INFERNAL1/a [1.1.4 | Dec 2020] NAME Oskar_OES ACC RF02548 DESC Oocyte entry signal (OES) from oskar mRNA STATES 205 NODES 48 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Wed Jan 13 10:58:13 2016 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 3.202637 CKSUM 2855131640 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.00 NC 43.90 EFP7GF -11.1604 0.71922 ECMLC 0.60547 -5.02317 4.14290 1600000 308611 0.003888 ECMGC 0.41474 -14.12254 -0.47377 1600000 114945 0.003480 ECMLI 0.59400 -2.95856 5.92398 1600000 234753 0.005112 ECMGI 0.48042 -8.71918 2.43995 1600000 85179 0.004696 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 82 101 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 IL 1 1 2 1 6 1 16 84 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 16 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 68 U A - - MP 3 2 3 7 6 2 17 82 101 -9.294 -9.233 -0.074 -8.010 -4.618 -8.685 -3.710 -3.663 -3.730 -0.145 -3.033 -4.450 1.151 -3.617 -3.741 0.010 -4.213 -1.746 3.184 -3.953 -0.796 0.300 ML 4 2 3 7 6 1 13 81 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 12 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 8 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 15 82 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 67 g c - - MP 9 8 6 13 6 2 16 80 99 -9.239 -9.178 -0.019 -7.955 -8.234 -8.629 -2.829 -2.301 -2.885 1.528 -3.056 -3.628 1.263 -3.262 -3.052 2.571 -3.508 -0.239 0.683 -0.938 -0.859 -1.974 ML 10 8 6 13 6 1 12 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 11 79 98 -7.566 -6.295 -2.204 -6.273 -0.499 -4.487 -0.216 0.685 -0.933 0.010 D 12 8 6 13 6 0 8 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 80 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 66 a u - - MP 15 14 6 19 4 2 14 78 97 -7.269 -7.476 -0.042 -5.891 -3.113 -2.380 -3.252 2.349 -3.598 -4.241 0.365 -3.499 -3.195 1.501 -3.700 1.828 0.124 -3.492 -1.423 -0.213 ML 16 14 6 19 4 1 11 78 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 10 78 97 -5.459 -4.488 -0.842 -1.416 -0.245 -0.531 -0.872 0.940 D 18 14 6 19 4 0 8 77 96 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 13 80 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 12 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 21 20 6 23 3 1 12 75 95 -8.382 -0.015 -7.036 0.862 -0.547 -1.205 0.090 D 22 20 6 23 3 0 7 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 11 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 24 23 3 26 3 1 11 74 94 -8.382 -0.015 -7.036 0.795 -1.807 0.638 -1.241 D 25 23 3 26 3 0 6 73 92 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 27 26 3 29 5 1 11 73 92 -7.464 -0.337 -7.280 -2.371 -8.383 0.613 0.124 -1.238 -0.063 D 28 26 3 29 5 0 5 72 91 -4.959 -0.803 -4.221 -2.596 -2.508 IL 29 29 3 29 5 1 10 74 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 65 a u - - MP 30 29 3 34 6 2 12 72 92 -9.141 -9.080 -0.021 -7.857 -8.137 -8.532 -2.240 -2.206 -2.395 2.379 -2.359 -3.258 1.199 -0.757 -2.456 1.176 -3.002 -0.495 0.965 -2.554 -0.437 -0.225 ML 31 29 3 34 6 1 7 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 7 71 90 -8.202 -6.931 -1.011 -6.909 -1.135 -5.123 0.256 -0.654 -0.907 0.711 D 33 29 3 34 6 0 2 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 9 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 64 u a - - MP 36 35 6 40 6 2 10 70 90 -9.239 -9.178 -0.019 -7.955 -8.234 -8.629 -1.914 -2.086 -2.092 0.960 -0.868 -2.934 1.566 -0.299 -2.146 0.885 -2.708 -0.635 2.017 -2.238 -0.058 -0.360 ML 37 35 6 40 6 1 6 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 5 70 89 -7.566 -6.295 -0.869 -6.273 -1.407 -4.487 1.103 -0.978 -0.725 -0.435 D 39 35 6 40 6 0 2 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 7 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 63 u a - - MP 42 41 6 46 4 2 9 68 88 -7.393 -7.600 -0.039 -6.014 -1.754 -0.768 -0.700 1.050 -1.892 -2.790 1.421 -2.262 -2.006 1.017 -2.574 -0.510 2.021 -2.081 -0.084 -0.421 ML 43 41 6 46 4 1 5 69 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 3 69 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 2 68 87 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 7 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 6 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 48 47 6 50 3 1 7 66 85 -8.748 -0.014 -7.066 -0.094 0.378 -0.002 -0.387 D 49 47 6 50 3 0 1 65 84 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 5 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 62 - a - - MR 51 50 3 53 5 1 7 65 84 -7.464 -0.030 -7.280 -7.492 -8.383 0.980 -0.374 -1.280 -0.245 D 52 50 3 53 5 0 0 64 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 61 G C - - MP 54 53 3 58 6 2 8 64 83 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.965 -3.219 -5.051 0.091 -5.938 -4.896 -1.109 -5.454 -4.574 3.650 -4.895 0.007 -1.391 -4.629 -3.155 -3.934 ML 55 53 3 58 6 1 2 63 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 60 C G - - MP 60 59 6 64 6 2 6 62 81 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.555 -4.564 -4.242 -0.734 -2.900 -4.645 3.409 -3.709 -4.273 -0.565 -4.561 -2.563 0.661 -4.599 0.774 -3.099 ML 61 59 6 64 6 1 2 61 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 59 U A - - MP 66 65 6 70 6 2 5 60 79 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.609 -4.590 -4.407 -0.836 -3.223 -4.904 1.119 -3.979 -4.424 -0.654 -4.774 -2.597 3.434 -4.712 0.130 -3.214 ML 67 65 6 70 6 1 2 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 59 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 58 U A - - MP 72 71 6 76 4 2 3 58 77 -7.278 -8.524 -0.060 -4.977 -5.277 -5.116 -4.987 -1.352 -3.726 -5.447 0.611 -4.486 -4.985 -1.221 -5.303 -2.984 3.673 -5.374 -1.377 -3.665 ML 73 71 6 76 4 1 1 57 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 57 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 55 74 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 57 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 57 - u - - MR 78 77 6 80 3 1 1 56 75 -8.748 -0.065 -4.573 -0.326 0.345 -1.438 0.644 D 79 77 6 80 3 0 0 54 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 56 - U - - MR 81 80 3 83 5 1 2 55 74 -7.416 -0.031 -7.232 -7.444 -8.335 -0.361 -0.525 -1.487 1.117 D 82 80 3 83 5 0 0 54 73 -5.629 -0.556 -3.256 -4.687 -2.681 IR 83 83 3 83 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 55 g c - - MP 84 83 3 88 6 2 3 54 73 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -3.487 -2.532 -3.545 0.888 -4.040 -4.228 0.157 -3.931 -0.376 2.943 -4.000 1.310 -0.094 -3.568 -1.694 -2.536 ML 85 83 3 88 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 54 C G - - MP 90 89 6 94 6 2 3 52 71 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -3.788 -3.502 -3.767 0.259 -2.924 -4.511 3.115 -3.512 -3.724 0.517 -4.180 0.322 0.945 -4.017 -0.562 -2.599 ML 91 89 6 94 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 53 A U - - MP 96 95 6 100 6 2 3 50 69 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.017 -2.896 -4.115 3.368 -5.103 -5.895 -0.785 -4.241 -3.910 0.870 -4.507 0.981 -0.987 -4.820 -2.674 -2.883 ML 97 95 6 100 6 1 1 49 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 52 c g - - MP 102 101 6 106 6 2 3 48 67 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -2.693 -2.609 -2.835 0.726 -2.453 -3.630 2.627 -2.907 -0.597 0.903 -3.345 0.204 1.215 -2.985 -0.302 -1.876 ML 103 101 6 106 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 47 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 51 A U - - MP 108 107 6 112 4 2 2 46 65 -7.278 -8.524 -0.060 -4.977 -4.331 -3.746 -4.199 3.612 -4.513 -5.543 -0.518 -0.905 -4.372 -0.057 -4.918 -1.409 -0.886 -4.796 -2.351 -3.275 ML 109 107 6 112 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 50 - a - - MR 114 113 6 116 3 1 1 44 63 -8.748 -0.014 -7.066 0.911 -1.145 -1.295 0.333 D 115 113 6 116 3 0 0 42 61 