INFERNAL1/a [1.1.5 | Sep 2023] NAME Noro_CRE ACC RF02534 DESC Norovirus cis-acting replication element (CRE) STATES 160 NODES 41 CLEN 52 W 67 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 21:37:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02534/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 3.832397 CKSUM 1596878410 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.10 NC 34.10 EFP7GF -12.4191 0.71932 ECMLC 0.70841 -5.16239 3.37838 1600000 509130 0.002357 ECMGC 0.41641 -19.22890 -4.51001 1600000 183596 0.002179 ECMLI 0.71462 -3.27128 4.48405 1600000 306258 0.003918 ECMGI 0.46168 -14.77572 -2.02010 1600000 144426 0.002770 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 67 87 -7.571 -7.778 -0.080 -4.506 IL 1 1 2 1 4 1 14 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 13 67 87 -8.509 -0.014 -7.163 1.875 -3.461 -2.992 -3.115 D 4 2 3 5 3 0 8 66 85 -6.661 -2.174 -0.380 IL 5 5 3 5 3 1 13 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 12 66 86 -8.509 -0.014 -7.163 -2.673 -4.030 1.883 -3.402 D 7 5 3 8 3 0 7 65 85 -6.661 -0.977 -1.052 IL 8 8 3 8 3 1 12 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 11 65 85 -8.910 -0.013 -7.227 -1.319 0.108 -2.113 1.196 D 10 8 3 11 3 0 6 64 83 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 10 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 52 - U - - MR 12 11 3 14 5 1 10 64 84 -7.617 -0.027 -7.433 -7.645 -8.537 -2.600 -2.412 -3.372 1.828 D 13 11 3 14 5 0 4 63 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 8 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 51 G C - - MP 15 14 3 19 6 2 10 63 83 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -3.912 -2.729 -3.917 0.765 -4.657 -4.562 -0.180 -4.349 -1.477 3.065 -4.352 1.610 -0.436 -3.903 -2.108 -2.855 ML 16 14 3 19 6 1 5 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 1 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 50 G C - - MP 21 20 6 25 4 2 8 61 81 -7.571 -7.778 -0.034 -6.192 -5.864 -3.647 -6.169 -0.598 -6.782 -5.108 -1.869 -6.421 -4.988 3.821 -5.262 -1.410 -2.233 -5.181 -3.984 -5.030 ML 22 20 6 25 4 1 5 62 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 61 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 1 60 80 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - C - - - ML 27 26 6 29 3 1 7 59 78 -8.551 -0.014 -7.205 -1.391 1.387 -1.705 -0.520 D 28 26 6 29 3 0 1 58 77 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - C - - - ML 30 29 3 32 3 1 6 58 77 -8.551 -0.014 -7.205 -0.840 1.253 -2.091 -0.281 D 31 29 3 32 3 0 0 56 76 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - - - ML 33 32 3 35 3 1 5 57 76 -8.910 -0.013 -7.227 1.676 -2.530 -1.302 -2.145 D 34 32 3 35 3 0 0 55 75 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 3 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 49 - U - - MR 36 35 3 38 3 1 4 56 75 -8.910 -0.013 -7.227 -0.927 -1.577 -2.194 1.546 D 37 35 3 38 3 0 0 54 73 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 48 - g - - MR 39 38 3 41 3 1 4 55 74 -8.910 -0.013 -7.227 0.235 -0.533 0.356 -0.230 D 40 38 3 41 3 0 0 53 72 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 47 - A - - MR 42 41 3 44 3 1 3 54 73 -8.910 -0.013 -7.227 1.882 -3.542 -3.067 -3.204 D 43 41 3 44 3 0 0 52 71 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 46 - G - - MR 45 44 3 47 5 1 3 53 72 -7.617 -0.027 -7.433 -7.645 -8.537 -2.749 -4.114 1.889 -3.482 D 46 44 3 47 5 0 0 51 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 45 c g - - MP 48 47 3 52 6 2 4 52 71 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -3.492 -3.528 -3.507 0.070 -0.369 -4.207 2.615 -3.335 -3.512 0.176 -3.982 -1.647 1.531 -3.719 1.529 -2.463 ML 49 47 3 52 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 44 C G - - MP 54 53 6 58 6 2 4 50 69 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -5.858 -5.873 -5.309 -2.042 -3.803 -5.547 3.814 -4.748 -5.436 -1.931 -5.521 -3.877 -0.463 -5.835 -1.576 -4.245 ML 55 53 6 58 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 43 C G - - MP 60 59 6 64 6 2 3 48 67 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -5.858 -5.873 -5.309 -2.042 -3.803 -5.547 3.814 -4.748 -5.436 -1.931 -5.521 -3.877 -0.463 -5.835 -1.576 -4.245 ML 61 59 6 64 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 42 g c - - MP 66 65 6 70 4 2 2 46 65 -7.571 -7.778 -0.034 -6.192 -1.961 -0.830 -2.161 1.332 -2.224 -2.890 1.104 -0.398 -2.197 1.978 -2.690 0.355 0.944 -1.487 -0.388 -0.876 ML 67 65 6 70 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - C - - - ML 72 71 6 74 3 1 1 43 62 -8.551 -0.014 -7.205 -2.115 1.616 -2.991 -0.789 D 73 71 6 74 3 0 0 42 61 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 75 74 3 77 3 1 1 42 61 -8.910 -0.013 -7.227 1.882 -3.542 -3.067 -3.204 D 76 74 3 77 3 0 0 41 60 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 41 - A - - MR 78 77 3 80 3 1 1 41 60 -8.910 -0.013 -7.227 1.882 -3.542 -3.067 -3.204 D 79 77 3 80 3 0 0 40 59 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 40 - A - - MR 81 80 3 83 5 1 1 40 59 -7.617 -0.027 -7.433 -7.645 -8.537 1.882 -3.542 -3.067 -3.204 D 82 80 3 83 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 39 C G - - MP 84 83 3 88 6 2 2 39 58 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -4.921 -4.955 -4.534 -1.098 -3.110 -4.880 3.539 -3.949 -4.576 -0.947 -4.825 -2.967 0.405 -4.927 0.495 -3.388 ML 85 83 3 88 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 38 C G - - MP 90 89 6 94 6 2 2 37 56 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -5.858 -5.873 -5.309 -2.042 -3.803 -5.547 3.814 -4.748 -5.436 -1.931 -5.521 -3.877 -0.463 -5.835 -1.576 -4.245 ML 91 89 6 94 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 37 A U - - MP 96 95 6 100 4 2 2 35 54 -7.571 -7.778 -0.034 -6.192 -4.923 -3.725 -4.786 3.755 -5.791 -7.013 -1.416 -4.751 -4.720 -0.158 -5.318 -1.063 -1.818 -5.956 -3.348 -3.614 ML 97 95 6 100 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 37 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - C - - - ML 102 101 6 104 3 1 1 33 52 -8.551 -0.014 -7.205 -1.900 1.523 -2.788 -0.488 D 103 101 6 104 3 0 0 32 51 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 105 104 3 107 3 1 1 32 50 -8.551 -0.014 -7.205 1.335 -1.167 -0.798 -1.130 D 106 104 3 107 3 0 0 31 50 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - U - - - ML 108 107 3 110 5 1 1 31 49 -7.617 -0.027 -7.433 -7.645 -8.537 -2.600 -2.412 -3.372 1.828 D 109 107 3 110 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 110 110 3 110 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 36 G C - - MP 111 110 3 115 6 2 2 30 48 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -4.018 0.784 -4.013 0.738 -4.879 -4.610 -0.320 -4.474 -4.054 3.091 -4.420 0.896 -0.568 -3.970 -2.259 -2.942 ML 112 110 3 115 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 35 c g - - MP 117 116 6 121 6 2 2 28 46 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -1.131 -2.494 -1.653 0.581 -0.817 -3.331 2.879 -2.749 -2.553 0.515 -3.105 -1.021 0.970 -2.650 -0.420 -1.698 ML 118 116 6 121 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 34 G U - - MP 123 122 6 127 6 2 2 26 44 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -3.799 -0.031 -4.256 0.706 -5.389 -4.688 -0.785 -4.199 -3.592 1.709 -3.851 3.063 -1.124 -4.456 -2.745 -2.841 ML 124 122 6 127 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 33 g c - - MP 129 128 6 133 4 2 2 24 42 -7.571 -7.778 -0.034 -6.192 -2.331 -1.320 -2.483 1.068 -2.621 -3.214 1.073 -2.860 -0.287 2.478 -1.815 0.230 0.726 -2.543 -0.676 -1.658 ML 130 128 6 133 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - A - - - ML 135 134 6 137 3 1 1 21 39 -8.551 -0.014 -7.205 1.882 -3.542 -3.067 -3.204 D 136 134 6 137 3 0 0 20 39 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - A - - - ML 138 137 3 140 3 1 1 20 38 -8.551 -0.014 -7.205 1.882 -3.542 -3.067 -3.204 D 139 137 3 140 3 0 0 19 38 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - g - - - ML 141 140 3 143 3 1 1 18 37 -8.551 -0.014 -7.205 0.703 -2.026 0.820 -1.471 D 142 140 3 143 3 0 0 18 37 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 144 143 3 146 3 1 1 17 36 -8.551 -0.014 -7.205 1.882 -3.542 -3.067 -3.204 D 145 143 3 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - A - - - ML 147 146 3 149 3 1 1 16 34 -8.551 -0.014 -7.205 1.882 -3.542 -3.067 -3.204 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - c - - - ML 150 149 3 152 3 1 1 14 33 -8.551 -0.014 -7.205 -1.282 0.893 -2.142 0.589 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - G - - - ML 153 152 3 155 3 1 1 13 31 -8.551 -0.014 -7.205 -2.749 -4.114 1.889 -3.482 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - A - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 1.882 -3.542 -3.067 -3.204 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Noro_CRE ACC RF02534 DESC Norovirus cis-acting replication element (CRE) LENG 52 MAXL 127 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 21:37:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02534/CM NSEQ 21 EFFN 5.114136 CKSUM 1596878410 STATS LOCAL MSV -7.0211 0.71932 STATS LOCAL VITERBI -7.9948 0.71932 STATS LOCAL FORWARD -3.7997 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21324 1.40021 1.30227 1.69115 1.38629 1.38629 1.38629 1.38629 0.05890 4.30355 3.13094 1.46634 0.26236 0.00000 * 1 0.05895 4.15636 3.80505 3.94666 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02828 4.27293 4.27293 1.46634 