# STOCKHOLM 1.0
#=GF ID Oskar_OES
#=GF AC RF02548
#=GF DE Oocyte entry signal (OES) from oskar mRNA
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 46.0
#=GF NC 40.9
#=GF TC 46.2
#=GF SE Jambor et al, PMID:24572808 
#=GF SS Published; PMID:24572808 
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 0045451; pole plasm oskar mRNA localization;
#=GF RN [1]
#=GF RM 24572808
#=GF RT A stem-loop structure directs oskar mRNA to microtubule minus ends.
#=GF RA Jambor H, Mueller S, Bullock SL, Ephrussi A
#=GF RL RNA. 2014;20:429-439.
#=GF CC In Drosophila, oskar mRNA harbours a stem-loop structure in the 3’UTR,
#=GF CC called the oocyte entry signal (OES), that promotes dynein-based mRNA
#=GF CC accumulation in the oocyte [1]. 
#=GF WK Oskar
#=GF SQ 14

AFFI01005902.1/57757-57691   UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGCUCAAGCAAAUUCA
AFFF01007797.1/34651-34585   UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGCUCAAGCAAAUUCA
AAPQ01006469.1/892563-892497 UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-ACUAUUAAUGUGCUCAAGCAAAUUCA
L22556.1/3974-4037           UAUAGC-CUGGCUUGCACAAAAUCAAUACCGCGGUUGAUU---UUAUAAAUGUGUUUAGGUCAAUUUU
AASW01050332.1/2559-2625     UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGCUCAAGCAAAUUCA
AAPU01011093.1/12283-12343   U--UGA--AGGUUUGCAGCGAAUCAAUGCCGCGGUUGAUU---UCCCAUUUAUGUCAAAGCCCAUUCA
AAQB01008620.1/599925-599863 UCACAUUCAAGCUUGGGGAAAAUCAACGCCGCGGCUGAUUU-----UCUUUUUUAAUAAGCAGUUUGA
AAKO01000338.1/79222-79156   UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGCUCAAGCAAAUUCA
M65178.1/3085-3151           UGGAAAAUUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUGAUGUGCUCAAGCAAAUUCA
AAPT01020220.1/31199-31265   UAAUGC-UUGGCUUGCACAGAAUCAAUACCGCGGUUGAUUUCCUUUAAAUUGUGCUUAAGCUUUAUUU
AAEU02000007.1/218364-218430 UGGAAAAUUCGCUUGCACAGAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGCUCAAGCAAAUUCA
AAIZ01001855.1/30363-30297   UUAAGCCUUCGCUUGCACAGAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGUUUAAGCAAAUUCA
AADE01001974.1/3619-3553     UUAAGCCUUCGCUUGCACAGAAUCAACGCCGCGGCUGAUUU-AUUAUUAAUGUGUUUAAGCAAAUUCA
AAPP01019519.1/358338-358403 UGAAGCACUCGCUUGCACAAAAUCAACGCCGCGGCUGAUUU-AUUAUUGAUGUGC-CAAGCAAUUUCA
#=GC SS_cons                 <<<---<<<-<<<<<<<<<<<<<<<__________>>>>>>.-------->>>>>-->>>>->>>>>>
#=GC RF                      UgaaaaauucGCUUgCAcAaAAUCAACGCCGCGGCUGAUUu.AUUAUuaaUgUGcUuAAGCAaauucA
//