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 49 - a - - MR 117 116 3 119 3 1 1 43 62 -8.748 -0.014 -7.066 0.888 -1.092 -0.669 0.072 D 118 116 3 119 3 0 0 41 60 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 48 - u - - MR 120 119 3 122 3 1 1 42 61 -8.748 -0.014 -7.066 0.224 -0.453 -1.231 0.745 D 121 119 3 122 3 0 0 40 59 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 47 - U - - MR 123 122 3 125 3 1 1 41 60 -8.748 -0.138 -3.496 -0.509 -0.591 -1.604 1.204 D 124 122 3 125 3 0 0 39 58 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 46 - A - - MR 126 125 3 128 3 1 1 40 59 -8.626 -0.015 -6.944 1.039 -0.604 -1.227 -0.217 D 127 125 3 128 3 0 0 38 57 -7.308 -2.485 -0.295 IR 128 128 3 128 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 45 - U - - MR 129 128 3 131 3 1 1 39 58 -8.626 -0.015 -6.944 -1.254 -0.609 -2.005 1.420 D 130 128 3 131 3 0 0 37 56 -7.308 -2.485 -0.295 IR 131 131 3 131 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 44 - U - - MR 132 131 3 134 3 1 1 38 57 -8.626 -0.234 -2.762 -1.470 -1.061 -2.214 1.558 D 133 131 3 134 3 0 0 36 55 -7.308 -2.485 -0.295 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - A - - MR 135 134 3 137 5 1 1 37 56 -3.477 -0.166 -6.960 -7.173 -8.064 1.248 -0.700 -1.271 -0.751 D 136 134 3 137 5 0 0 35 54 -6.543 -1.040 -1.324 -5.601 -3.595 IR 137 137 3 137 5 1 1 37 56 -2.719 -0.386 -6.231 -4.398 -5.504 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 41 a u - - MP 138 137 3 142 6 2 2 36 55 -9.197 -9.136 -0.020 -7.913 -8.193 -8.588 -3.583 -2.549 -3.700 2.814 -4.437 -5.142 -0.180 -3.873 -3.533 1.348 -4.096 1.887 -0.409 -4.203 -2.062 -2.508 ML 139 137 3 142 6 1 1 35 54 -7.238 -7.584 -0.517 -1.993 -7.434 -4.963 0.478 -0.963 0.398 -0.365 MR 140 137 3 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 21 40 A U - - MP 144 143 6 148 6 2 2 34 53 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.593 -3.447 -4.520 3.676 -5.306 -6.474 -0.951 -4.506 -4.417 0.207 -5.002 -0.817 -1.361 -5.501 -2.887 -3.334 ML 145 143 6 148 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 22 39 A U - - MP 150 149 6 154 6 2 2 32 51 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -4.593 -3.447 -4.520 3.676 -5.306 -6.474 -0.951 -4.506 -4.417 0.207 -5.002 -0.817 -1.361 -5.501 -2.887 -3.334 ML 151 149 6 154 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 38 U A - - MP 156 155 6 160 6 2 2 30 49 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -5.277 -5.116 -4.987 -1.352 -3.726 -5.447 0.611 -4.486 -4.985 -1.221 -5.303 -2.984 3.673 -5.374 -1.377 -3.665 ML 157 155 6 160 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 37 C G - - MP 162 161 6 166 6 2 2 28 47 -9.294 -9.233 -0.019 -8.010 -8.290 -8.685 -5.480 -5.464 -5.004 -1.639 -3.550 -5.292 3.760 -4.454 -5.100 -1.499 -5.244 -3.441 -0.150 -5.484 -1.295 -3.915 ML 163 161 6 166 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 36 A U - - MP 168 167 6 172 4 2 2 26 45 -7.393 -7.600 -0.039 -6.014 -4.593 -3.447 -4.520 3.676 -5.306 -6.474 -0.951 -4.506 -4.417 0.207 -5.002 -0.817 -1.361 -5.501 -2.887 -3.334 ML 169 167 6 172 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 26 - A - - - ML 174 173 6 176 3 1 1 23 42 -8.382 -0.015 -7.036 1.850 -3.214 -2.766 -2.843 D 175 173 6 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - C - - - ML 177 176 3 179 3 1 1 22 41 -8.382 -0.015 -7.036 -1.188 1.018 -2.041 0.370 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - G - - - ML 180 179 3 182 3 1 1 21 40 -8.382 -0.015 -7.036 -0.210 -2.236 1.384 -1.678 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - C - - - ML 183 182 3 185 3 1 1 20 38 -8.382 -0.015 -7.036 -2.758 1.813 -3.577 -1.978 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - C - - - ML 186 185 3 188 3 1 1 18 37 -8.382 -0.015 -7.036 -2.758 1.813 -3.577 -1.978 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - G - - - ML 189 188 3 191 3 1 1 17 36 -8.382 -0.015 -7.036 -2.437 -3.769 1.860 -3.150 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.382 -0.015 -7.036 -2.758 1.813 -3.577 -1.978 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - G - - - ML 195 194 3 197 3 1 1 14 33 -8.382 -0.015 -7.036 -2.437 -3.769 1.860 -3.150 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.382 -0.015 -7.036 -2.437 -3.769 1.860 -3.150 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - C - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -1.188 1.018 -2.041 0.370 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Oskar_OES ACC RF02548 DESC Oocyte entry signal (OES) from oskar mRNA LENG 67 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jan 13 10:58:13 2016 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 14 EFFN 4.918457 CKSUM 2855131640 STATS LOCAL MSV -7.9176 0.71922 STATS LOCAL VITERBI -8.7647 0.71922 STATS LOCAL FORWARD -3.9661 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30632 1.54935 1.51723 1.21241 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 0.00000 * 1 3.09860 2.11207 2.89548 0.25022 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.12024 4.28052 2.30806 1.46634 0.26236 1.09861 0.40547 2 1.53960 1.86369 0.76445 1.80277 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.03073 4.19102 4.19102 1.46634 0.26236 2.21794 0.11522 3 0.91061 2.94306 0.86691 2.08130 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.03073 4.19102 4.19102 1.46634 0.26236 0.24547 1.52479 4 0.72351 1.80446 2.38363 1.35412 4 a - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 5 0.77766 3.00094 0.86953 2.63623 5 a - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 6 0.91973 1.24201 2.41579 1.49936 6 a - - - 1.38629 1.38629 1.38629 1.38629 0.29683 4.28052 1.41472 1.46634 0.26236 1.09861 0.40547 7 0.92355 1.64679 1.69752 1.48241 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.03656 4.02025 4.02025 1.46634 0.26236 0.54225 0.87093 8 1.90511 1.25134 1.84886 0.89733 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03073 4.19102 4.19102 1.46634 0.26236 0.24547 1.52479 9 1.47976 1.65801 1.73548 0.90270 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 10 1.52392 1.03860 1.33018 1.80934 10 c - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 11 2.86948 3.80303 0.11008 3.68065 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 12 3.46878 0.30277 3.29065 1.64588 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 13 3.65899 2.28371 3.48380 0.17240 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 14 4.16447 2.88244 4.03764 0.09340 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 15 2.20433 2.94396 0.25523 2.77614 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 16 2.73750 0.44145 1.83976 2.01510 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 17 0.30656 3.77609 1.55862 3.48397 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 18 2.26433 0.73158 1.45480 1.70647 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 19 0.15212 2.78957 2.92814 3.64319 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 20 0.67031 3.14248 0.94927 2.84298 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 21 0.12594 3.79572 2.67029 3.62550 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 22 0.12009 3.86792 2.69054 3.71268 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 23 4.05328 2.86815 3.97191 0.09762 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 24 4.11690 0.09200 4.03060 2.92178 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 25 0.11501 3.93540 2.70852 3.79540 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 26 0.05857 4.16262 3.81093 3.95330 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 27 2.53219 0.58165 3.16378 1.14171 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 28 1.59682 3.28800 0.34712 2.92980 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 29 3.91792 0.07136 4.43019 3.29481 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 