INFERNAL1/a [1.1.5 | Sep 2023] NAME Oskar_OES ACC RF02548 DESC Oocyte entry signal (OES) from oskar mRNA STATES 205 NODES 48 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 04:26:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02548/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 3.188965 CKSUM 2855131640 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.20 NC 40.90 EFP7GF -11.1400 0.71924 ECMLC 0.61006 -4.94992 4.17056 1600000 313041 0.003833 ECMGC 0.41983 -13.91593 -0.43253 1600000 114940 0.003480 ECMLI 0.59513 -2.96136 5.94438 1600000 240428 0.004991 ECMGI 0.47530 -8.85706 2.42056 1600000 85107 0.004700 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 82 101 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 IL 1 1 2 1 6 1 16 84 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 16 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 68 U A - - MP 3 2 3 7 6 2 17 82 101 -9.292 -9.231 -0.075 -8.008 -4.604 -8.683 -3.759 -3.711 -3.779 -0.189 -3.079 -4.499 1.110 -3.663 -3.789 -0.032 -4.261 -1.791 3.225 -4.001 -0.838 0.184 ML 4 2 3 7 6 1 13 81 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 12 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 8 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 15 82 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 67 g c - - MP 9 8 6 13 6 2 16 80 99 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -2.831 -2.302 -2.887 1.510 -3.057 -3.629 1.268 -3.263 -3.053 2.577 -3.509 -0.239 0.684 -0.927 -0.858 -1.975 ML 10 8 6 13 6 1 12 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 11 79 98 -7.570 -6.299 -2.208 -6.278 -0.498 -4.491 -0.220 0.690 -0.937 0.008 D 12 8 6 13 6 0 8 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 80 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 66 a u - - MP 15 14 6 19 4 2 14 78 97 -7.264 -7.471 -0.043 -5.885 -3.106 -2.371 -3.246 2.331 -3.590 -4.230 0.373 -3.492 -3.188 1.505 -3.690 1.839 0.132 -3.484 -1.414 -0.201 ML 16 14 6 19 4 1 11 78 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 10 78 97 -5.463 -4.492 -0.838 -1.420 -0.249 -0.533 -0.876 0.943 D 18 14 6 19 4 0 8 77 96 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 13 80 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 12 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 21 20 6 23 3 1 12 75 95 -8.378 -0.015 -7.032 0.878 -0.548 -1.210 0.064 D 22 20 6 23 3 0 7 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 11 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 24 23 3 26 3 1 11 74 94 -8.378 -0.015 -7.032 0.809 -1.801 0.619 -1.234 D 25 23 3 26 3 0 6 73 92 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 27 26 3 29 5 1 11 73 92 -7.461 -0.328 -7.276 -2.411 -8.380 0.625 0.103 -1.232 -0.061 D 28 26 3 29 5 0 5 72 91 -4.959 -0.803 -4.221 -2.596 -2.508 IL 29 29 3 29 5 1 10 74 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 65 a u - - MP 30 29 3 34 6 2 12 72 92 -9.144 -9.083 -0.021 -7.860 -8.140 -8.535 -2.242 -2.208 -2.396 2.382 -2.361 -3.260 1.195 -0.748 -2.457 1.173 -3.004 -0.497 0.962 -2.556 -0.439 -0.218 ML 31 29 3 34 6 1 7 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 7 71 90 -8.177 -6.906 -1.043 -6.884 -1.104 -5.098 0.212 -0.646 -0.910 0.740 D 33 29 3 34 6 0 2 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 9 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 64 u a - - MP 36 35 6 40 6 2 10 70 90 -9.236 -9.176 -0.019 -7.952 -8.232 -8.627 -1.925 -2.095 -2.102 0.956 -0.858 -2.943 1.571 -0.282 -2.155 0.884 -2.717 -0.640 2.028 -2.249 -0.059 -0.431 ML 37 35 6 40 6 1 6 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 5 70 89 -7.570 -6.299 -0.866 -6.278 -1.411 -4.491 1.106 -0.982 -0.729 -0.438 D 39 35 6 40 6 0 2 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 7 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 63 u a - - MP 42 41 6 46 4 2 9 68 88 -7.389 -7.596 -0.039 -6.010 -1.760 -0.760 -0.692 