An RNA degradation machine sculpted by Ro autoantigen and noncoding RNA.
#=GF RA Chen X, Taylor DW, Fowler CC, Galan JE, Wang HW, Wolin SL
#=GF RL Cell. 2013;153:166-177.
#=GF CC In Deinococcus radiodurans Rsr is tethered via Y RNA to the
#=GF CC exoribonuclease PNPase and channels single-stranded RNA into the PNPase
#=GF CC cavity. Rsr and Y RNA enhance degradation of structured RNAs by PNPase.
#=GF CC This role could be conserved, as Rsr and ncRNAs called YrlA and YrlB (Y
#=GF CC RNA like) also associate with PNPase in an evolutionary distant bacterium
#=GF CC Salmonella Typhimurium.[1]
#=GF WK Y_RNA
#=GF SQ 2

ABEI01000012.1/80009-79932 AGCAUGGUACGAAUGCUGGUCAGGAUUACAUCUUUCUUAAUGGCUAUCAUCCUGGCUAUUUAUUUGCCAUGCCACCCU
FQ312003.1/3704437-3704360 AGCGCGGCGCGAAUGCUGGCCGGGAUUACAUCUUUCCCGAUGCGUAUCAUCCCGGCUAUGAAUUUGUCGCGCAACGCU
#=GC SS_cons               <<<--<<<<<<<----<<<<<<<<<<--<<<<______>>>>------>>>>>>>>>>-------->>>>>>-->>>>
#=GC RF                    AGcauGGcgcGaAUGCUgGcCgGGAUUACAUcUUUCuugAUGggUAUCAUCCcGgCuAUuuAUUUGuCgcgCaACgCU
//
