# STOCKHOLM 1.0
#=GF ID SNOR75
#=GF AC RF02539
#=GF DE Plant small nucleolar RNA SNOR75
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 50.0
#=GF NC 49.8
#=GF TC 50.0
#=GF PI U15
#=GF SE Griffiths-Jones SR; Plant snoRNA database, PMID:12520043
#=GF SS Predicted; PFOLD; Griffiths-Jones SR, Daub J
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 22.42 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300760;
#=GF DR snoopy; Homo_sapiens300742;
#=GF RN [1]
#=GF RM 8319909
#=GF RT A small nucleolar RNA is processed from an intron of the human gene
#=GF RT encoding ribosomal protein S3.
#=GF RA Tycowski KT, Shu MD, Steitz JA
#=GF RL Genes Dev 1993;7:1176-1190.
#=GF RN [2]
#=GF RM 7984408
#=GF RT Different forms of U15 snoRNA are encoded in the introns of the ribosomal
#=GF RT protein S1 gene of Xenopus laevis.
#=GF RA Pellizzoni L, Crosio C, Campioni N, Loreni F, Pierandrei-Amaldi P
#=GF RL Nucleic Acids Res 1994;22:4607-4613.
#=GF RN [3]
#=GF RM 11469857
#=GF RT Identification of 66 box C/D snoRNAs in Arabidopsis thaliana: extensive
#=GF RT gene duplications generated multiple isoforms predicting new ribosomal RNA
#=GF RT 2'-O-methylation sites.
#=GF RA Barneche F, Gaspin C, Guyot R, Echeverria M
#=GF RL J Mol Biol 2001;311:57-73.
#=GF RN [4]
#=GF RM 12520043
#=GF RT Plant snoRNA database.
#=GF RA Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A,
#=GF RA Kastenmayer JP, Green PJ, Shaw P, Marshall DF
#=GF RL Nucleic Acids Res 2003;31:432-435.
#=GF CC U15 is a member of the C/D class of snoRNA which contain the C (UGAUGA)
#=GF CC and D (CUGA) box motifs. U15 is encoded within the introns of ribosomal
#=GF CC protein S1 in Xenopus and S3 in human and Fugu. snoR75 from Arabidopsis
#=GF CC [3] and homologues in rice and other plants are alternatively known as
#=GF CC U15, and, despite a significantly shorter sequence length, appear to be
#=GF CC related [4].
#=GF WK Small_nucleolar_RNA
#=GF SQ 6

AF318003.1/3-90        UCUCAGUGAUGAAGAAACAAUAGAUGACGAGUCCGAUGAAAUCCAUUCA-UAAAAUCGUGGGGACAAACGAGGCAUUUGUCUGAGAGGA
AB013389.1/56436-56523 UCUCAGUGAUGAAGGAACAAUAGAUGACGAGUCCGAUGAAAUCCAUUCAUUAAAUCAU-GGGGACAAACGAGGCAUUUGUCUGAGAGGA
AF318001.1/3-87        UCUCAGUGAUGAAUACACA---GAUGACGAGUCCGAUGAAAUCCAUUCAUUAAAUCAU-GGGGACAAACGAGGCAUUUGUCUGAGAGGA
AJ309198.1/702-616     UCUCCGUGAUGACGAACACA--GAUGACGAGUCCGAUCUAAUCCAUUCCAUUAAACCAUGGGGACAAUCGAGGCAUUUGUCUGAGAGAA
AJ489948.1/3-90        UCUCUGUGAUGACGAAAAACA-GAUGACGAGUCCGAUCCAAUCCAUUCCAUUAAACCAUGGGGACAAUCGAGGCAUUUGUCUGAGAGAA
AY103184.1/20-105      UCUCCUUGAUGAACACACA---GAUGACGAGUCCGAUCUAAUCCAUUCCAUUAAACCAUGGGGACAAUCGAGGCAUUUGUCUGAGAGAA
#=GC SS_cons           <<<<________________..______________________________________________________________>>>>:
#=GC RF                uCUCaGUGAUGAagAaAcAa..GAUGACGAGUCCGAUgaAAUCCAUUCaaUuAAaCcaUGGGGACAAuCGAGGCAUUUGUCUGAGAGaA
//