1.049 -1.896 -2.796 1.424 -2.266 -2.012 1.020 -2.579 -0.511 2.030 -2.087 -0.085 -0.484 ML 43 41 6 46 4 1 5 69 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 3 69 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 2 68 87 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 7 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 6 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 48 47 6 50 3 1 7 66 85 -8.745 -0.014 -7.062 -0.091 0.395 -0.030 -0.382 D 49 47 6 50 3 0 1 65 84 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 5 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 62 - A - - MR 51 50 3 53 5 1 7 65 84 -7.461 -0.030 -7.276 -7.488 -8.380 1.001 -0.377 -1.291 -0.288 D 52 50 3 53 5 0 0 64 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 61 G C - - MP 54 53 3 58 6 2 8 64 83 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.954 -3.214 -5.039 0.099 -5.924 -4.892 -1.098 -5.442 -4.568 3.647 -4.889 0.017 -1.380 -4.622 -3.143 -3.922 ML 55 53 3 58 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 60 C G - - MP 60 59 6 64 6 2 6 62 81 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.545 -4.553 -4.234 -0.725 -2.894 -4.639 3.404 -3.703 -4.265 -0.555 -4.554 -2.553 0.667 -4.590 0.786 -3.091 ML 61 59 6 64 6 1 2 61 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 59 U A - - MP 66 65 6 70 6 2 5 60 79 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.593 -4.573 -4.393 -0.821 -3.212 -4.892 1.129 -3.967 -4.410 -0.639 -4.761 -2.581 3.428 -4.697 0.145 -3.202 ML 67 65 6 70 6 1 2 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 59 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 58 U A - - MP 72 71 6 76 4 2 3 58 77 -7.274 -8.520 -0.060 -4.973 -5.266 -5.105 -4.977 -1.341 -3.718 -5.438 0.619 -4.478 -4.975 -1.209 -5.294 -2.973 3.670 -5.363 -1.369 -3.657 ML 73 71 6 76 4 1 1 57 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 57 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 55 74 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 57 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 57 - u - - MR 78 77 6 80 3 1 1 56 75 -8.745 -0.066 -4.559 -0.319 0.356 -1.435 0.631 D 79 77 6 80 3 0 0 54 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 56 - U - - MR 81 80 3 83 5 1 2 55 74 -7.412 -0.031 -7.227 -7.440 -8.331 -0.349 -0.515 -1.477 1.109 D 82 80 3 83 5 0 0 54 73 -5.632 -0.555 -3.258 -4.689 -2.683 IR 83 83 3 83 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 55 g c - - MP 84 83 3 88 6 2 3 54 73 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -3.472 -2.524 -3.534 0.892 -4.022 -4.218 0.167 -3.916 -0.359 2.932 -3.986 1.324 -0.084 -3.559 -1.682 -2.524 ML 85 83 3 88 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 54 C G - - MP 90 89 6 94 6 2 3 52 71 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -3.778 -3.492 -3.758 0.267 -2.919 -4.503 3.108 -3.506 -3.715 0.527 -4.172 0.334 0.950 -4.008 -0.558 -2.591 ML 91 89 6 94 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 53 A U - - MP 96 95 6 100 6 2 3 50 69 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.008 -2.889 -4.106 3.361 -5.088 -5.879 -0.772 -4.234 -3.902 0.881 -4.498 0.994 -0.974 -4.807 -2.661 -2.875 ML 97 95 6 100 6 1 1 49 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 52 c g - - MP 102 101 6 106 6 2 3 48 67 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -2.683 -2.599 -2.827 0.730 -2.449 -3.621 2.619 -2.901 -0.587 0.908 -3.336 0.213 1.216 -2.976 -0.300 -1.869 ML 103 101 6 106 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 47 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 51 A U - - MP 108 107 6 112 4 2 2 46 65 -7.274 -8.520 -0.060 -4.973 -4.306 -3.725 -4.181 3.605 -4.486 -5.516 -0.493 -0.878 -4.349 -0.037 -4.895 -1.392 -0.861 -4.770 -2.325 -3.255 ML 109 107 6 112 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 50 - a - - MR 114 113 6 116 3 1 1 44 63 -8.745 -0.014 -7.062 