# STOCKHOLM 1.0
#=GF ID HAV_CRE
#=GF AC RF02533
#=GF DE Hepatitis A virus (HAV) cis-acting replication element (CRE)
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 55.0
#=GF NC 46.8
#=GF TC 133.0
#=GF SE PMID:18684812
#=GF SS Published; PMID:18684812
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.58 -Z 2958934 CM SEQDB
#=GF DR SO; 0005836; regulatory_region;
#=GF RN [1]
#=GF RM 18684812
#=GF RT Identification of a conserved RNA replication element (cre) within the
#=GF RT 3Dpol-coding sequence of hepatoviruses.
#=GF RA Yang Y, Yi M, Evans DJ, Simmonds P, Lemon SM
#=GF RL J Virol. 2008;82:10118-10128.
#=GF WK Hepatitis_A_virus_cis-acting_replication_element
#=GF SQ 2

D00924.1/5890-6003         CAGAGGAUAAUGAAAGUGGAAUUCACUCAGUGUUCAAUGAAUGUGGUCUCCAAAACGCUUUUUAAAAAGAGUCCAAUUCAUCAUCACAUUGAUAGGAACAUGAUUAAUUUUCCU
#=GR D00924.1/5890-6003 PP ******************************************************************************************************************
M14707.1/5946-6059         CAGAGAAUUAUGAAAGUGGAGUUUACUCAGUGUUCAAUGAAUGUGGUCUCCAAAACGCUUUUUAGAAAGAGUCCCAUUUAUCAUCACAUUGAUAAAACCAUGAUUAAUUUUCCU
#=GC SS_cons               ::<<<<<<<<-----<<<<--<<<<-<<<<<<<---<<<<<<<-<<-<<<__________________>>>->>>>>>>>>---->>>>>>>>>>>->>>>--->>>>>>>>::
#=GC RF                    CAGaggauuaUGAAAguGgAauucaCuCaguGuUCAaugaaugUGGUCuCCAAAACGCUUUUUAaAAAGaGUCCcauucauCAUCaCauuGaugaaAcCauGAUuaaucuuCCU
//
