INFERNAL1/a [1.1.5 | Sep 2023] NAME ToxI ACC RF02519 DESC ToxI antitoxin STATES 106 NODES 32 CLEN 34 W 48 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 15 14:58:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF02519/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 5.000000 CKSUM 795277032 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 54.70 NC 45.50 EFP7GF -9.6746 0.72867 ECMLC 0.61133 -8.90853 2.10244 1600000 1005925 0.001193 ECMGC 0.47521 -16.01626 -1.13312 1600000 471687 0.000848 ECMLI 0.52336 -9.54935 2.85641 1600000 792362 0.001514 ECMGI 0.49203 -13.81749 0.23294 1600000 402211 0.000995 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 48 67 -7.853 -8.060 -0.028 -6.474 IL 1 1 2 1 4 1 2 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 3 48 67 -8.820 -0.011 -7.474 1.917 -4.036 -3.527 -3.736 D 4 2 3 5 3 0 0 47 66 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 2 47 66 -8.820 -0.011 -7.474 1.917 -4.036 -3.527 -3.736 D 7 5 3 8 3 0 0 46 65 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 2 46 65 -8.820 -0.011 -7.474 1.917 -4.036 -3.527 -3.736 D 10 8 3 11 3 0 0 45 64 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 2 45 64 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 13 11 3 14 3 0 0 44 63 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 1 44 63 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 16 14 3 17 3 0 0 43 62 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 1 43 62 -8.820 -0.011 -7.474 -3.201 -4.609 1.920 -3.943 D 19 17 3 20 3 0 0 42 61 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 1 42 61 -8.820 -0.011 -7.474 -3.201 -4.609 1.920 -3.943 D 22 20 3 23 3 0 0 41 60 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 1 41 60 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 25 23 3 26 3 0 0 40 59 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 1 40 58 -8.820 -0.011 -7.474 -3.201 -4.609 1.920 -3.943 D 28 26 3 29 3 0 0 39 58 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 1 39 57 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 31 29 3 32 3 0 0 38 56 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 1 37 56 -9.168 -0.011 -7.485 1.917 -4.036 -3.527 -3.736 D 34 32 3 35 3 0 0 36 55 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 34 - A - - MR 36 35 3 38 3 1 1 36 55 -9.168 -0.011 -7.485 1.402 -1.791 -1.891 -0.323 D 37 35 3 38 3 0 0 35 54 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 33 - A - - MR 39 38 3 41 3 1 1 35 54 -9.168 -0.011 -7.485 1.917 -4.036 -3.527 -3.736 D 40 38 3 41 3 0 0 34 53 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 32 - A - - MR 42 41 3 44 3 1 1 34 53 -9.168 -0.011 -7.485 1.441 -0.575 -1.999 -1.464 D 43 41 3 44 3 0 0 33 52 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 31 - u - - MR 45 44 3 47 3 1 1 33 52 -9.168 -0.011 -7.485 0.398 -1.376 -1.646 0.984 D 46 44 3 47 3 0 0 32 51 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 30 - C - - MR 48 47 3 50 3 1 1 32 51 -9.168 -0.011 -7.485 -1.941 1.421 -2.867 -0.112 D 49 47 3 50 3 0 0 31 50 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 29 - A - - MR 51 50 3 53 5 1 1 31 50 -7.865 -0.023 -7.680 -7.892 -8.784 1.146 -2.360 0.397 -1.857 D 52 50 3 53 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 28 g c - - MP 54 53 3 58 6 2 2 30 49 -9.522 -9.461 -0.016 -8.238 -8.517 -8.912 -3.861 -2.770 -3.784 1.546 -4.261 -4.458 0.338 -4.210 -4.016 2.960 -4.374 -0.441 1.145 -3.743 -1.665 -2.730 ML 55 53 3 58 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 27 C G - - MP 60 59 6 64 6 2 2 28 47 -9.522 -9.461 -0.016 -8.238 -8.517 -8.912 -6.436 -6.502 -5.772 -2.678 -4.205 -5.936 3.874 -5.224 -5.962 -2.604 -5.938 -4.563 -0.969 -6.377 -2.038 -4.766 ML 61 59 6 64 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 26 C G - - MP 66 65 6 70 6 2 2 26 45 -9.522 -9.461 -0.016 -8.238 -8.517 -8.912 -6.436 -6.502 -5.772 -2.678 -4.205 -5.936 3.874 -5.224 -5.962 -2.604 -5.938 -4.563 -0.969 -6.377 -2.038 -4.766 ML 67 65 6 70 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 25 U A - - MP 72 71 6 76 4 2 2 24 43 -7.853 -8.060 -0.028 -6.474 -6.530 -6.383 -6.095 -2.606 -4.670 -6.446 -0.356 -5.486 -6.084 -2.576 -6.357 -4.253 3.852 -6.538 -2.284 -4.463 ML 73 71 6 76 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - U - - - ML 78 77 6 80 3 1 1 22 40 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 79 77 6 80 3 0 0 21 40 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - A - - - ML 81 80 3 83 3 1 1 20 39 -8.820 -0.011 -7.474 1.917 -4.036 -3.527 -3.736 D 82 80 3 83 3 0 0 20 39 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - C - - - ML 84 83 3 86 3 1 1 19 38 -8.820 -0.011 -7.474 -3.685 1.899 -4.419 -2.783 D 85 83 3 86 3 0 0 19 38 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - C - - - ML 87 86 3 89 3 1 1 18 37 -8.820 -0.011 -7.474 -3.685 1.899 -4.419 -2.783 D 88 86 3 89 3 0 0 18 37 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - G - - - ML 90 89 3 92 3 1 1 17 35 -8.820 -0.011 -7.474 -1.387 -0.822 1.461 -1.738 D 91 89 3 92 3 0 0 17 35 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 93 92 3 95 3 1 1 16 34 -8.820 -0.011 -7.474 -3.083 -2.826 -3.864 1.877 D 94 92 3 95 3 0 0 16 34 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 96 95 3 98 3 1 1 14 33 -8.820 -0.011 -7.474 1.917 -4.036 -3.527 -3.736 D 97 95 3 98 3 0 0 15 33 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - G - - - ML 99 98 3 101 3 1 1 12 31 -8.820 -0.011 -7.474 -3.201 -4.609 1.920 -3.943 D 100 98 3 101 3 0 0 13 32 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - U - - - ML 102 101 3 104 2 1 1 1 1 * 0.000 -3.083 -2.826 -3.864 1.877 D 103 101 3 104 2 0 0 0 0 * 0.000 IL 104 104 3 104 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 105 104 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ToxI ACC RF02519 DESC ToxI antitoxin LENG 34 MAXL 103 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 15 14:58:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF02519/CM NSEQ 5 EFFN 4.047852 CKSUM 795277032 STATS LOCAL MSV -6.6325 0.72867 STATS LOCAL VITERBI -7.0395 0.72867 STATS LOCAL FORWARD -3.6394 0.72867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16891 1.70803 1.44720 1.29886 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 0.07592 3.91182 3.57682 3.68337 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 0.07592 3.91182 3.57682 3.68337 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 0.07592 3.91182 3.57682 3.68337 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 3.25703 3.11651 3.79334 0.11131 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 3.25703 3.11651 3.79334 0.11131 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 3.35733 4.30956 0.07169 3.86748 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 3.35733 4.30956 0.07169 3.86748 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 3.25703 3.11651 3.79334 0.11131 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 9 3.35733 4.30956 0.07169 3.86748 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 3.25703 3.11651 3.79334 0.11131 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 0.07592 3.91182 3.57682 3.68337 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 1.60795 2.28353 0.65087 1.73623 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 3.92092 0.11714 3.77166 2.69269 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 3.91783 0.11729 3.76993 2.69210 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 3.82120 2.57847 3.65695 0.13194 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 16 3.25703 3.11651 3.79334 0.11131 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 0.07592 3.91182 3.57682 3.68337 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 18 3.64294 0.09291 4.18683 3.05005 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 19 3.64294 0.09291 4.18683 3.05005 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 20 2.17775 1.95076 0.42598 2.39242 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 21 3.25703 3.11651 3.79334 0.11131 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 22 0.07592 3.91182 3.57682 3.68337 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 3.35733 4.30956 0.07169 3.86748 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 3.25703 3.11651 3.79334 0.11131 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 0.14984 3.85427 2.41302 3.56069 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 2.97677 3.93785 0.10016 3.69460 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 2.98017 3.94347 0.09968 3.70081 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 1.88751 0.72514 2.10409 1.41741 28 c - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 29 0.62651 2.81976 1.14016 2.45157 29 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 30 2.54575 0.44448 3.16858 1.43395 30 C - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 31 1.12269 2.22916 2.41734 0.73852 31 u - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 32 0.42866 1.78517 2.61121 2.23115 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 33 0.07592 3.91182 3.57682 3.68337 33 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 34 0.45447 2.49605 2.55577 1.58389 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.01418 4.26268 * 1.46634 0.26236 0.00000 * //