0.929 -1.151 -1.297 0.309 D 115 113 6 116 3 0 0 42 61 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 49 - a - - MR 117 116 3 119 3 1 1 43 62 -8.745 -0.014 -7.062 0.878 -1.085 -0.662 0.083 D 118 116 3 119 3 0 0 41 60 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 48 - u - - MR 120 119 3 122 3 1 1 42 61 -8.745 -0.014 -7.062 0.202 -0.447 -1.236 0.758 D 121 119 3 122 3 0 0 40 59 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 47 - U - - MR 123 122 3 125 3 1 1 41 60 -8.745 -0.139 -3.480 -0.562 -0.594 -1.631 1.225 D 124 122 3 125 3 0 0 39 58 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 46 - A - - MR 126 125 3 128 3 1 1 40 59 -8.621 -0.016 -6.939 1.062 -0.611 -1.238 -0.263 D 127 125 3 128 3 0 0 38 57 -7.313 -2.491 -0.294 IR 128 128 3 128 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 45 - U - - MR 129 128 3 131 3 1 1 39 58 -8.621 -0.016 -6.939 -1.243 -0.597 -1.994 1.414 D 130 128 3 131 3 0 0 37 56 -7.313 -2.491 -0.294 IR 131 131 3 131 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 44 - U - - MR 132 131 3 134 3 1 1 38 57 -8.621 -0.237 -2.745 -1.459 -1.050 -2.203 1.554 D 133 131 3 134 3 0 0 36 55 -7.313 -2.491 -0.294 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - A - - MR 135 134 3 137 5 1 1 37 56 -3.612 -0.153 -6.953 -7.165 -8.057 1.278 -0.773 -1.288 -0.787 D 136 134 3 137 5 0 0 35 54 -6.550 -1.041 -1.320 -5.608 -3.602 IR 137 137 3 137 5 1 1 37 56 -2.691 -0.395 -6.202 -4.369 -5.475 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 41 a u - - MP 138 137 3 142 6 2 2 36 55 -9.194 -9.133 -0.020 -7.910 -8.190 -8.585 -3.574 -2.545 -3.690 2.826 -4.418 -5.126 -0.163 -3.864 -3.526 1.356 -4.089 1.848 -0.394 -4.190 -2.046 -2.501 ML 139 137 3 142 6 1 1 35 54 -7.244 -7.590 -0.514 -1.999 -7.440 -4.969 0.479 -0.966 0.400 -0.368 MR 140 137 3 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 21 40 A U - - MP 144 143 6 148 6 2 2 34 53 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.585 -3.441 -4.514 3.674 -5.295 -6.461 -0.940 -4.500 -4.410 0.215 -4.995 -0.811 -1.351 -5.491 -2.876 -3.327 ML 145 143 6 148 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 22 39 A U - - MP 150 149 6 154 6 2 2 32 51 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -4.585 -3.441 -4.514 3.674 -5.295 -6.461 -0.940 -4.500 -4.410 0.215 -4.995 -0.811 -1.351 -5.491 -2.876 -3.327 ML 151 149 6 154 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 38 U A - - MP 156 155 6 160 6 2 2 30 49 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.266 -5.105 -4.977 -1.341 -3.718 -5.438 0.619 -4.478 -4.975 -1.209 -5.294 -2.973 3.670 -5.363 -1.369 -3.657 ML 157 155 6 160 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 37 C G - - MP 162 161 6 166 6 2 2 28 47 -9.292 -9.231 -0.019 -8.008 -8.288 -8.683 -5.472 -5.455 -4.997 -1.629 -3.544 -5.286 3.759 -4.447 -5.093 -1.489 -5.238 -3.431 -0.143 -5.476 -1.289 -3.907 ML 163 161 6 166 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 36 A U - - MP 168 167 6 172 4 2 2 26 45 -7.389 -7.596 -0.039 -6.010 -4.585 -3.441 -4.514 3.674 -5.295 -6.461 -0.940 -4.500 -4.410 0.215 -4.995 -0.811 -1.351 -5.491 -2.876 -3.327 ML 169 167 6 172 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 26 - A - - - ML 174 173 6 176 3 1 1 23 42 -8.378 -0.015 -7.032 1.849 -3.207 -2.759 -2.835 D 175 173 6 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - C - - - ML 177 176 3 179 3 1 1 22 41 -8.378 -0.015 -7.032 -1.195 1.037 -2.050 0.345 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - G - - - ML 180 179 3 182 3 1 1 21 40 -8.378 -0.015 -7.032 -0.264 -2.265 1.408 -1.707 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - C - - - ML 183 182 3 185 3 1 1 20 38 -8.378 -0.015 -7.032 -2.749 1.812 -3.569 -1.970 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - C - - - ML 186 185 3 188 3 1 1 18 37 -8.378 -0.015 -7.032 -2.749 1.812 -3.569 -1.970 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - G - - - ML 189 188 3 191 3 1 1 17 36 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.378 -0.015 -7.032 -2.749 1.812 -3.569 -1.970 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - G - - - ML 195 194 3 197 3 1 1 14 33 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.378 -0.015 -7.032 -2.429 -3.761 1.859 -3.141 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - C - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -1.195 1.037 -2.050 0.345 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Oskar_OES ACC RF02548 DESC Oocyte entry signal (OES) from oskar mRNA LENG 67 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 04:26:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02548/CM NSEQ 14 EFFN 4.884277 CKSUM 2855131640 STATS LOCAL MSV -7.8312 0.71924 STATS LOCAL VITERBI -8.7666 0.71924 STATS LOCAL FORWARD -3.9567 0.71924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30429 1.54858 1.51743 1.21467 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 0.00000 * 1 3.13308 2.15017 2.92934 0.24014 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.12146 4.27768 2.29763 1.46634 0.26236 1.09861 0.40547 2 1.55442 1.85902 0.76059 1.79895 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.03085 4.18708 4.18708 1.46634 0.26236 2.22388 0.11450 3 0.92445 2.92901 0.85870 2.07078 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.03085 4.18708 4.18708 1.46634 0.26236 0.24383 1.53073 4 0.71137 1.80384 2.38782 1.37621 4 a - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 5 0.76700 2.99319 0.88366 2.62828 5 a - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 6 0.91045 1.25920 2.40980 1.49638 6 a - - - 1.38629 1.38629 1.38629 1.38629 0.28845 4.27768 1.44094 1.46634 0.26236 1.09861 0.40547 7 0.92211 1.64730 1.69956 1.48286 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02559 4.02559 1.46634 0.26236 0.56648 0.83822 8 1.90712 1.24529 1.84919 0.90073 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03085 4.18708 4.18708 1.46634 0.26236 0.24383 1.53073 9 1.47743 1.65633 1.73447 0.90524 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 10 1.52007 1.02627 1.35389 1.80344 10 c - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 11 2.86040 3.79191 0.11127 3.66906 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 12 3.45906 0.30588 3.28022 1.63760 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 13 3.64167 2.27017 3.46535 0.17526 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 14 4.15208 2.87115 4.02391 0.09458 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 15 2.19791 2.93466 0.25754 2.76674 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 16 2.72799 0.44616 1.83051 2.00813 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 17 0.31037 3.76324 1.54844 3.47249 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 18 2.25667 0.73811 1.44838 1.70191 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 19 0.15615 2.76424 2.90618 3.61701 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 20 0.66168 3.12710 0.96461 2.82950 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 21 0.12719 3.78526 2.66157 3.61576 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 22 0.12129 3.85722 2.68173 3.70275 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 23 4.04168 2.85701 3.95877 0.09882 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 24 4.10743 0.09291 4.01994 2.91286 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 25 0.11618 3.92443 2.69963 3.78523 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 26 0.05911 4.15364 3.80249 3.94376 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 27 2.53632 0.56916 3.16841 1.16227 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 28 1.64189 3.30719 0.33218 2.94873 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 29 3.90838 0.07202 4.42192 3.28611 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 