# STOCKHOLM 1.0
#=GF ID mir-965
#=GF AC RF02520
#=GF DE mir-965 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 43.0
#=GF NC 42.9
#=GF TC 43.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR MIPF; MIPF0000708;
#=GF DR URL; http://www.mirbase.org;
#=GF RN [1]
#=GF RM 23189562
#=GF RT The regulation of silkworm fibroin L chain production by miRNA-965 and
#=GF RT miRNA-1926 in insect cells.
#=GF RA Huang Y, Zou Q, Song F, Wang X, Shen XJ
#=GF RL Bioorg Khim. 2012;38:477-481.
#=GF RN [2]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK MicroRNA
#=GF SQ 16

URS000075A9AF_7029/1-61    --------GAGGAAAAGUUAUAACGGU-UAUG-UUCAUA-AUAACA----GUCGUAAGCGUAUAGCUUUUCCCCUU-----
URS0000D530EE_126957/10-89 UUGCCUAGAGGGAGAAGCUGUACAGGC-UAUGAUUCGUACGUAUCAAGUCGACAUAAGCGUAUGGCUUUUCCCCUAGGAGA
URS0000D50B89_6669/8-81    CAAAGCA-AGGGAAAGGUUGUAGCUCU-UAUGUCUCAUUUUGAUUA-----GCAUAAGCGUAUGGCUUUUCCCCUGCAGUG
URS0000D521F4_34740/21-93  UAACUGAACGGGAGAAGUUAUAGCGCUGUAUGU--UAUGU-UAUAG-----CCAUAAGCGUAUAGCUUUUCCCCUUGGUUG
URS0000D55A10_51655/11-84  UUACUGA--GGGAGAAGUUAUAUCGCUGUAUGUAUUAUGUGCACUA-----UCAUAAGCGUAUAGCUUUUCCCCUUAGUGG
URS0000D560A1_7130/15-87   GAACUAAACGGGAAAAGUUGUAU-GCUAUAUGU-CAAUGUGUAU-A-----UCAUAAGCGUAUAGCUUUUCCCCUUAGUCU
URS00006B9C3B_7091/16-89   UAGCUAAACGGGAGAAGCUAUAGCGCUAUAUGU-CAAUAU-UAAAA-----UCAUAAGCGUAUAGCUUUUCCCCUUGGUUA
URS000075D35C_7070/17-89   ACCCUGG-GGUGGAAAGUUGUACCGCU-GAUGGUGAUUUUUCUACA------CAUAAGCGUAUAGCUUUUCCCCUUUGGUU
URS000075A1BD_7460/9-78    UUCCAAG-GGGGAAAGGUUAUAGCGAU-UAUGAGAAAUUA---AGC------CAUAAGCGUAUAGCUUUUUCCCUUUGGCA
URS000015F492_7227/17-92   AUUUUGG-GGGGUAAAACUGUAC-GUUAUAUGUGCCCUUCUGUGAUA---UUCAUAAGCGUAUAGCUUUUCCCCUUAAAAG
URS0000D51F66_7240/8-83    AUUUUGG-GGGGUGAAACUGUAC-GUUAUAUGUGCCCUUCUGUGAAA---UUCAUAAGCGUAUAGCUUUUCCCCUUAAAAG
URS00005D7161_7237/8-83    AAUUUGA-GGGGUCAAACUGUAC-GUUCUAUGUGACAAUAUUCGAAA---UUCAUAAGCGUAUAGCUUUUCCCCUUAAAAC
URS0000D56666_7244/18-92   UGUUUAG-GGGGUCAAACUGUAC-GUUGUAUGUGCAAAUGAU-GAAA---UUCAUAAGCGUAUAGCUUUUCCCCUUAAACG
URS0000D5682C_7165/18-89   UUCUGAAAGGGGAA-UGCUGUAC-ACUCUAUGU---GCUAAA-AAUA---UCCAUAAGCGUAUAGCUUUUCCCAUUUAGCG
URS0000D51FC4_7159/3-78    UUCUGAAGGGGGAAAUCCUGUAC-GCUGUAUGUUGUAUUUGA-AUAA---UCCAUAAGCGUAUAGCUUUUCCCAUUCGGCG
URS0000D51795_7176/9-84    UUCUGAAGGGGGAAAUCCUGUGC-GCUCUAUGUUGCAUUUUA-UCGA---CCCAUAAGCGUAUAGCUUUUCCCAUUCAGCG
#=GC SS_cons               ::<<<<<.-<<<-<<--<<<<<---<<-<<<<______________....__>>>>>>-->>>>>-->>->>>->>>>>::
#=GC RF                    uuccuaA.gGGGAaAAgcUGUAcCGcUaUAUGUuucaUuuuuaaaA....uuCAUAAgCGUAUAgCUUuUCCCCUuaggug
//