30 3.91792 0.07136 4.43019 3.29481 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 31 3.58620 4.56000 0.05628 4.10065 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 32 3.91792 0.07136 4.43019 3.29481 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 33 3.58620 4.56000 0.05628 4.10065 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 34 3.58620 4.56000 0.05628 4.10065 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 35 2.53219 0.58165 3.16378 1.14171 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 36 3.99730 3.09863 3.74543 0.09113 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 37 3.20066 4.20639 0.07794 3.94540 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 38 0.10821 4.20395 2.70765 3.86666 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 39 3.97908 3.09504 3.73630 0.09192 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 40 3.96611 3.09245 3.72974 0.09248 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.19345 4.28052 1.81983 1.46634 0.26236 1.09861 0.40547 41 3.25662 2.15176 3.10814 0.22250 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.27167 2.19580 2.06653 0.27007 1.44106 2.61834 0.07572 42 0.42473 1.91337 2.50225 2.14926 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00314 4.00314 1.46634 0.26236 0.56015 0.84658 43 2.78461 2.29716 3.30357 0.22196 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03102 4.18178 4.18178 1.46634 0.26236 2.28194 0.10768 44 2.60363 1.89231 3.13029 0.31257 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03102 4.18178 4.18178 1.46634 0.26236 2.28194 0.10768 45 0.58599 1.84516 2.42721 1.62373 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03102 4.18178 4.18178 1.46634 0.26236 0.22837 1.58880 46 1.85529 1.87264 2.73962 0.46955 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 47 1.21968 1.73787 2.37760 0.83009 48 u - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 48 0.71146 2.29765 1.90340 1.34892 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 49 0.68268 2.38078 2.48572 1.14258 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 50 3.86466 3.26426 3.54579 0.09216 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 51 1.64015 2.23723 0.66371 1.69088 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 52 3.67627 2.50638 3.55859 0.14544 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 53 2.26780 2.69230 0.40005 1.84232 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 54 2.21458 0.62532 2.76210 1.22911 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.07006 4.28052 2.92191 1.46634 0.26236 1.09861 0.40547 55 1.72211 1.81192 2.62592 0.53512 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.02925 4.23971 4.23971 1.46634 0.26236 0.41478 1.08024 56 1.69872 1.07092 2.58445 0.91892 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 57 0.10637 4.23853 2.71424 3.90104 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 58 0.24836 3.64979 1.82530 3.41867 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 59 2.49342 3.45156 0.16710 3.22986 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 60 3.89769 0.17485 3.65451 2.16932 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 61 0.63190 1.64694 2.47169 1.65372 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 62 1.10140 1.72283 1.33145 1.49192 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 63 0.96821 2.03971 1.46094 1.35420 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 64 1.75622 1.89693 1.79746 0.67030 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 65 2.88552 2.00697 2.71828 0.29600 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 66 2.24926 0.76807 1.74182 1.36487 67 c - - > 1.38629 1.38629 1.38629 1.38629 0.02806 4.28052 4.28052 1.46634 0.26236 1.09861 0.40547 67 0.43058 3.09111 1.94718 1.82175 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.01413 4.26659 * 1.46634 0.26236 0.00000 * //