30 3.90838 0.07202 4.42192 3.28611 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 31 3.57813 4.55117 0.05676 4.09254 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 32 3.90838 0.07202 4.42192 3.28611 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 33 3.57813 4.55117 0.05676 4.09254 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 34 3.57813 4.55117 0.05676 4.09254 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 35 2.53632 0.56916 3.16841 1.16227 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 36 3.98765 3.08914 3.73456 0.09208 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 37 3.19205 4.19614 0.07869 3.93563 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 38 0.10951 4.19112 2.69670 3.85538 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 39 3.97064 3.08580 3.72605 0.09282 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 40 3.95876 3.08343 3.72006 0.09335 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.19565 4.27768 1.80894 1.46634 0.26236 1.09861 0.40547 41 3.24341 2.14004 3.09138 0.22580 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.26173 2.28225 2.05397 0.29397 1.36767 2.62522 0.07518 42 0.40433 1.97586 2.51640 2.17876 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99654 3.99654 1.46634 0.26236 0.55962 0.84729 43 2.77295 2.28691 3.29195 0.22469 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03115 4.17773 4.17773 1.46634 0.26236 2.28806 0.10699 44 2.59153 1.88136 3.11839 0.31679 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03115 4.17773 4.17773 1.46634 0.26236 2.28806 0.10699 45 0.56857 1.84984 2.43965 1.66489 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03115 4.17773 4.17773 1.46634 0.26236 0.22681 1.59491 46 1.90441 1.87504 2.76470 0.45453 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 47 1.23707 1.73270 2.38093 0.81985 48 u - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 48 0.71984 2.29026 1.89610 1.34025 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 49 0.67009 2.38409 2.48711 1.16151 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 50 3.83859 3.24090 3.51896 0.09462 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 51 1.63537 2.22963 0.66952 1.68417 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 52 3.66513 2.49633 3.54595 0.14714 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 53 2.26055 2.68157 0.40434 1.83362 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 54 2.20342 0.63395 2.75259 1.21970 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.07065 4.27768 2.91253 1.46634 0.26236 1.09861 0.40547 55 1.71155 1.80275 2.61490 0.54233 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.02935 4.23638 4.23638 1.46634 0.26236 0.41256 1.08457 56 1.69234 1.06248 2.57988 0.93006 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 57 0.10769 4.22469 2.70309 3.88881 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 58 0.25269 3.63140 1.81103 3.40150 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 59 2.48618 3.44123 0.16866 3.22010 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 60 3.88664 0.17672 3.64281 2.16031 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 61 0.61593 1.64802 2.48415 1.69262 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 62 1.09646 1.72033 1.32896 1.50423 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 63 0.96242 2.04029 1.45828 1.36491 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 64 1.77831 1.89740 1.79866 0.66243 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 65 2.87388 1.99860 2.70521 0.29957 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 66 2.24684 0.76371 1.73785 1.37660 67 c - - > 1.38629 1.38629 1.38629 1.38629 0.02814 4.27768 4.27768 1.46634 0.26236 1.09861 0.40547 67 0.40188 3.12461 1.98498 1.89980 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.01417 4.26371 * 1.46634 0.26236 0.00000 * //