# STOCKHOLM 1.0
#=GF ID SSRC8_1
#=GF AC RF02529
#=GF DE Streptococcus sRNA SSRC8
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 80.0
#=GF NC 41.7
#=GF TC 184.2
#=GF PI SSRC8;
#=GF SE Predicted; CMfinder
#=GF SS Predicted; CMfinder
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.77 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 23762235
#=GF RT Novel Regulatory Small RNAs in Streptococcus pyogenes.
#=GF RA Tesorero RA, Yu N, Wright JO, Svencionis JP, Cheng Q, Kim JH, Cho KH
#=GF RL PLoS One. 2013;8:e64021.
#=GF CC It is based on computationally predicted coordinates (RNAz).
#=GF WK Bacterial_small_RNA
#=GF SQ 3

AM295007.1/1492343-1492492         CAGUUUGGCUUGCUUUUAUGGUCUUUAUGUCUGUUUCUUACUUUGCUCAACUCUUUAACUUUUGUUAAGAAAUGAUCAUCUGCCAGCUCAAUUUCAAAGAAAGGUCCGACUGUUAAAAGGGAUGAUUUGUUGUCUCUUUGCGUUUUGUUA
#=GR AM295007.1/1492343-1492492 PP ******************************************************************************************************************************************************
AE014074.1/339703-339554           CAAACUGGCUUGCUUUUAUGGUCUUUAUGUCUGUUCCUUACUUUGCUCAACUCUUUAACUUUUGUUAAAAAAUGAUCAUCUGCCAGCUCAAUCUCAAAGAAAGGUCAGACUGUUAAAAGGGAUGAUUUGUUGUCUCUUUGCGCUUUGUUA
CP000003.1/379254-379105           CAAACUGGCUUGCUUUUAUGGUGUUUAUGUCUGUUCCUUACUUUACUCAACUCUUUAACUUUUGUUAAGAAAUGAUCAGCUGCCAGCUCAAUCUCAAAGAAAGAUCCGACUGUUAAAAGGGAUGAUUUGUUGUCUCUUUGCGUUUUGUUA
#=GC SS_cons                       ::(((-(((--((,,,,,,,,,,,,,,,<<<-<---<<<-<<<<--<<<----<<<<<<____>>>>>>--->>>-------------------->>>>->>>-->->>>,,,,,<<<<<<<<<<____>>>>>>>>>>)))))--))):
#=GC RF                            CAaacUggCUUGCUUUUAUGGUcUUUAUGuCUGUUcCuuACuuugCuCaACUCcuuaaCUUUUGuuaagAAAuGaUCAuCUGCCAGCUCAAUcUCaaaGAaaGgUCcGaCUGUUAaaaGgGaugaUUUGuuguCuCuuuGCGcuUUguuA
//