0.26236 1.65449 0.21219 2 3.58058 4.55384 0.05661 4.09500 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02828 4.27293 4.27293 1.46634 0.26236 0.48188 0.96134 3 2.53649 1.28920 3.09904 0.51037 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 4 2.24489 3.03090 0.23700 2.86829 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 5 3.24428 4.18057 0.07288 4.13485 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 6 2.58809 0.35602 2.68351 1.85755 6 C - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 7 2.07839 0.45300 3.05626 1.64981 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 8 0.18573 3.40560 2.35564 3.18243 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 9 2.71497 0.76713 2.52181 0.94383 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 10 4.26165 0.08360 4.14494 2.99068 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 11 4.25507 0.08383 4.14108 2.98939 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 12 1.49790 1.62100 0.99962 1.55742 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 13 3.16077 0.21561 3.77216 2.05140 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 14 0.05563 4.21278 3.85817 4.00648 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 15 3.57472 0.25436 3.39879 1.81311 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 16 4.26248 0.08357 4.14543 2.99085 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 17 0.10680 4.02520 2.76570 3.88741 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 18 2.98859 0.27578 3.61872 1.80882 18 C - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 19 0.40722 2.26294 1.98874 2.36885 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 20 3.55160 3.36964 4.09338 0.08312 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 21 1.49539 3.10756 0.38826 2.93946 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 22 1.85532 0.64875 2.04074 1.65565 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 23 1.84857 3.50120 0.25179 3.35328 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 24 1.77223 1.96459 0.61303 1.90969 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 25 0.05563 4.21278 3.85817 4.00648 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 26 0.05563 4.21278 3.85817 4.00648 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 27 0.86698 3.05045 0.76708 2.68713 27 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 28 0.05563 4.21278 3.85817 4.00648 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 29 0.05563 4.21278 3.85817 4.00648 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 30 2.49763 0.70540 3.11957 0.96855 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 31 3.63113 4.60923 0.05369 4.14571 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 32 0.05563 4.21278 3.85817 4.00648 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 33 1.77777 0.85128 1.71086 1.49877 33 c - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 34 3.53008 1.39892 3.29903 0.37554 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 35 1.57007 2.20942 0.61969 1.93727 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 36 3.17440 0.38477 2.91002 1.50014 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 37 4.10531 3.16214 3.83294 0.08389 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 38 3.27863 4.31514 0.07082 4.05561 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 39 2.57011 3.56050 0.15150 3.33465 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 40 0.05563 4.21278 3.85817 4.00648 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 41 0.05563 4.21278 3.85817 4.00648 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 42 1.90402 1.10032 1.67931 1.10333 42 c - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 43 3.27353 4.30616 0.07134 4.04592 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 44 3.27849 4.31488 0.07083 4.05534 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 45 1.43660 2.69653 0.49050 2.49491 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 46 3.63113 4.60923 0.05369 4.14571 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 47 0.05563 4.21278 3.85817 4.00648 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 48 1.23215 1.76272 1.09575 1.59717 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 49 2.14113 2.69880 3.16026 0.25777 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 50 4.29121 0.08840 4.05388 2.92689 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 51 2.70424 0.58536 2.84225 1.14608 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.02741 4.30355 4.30355 1.46634 0.26236 1.09861 0.40547 52 3.55160 3.36964 4.09338 0.08312 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.01380 4.28993 * 1.46634 0.26236 0.00000 * //