# STOCKHOLM 1.0
#=GF ID mtPerm-5S
#=GF AC RF02547
#=GF DE Permuted mitochondrial genome encoded 5S rRNA
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 39.0
#=GF NC 38.8
#=GF TC 47.4
#=GF SE Valach M
#=GF SS Valach M
#=GF TP Gene; rRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF CL CL00113
#=GF DR SO; 0000652; rRNA_5S;
#=GF DR GO; 0003735; structural constituent of ribosome;
#=GF DR GO; 0005840; ribosome;
#=GF RN [1]
#=GF RM 25429974
#=GF RT Widespread occurrence of organelle genome-encoded 5S rRNAs including
#=GF RT permuted molecules.
#=GF RA Valach M, Burger G, Gray MW, Lang BF
#=GF RL Nucleic Acids Res. 2014;42:13764-13777.
#=GF WK 5S_ribosomal_RNA
#=GF SQ 6

AY494079.1/34765-34870 UGGAGGUUCGCCUUCAUGUCUAGGCCCCUACCCGAACUCUUACCGAACUCGAGCGUCCUUGCCUAGGCUGCCACACAUACUAGUUAAUCCUGGGAACCAUGGCUAU
AY500367.1/37407-37512 GUGAGGUUCGCCUCCAUGUUUAGAUCUAUACCCGAACUCUUACUGAACUCGAGUGUCCUUAUCUAGACAGCCAUACAUACUAGUUUUUGCUGGGAACCAUGGCUUA
FP885846.1/34652-34757 AAGAGGUAAGCCUCUAUAUCUAGAUCUAUACCCGAACUCUUAUCGAACUCGAGCGUCCUUAUCUAGAAAGCCACACAUACUAGUUUUUACUGGGAACCAUGGCUCU
AJ344328.1/36279-36382 AAGAGGCUCGCCUCUAUAUCUAGGUCUAUACCCGAACUCUUACCGAACUCGAGCGUCCUUAUCUAGAUAGCCACACAUACUACUU--UUGUGGGAACCAUGGCUUA
JF937591.1/35917-36020 UAGGGGCUAGCCCCUAUAUCUAAAUCUAUACCCGAACUCUUACCGAACUCGAGUGUCCUUAUUUAGAUAGCCACACAUACUACUU--UUGUGGGAACCAUGGCUCA
AJ277126.1/56295-56400 UAGAGGUCUGCCUCUGUAUCUAGGUCUAUACCCGAACUCUUACCGAACUCGAGCGUCCUUAUCUAGAAAGCCACACAUACUAAUUUUUGUUGGGAAUCAUGGCUCG
#=GC SS_cons           :<<<<<<__>>>>>>::<<<<<<<<----<<-<<<_____________>>>--->>---->>>>>>>><<<<<------<<<<______>>>>------>>>>>::
#=GC RF                ugGaGGcuagCCuCcAUgucuaGguCUaUaCCCGaACUCUUAccGAACuCGAGcGuCCUUacCuagacaGCCacACAUACuagUUuuUucugGGAAcCAuGGCuua
//
